Return-Path: X-Original-To: archive-asf-public-internal@cust-asf2.ponee.io Delivered-To: archive-asf-public-internal@cust-asf2.ponee.io Received: from cust-asf.ponee.io (cust-asf.ponee.io [163.172.22.183]) by cust-asf2.ponee.io (Postfix) with ESMTP id A53472009A8 for ; Tue, 17 May 2016 22:03:17 +0200 (CEST) Received: by cust-asf.ponee.io (Postfix) id A32271609F5; Tue, 17 May 2016 20:03:17 +0000 (UTC) Delivered-To: archive-asf-public@cust-asf.ponee.io Received: from mail.apache.org (hermes.apache.org [140.211.11.3]) by cust-asf.ponee.io (Postfix) with SMTP id 555881607A8 for ; Tue, 17 May 2016 22:03:16 +0200 (CEST) Received: (qmail 55633 invoked by uid 500); 17 May 2016 20:03:15 -0000 Mailing-List: contact notifications-help@ctakes.apache.org; run by ezmlm Precedence: bulk List-Help: List-Unsubscribe: List-Post: List-Id: Reply-To: dev@ctakes.apache.org Delivered-To: mailing list notifications@ctakes.apache.org Received: (qmail 55623 invoked by uid 99); 17 May 2016 20:03:15 -0000 Received: from crius.apache.org (HELO crius.apache.org) (140.211.11.14) by apache.org (qpsmtpd/0.29) with ESMTP; Tue, 17 May 2016 20:03:15 +0000 Received: from crius.apache.org (localhost [127.0.0.1]) by crius.apache.org (ASF Mail Server at crius.apache.org) with ESMTP id 36F6E9C019D; Tue, 17 May 2016 20:03:12 +0000 (UTC) Date: Tue, 17 May 2016 20:03:12 +0000 (UTC) From: Apache Jenkins Server To: notifications@ctakes.apache.org, timothy.miller@childrens.harvard.edu Message-ID: <1852167361.6678.1463515392222.JavaMail.jenkins@crius> Subject: =?UTF-8?Q?Build_failed_in_Jenkins:_ctakes-trunk-compiletest_=C2=BB?= =?UTF-8?Q?_Apache_cTAKES_Temporal_Information_Extraction_#799?= MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 7bit X-Instance-Identity: MIIBIjANBgkqhkiG9w0BAQEFAAOCAQ8AMIIBCgKCAQEAkqVKZPv7YyHBB3FvWfV7XQehwe/Ga3aadzSNknt8g382X3uN8A3SOQ+Ixq9HxS+ZlN6XR4TECySmSRy2JN5Rx8svxAD0TjtSF9LuU98dD+LniNDP7Lq6gvRFuJhbMHoS0nuTizDZLsK4X8TW5MyV9w+jFbdoZfRE5O/Mse0fkOeL5uoIS/3Vvu/W+x9QSjDkB7CaU56bPFlQjqqJBl3Cn9r34CkXQZYnLb/NjW4vcpw0+TgMUAPTIVEr5BTPZRshz19g7huwg3zANT5HBIZnzV4hsVY9w4JHkceFdKi/ibNnjPjsFs9pm0HSGJ/RDxjIvSTYT02eH4+m1RAYaj2E9QIDAQAB X-Jenkins-Job: ctakes-trunk-compiletest/org.apache.ctakes:ctakes-temporal X-Jenkins-Result: FAILURE archived-at: Tue, 17 May 2016 20:03:17 -0000 See Changes: [tmill] Fixes to thyme readers to allow for reading deepphe data. ------------------------------------------ [...truncated 613 lines...] Loading model: ........................................................................................ 17 May 2016 20:02:05 INFO ContextDependentTokenizerAnnotator - Finite state machines loaded. 17 May 2016 20:02:05 INFO SentenceDetector - Sentence detector model file: org/apache/ctakes/core/sentdetect/sd-med-model.zip 17 May 2016 20:02:06 INFO LvgCmdApiResourceImpl - Loading NLM Norm and Lvg with config file = /tmp/lvg.properties 17 May 2016 20:02:06 INFO LvgCmdApiResourceImpl - config file absolute path = /tmp/lvg.properties 17 May 2016 20:02:06 INFO LvgCmdApiResourceImpl - cwd = 17 May 2016 20:02:06 INFO LvgCmdApiResourceImpl - cd Exception: java.io.FileNotFoundException: (No such file or directory) ** Error: problem of opening/reading stop words file: ' Exception: java.io.FileNotFoundException: (No such file or directory) ** Error: problem of opening/reading non-Info words file: ' Exception: java.io.FileNotFoundException: (No such file or directory) ** Error: problem of opening/reading conjunction words file: ' ** ERR: problem of opening/reading diacritics file: ' Exception: java.io.FileNotFoundException: (No such file or directory) Exception: java.io.FileNotFoundException: (No such file or directory) ** Error: problem of opening/reading ligature file: ' ** Error: problem of opening/reading symbol synonym file: ' Exception: java.io.FileNotFoundException: (No such file or directory) **Error: problem of opening/reading file ' Exception: java.io.FileNotFoundException: (No such file or directory) ** Error: problem of opening/reading Unicode symbol file: ' Exception: java.io.FileNotFoundException: (No such file or directory) ** Error: problem of opening/reading Unicode file: ' Exception: java.io.FileNotFoundException: (No such file or directory) ** Error: problem of opening/reading nonStripMap file: ' Exception: java.io.FileNotFoundException: (No such file or directory) Exception: java.io.FileNotFoundException: (No such file or directory) **Error: problem of opening/reading file ' Exception: java.io.FileNotFoundException: (No such file or directory) **Error: problem of opening/reading file ' Exception: java.io.FileNotFoundException: (No such file or directory) **Error: problem of opening/reading file ' Exception: java.io.FileNotFoundException: (No such file or directory) **Error: problem of opening/reading file ' Exception: java.io.FileNotFoundException: (No such file or directory) ** Error: problem of opening/reading stop words file: ' Exception: java.io.FileNotFoundException: (No such file or directory) ** Error: problem of opening/reading non-Info words file: ' Exception: java.io.FileNotFoundException: (No such file or directory) ** Error: problem of opening/reading conjunction words file: ' ** ERR: problem of opening/reading diacritics file: ' Exception: java.io.FileNotFoundException: (No such file or directory) Exception: java.io.FileNotFoundException: (No such file or directory) ** Error: problem of opening/reading ligature file: ' ** Error: problem of opening/reading symbol synonym file: ' Exception: java.io.FileNotFoundException: (No such file or directory) **Error: problem of opening/reading file ' Exception: java.io.FileNotFoundException: (No such file or directory) ** Error: problem of opening/reading Unicode symbol file: ' Exception: java.io.FileNotFoundException: (No such file or directory) ** Error: problem of opening/reading Unicode file: ' Exception: java.io.FileNotFoundException: (No such file or directory) ** Error: problem of opening/reading nonStripMap file: ' Exception: java.io.FileNotFoundException: (No such file or directory) Exception: java.io.FileNotFoundException: (No such file or directory) **Error: problem of opening/reading file ' Exception: java.io.FileNotFoundException: (No such file or directory) **Error: problem of opening/reading file ' Exception: java.io.FileNotFoundException: (No such file or directory) **Error: problem of opening/reading file ' Exception: java.io.FileNotFoundException: (No such file or directory) **Error: problem of opening/reading file ' 17 May 2016 20:02:06 INFO LvgCmdApiResourceImpl - cd 17 May 2016 20:02:06 INFO TokenizerAnnotatorPTB - Initializing org.apache.ctakes.core.ae.TokenizerAnnotatorPTB 17 May 2016 20:02:06 INFO POSTagger - POS tagger model file: org/apache/ctakes/postagger/models/mayo-pos.zip 17 May 2016 20:02:06 INFO SentenceDetector - Starting processing. 17 May 2016 20:02:06 INFO TokenizerAnnotatorPTB - process(JCas) in org.apache.ctakes.core.ae.TokenizerAnnotatorPTB 17 May 2016 20:02:06 INFO LvgAnnotator - process(JCas) 17 May 2016 20:02:06 INFO ContextDependentTokenizerAnnotator - process(JCas) 17 May 2016 20:02:06 INFO POSTagger - process(JCas) 17 May 2016 20:02:06 INFO DocTimeRelAnnotatorTest - Event: old DocTimeRel:OVERLAP 17 May 2016 20:02:06 INFO DocTimeRelAnnotatorTest - Event: referred DocTimeRel:BEFORE 17 May 2016 20:02:06 INFO DocTimeRelAnnotatorTest - Event: diagnosed DocTimeRel:BEFORE 17 May 2016 20:02:06 INFO DocTimeRelAnnotatorTest - Event: cancer DocTimeRel:OVERLAP 17 May 2016 20:02:06 INFO DocTimeRelAnnotatorTest - Event: blood DocTimeRel:OVERLAP Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 16.722 sec Running org.apache.ctakes.temporal.ae.EventTimeRelationAnnotatorTest 17 May 2016 20:02:10 INFO ClearNLPDependencyParserAE - using Morphy analysis? true Loading configuration. Loading feature templates. Loading lexica. Loading model: ........................................................................................ 17 May 2016 20:02:21 INFO ContextDependentTokenizerAnnotator - Finite state machines loaded. 17 May 2016 20:02:21 INFO SentenceDetector - Sentence detector model file: org/apache/ctakes/core/sentdetect/sd-med-model.zip 17 May 2016 20:02:21 INFO LvgCmdApiResourceImpl - Loading NLM Norm and Lvg with config file = /tmp/lvg.properties 17 May 2016 20:02:21 INFO LvgCmdApiResourceImpl - config file absolute path = /tmp/lvg.properties 17 May 2016 20:02:21 INFO LvgCmdApiResourceImpl - cwd = 17 May 2016 20:02:21 INFO LvgCmdApiResourceImpl - cd Exception: java.io.FileNotFoundException: (No such file or directory) ** Error: problem of opening/reading stop words file: ' Exception: java.io.FileNotFoundException: (No such file or directory) ** Error: problem of opening/reading non-Info words file: ' Exception: java.io.FileNotFoundException: (No such file or directory) ** Error: problem of opening/reading conjunction words file: ' ** ERR: problem of opening/reading diacritics file: ' Exception: java.io.FileNotFoundException: (No such file or directory) Exception: java.io.FileNotFoundException: (No such file or directory) ** Error: problem of opening/reading ligature file: ' ** Error: problem of opening/reading symbol synonym file: ' Exception: java.io.FileNotFoundException: (No such file or directory) **Error: problem of opening/reading file ' Exception: java.io.FileNotFoundException: (No such file or directory) ** Error: problem of opening/reading Unicode symbol file: ' Exception: java.io.FileNotFoundException: (No such file or directory) ** Error: problem of opening/reading Unicode file: ' Exception: java.io.FileNotFoundException: (No such file or directory) ** Error: problem of opening/reading nonStripMap file: ' Exception: java.io.FileNotFoundException: (No such file or directory) Exception: java.io.FileNotFoundException: (No such file or directory) **Error: problem of opening/reading file ' Exception: java.io.FileNotFoundException: (No such file or directory) **Error: problem of opening/reading file ' Exception: java.io.FileNotFoundException: (No such file or directory) **Error: problem of opening/reading file ' Exception: java.io.FileNotFoundException: (No such file or directory) **Error: problem of opening/reading file ' Exception: java.io.FileNotFoundException: (No such file or directory) ** Error: problem of opening/reading stop words file: ' Exception: java.io.FileNotFoundException: (No such file or directory) ** Error: problem of opening/reading non-Info words file: ' Exception: java.io.FileNotFoundException: (No such file or directory) ** Error: problem of opening/reading conjunction words file: ' ** ERR: problem of opening/reading diacritics file: ' Exception: java.io.FileNotFoundException: (No such file or directory) Exception: java.io.FileNotFoundException: (No such file or directory) ** Error: problem of opening/reading ligature file: ' ** Error: problem of opening/reading symbol synonym file: ' Exception: java.io.FileNotFoundException: (No such file or directory) **Error: problem of opening/reading file ' Exception: java.io.FileNotFoundException: (No such file or directory) ** Error: problem of opening/reading Unicode symbol file: ' Exception: java.io.FileNotFoundException: (No such file or directory) ** Error: problem of opening/reading Unicode file: ' Exception: java.io.FileNotFoundException: (No such file or directory) ** Error: problem of opening/reading nonStripMap file: ' Exception: java.io.FileNotFoundException: (No such file or directory) Exception: java.io.FileNotFoundException: (No such file or directory) **Error: problem of opening/reading file ' Exception: java.io.FileNotFoundException: (No such file or directory) **Error: problem of opening/reading file ' Exception: java.io.FileNotFoundException: (No such file or directory) **Error: problem of opening/reading file ' Exception: java.io.FileNotFoundException: (No such file or directory) **Error: problem of opening/reading file ' 17 May 2016 20:02:21 INFO LvgCmdApiResourceImpl - cd 17 May 2016 20:02:21 INFO TokenizerAnnotatorPTB - Initializing org.apache.ctakes.core.ae.TokenizerAnnotatorPTB 17 May 2016 20:02:21 INFO POSTagger - POS tagger model file: org/apache/ctakes/postagger/models/mayo-pos.zip 17 May 2016 20:02:22 INFO SentenceDetector - Starting processing. 17 May 2016 20:02:22 INFO TokenizerAnnotatorPTB - process(JCas) in org.apache.ctakes.core.ae.TokenizerAnnotatorPTB 17 May 2016 20:02:22 INFO LvgAnnotator - process(JCas) 17 May 2016 20:02:22 INFO ContextDependentTokenizerAnnotator - process(JCas) 17 May 2016 20:02:22 INFO POSTagger - process(JCas) Null value found in Feature(, ) Null value found in Feature(, ) Null value found in Feature(, ) Null value found in Feature(, ) Null value found in Feature(, ) 17 May 2016 20:02:22 INFO EventTimeRelationAnnotatorTest - Relation: RelationArgument id: 0 argument: TimeMention sofa: _InitialView begin: 58 end: 66 id: 0 ontologyConceptArr: typeID: 0 segmentID: sentenceID: discoveryTechnique: 0 confidence: 0.0 polarity: 0 uncertainty: 0 conditional: false generic: false subject: historyOf: 0 originalText: date: time: timeClass: role: "Arg1" participatesIn: RelationArgument id: 0 argument: EventMention sofa: _InitialView begin: 67 end: 76 id: 0 ontologyConceptArr: typeID: 0 segmentID: sentenceID: discoveryTechnique: 0 confidence: 1.3807402 polarity: 0 uncertainty: 0 conditional: false generic: false subject: historyOf: 0 originalText: event: Event id: 0 ontologyConcept: mentions: discoveryTechnique: 0 confidence: 0.0 conditional: false generic: false subject: polarity: 0 uncertainty: 0 historyOf: 0 properties: EventProperties contextualModality: contextualAspect: permanence: category: aspect: docTimeRel: degree: polarity: 0 role: "Arg2" participatesIn: Category: CONTAINS Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 15.448 sec Running org.apache.ctakes.temporal.ae.EventEventRelationAnnotatorTest 17 May 2016 20:02:25 INFO ClearNLPDependencyParserAE - using Morphy analysis? true Loading configuration. Loading feature templates. Loading lexica. Loading model: ..Java HotSpot(TM) 64-Bit Server VM warning: INFO: os::commit_memory(0x0000000754280000, 409993216, 0) failed; error='Cannot allocate memory' (errno=12) # # There is insufficient memory for the Java Runtime Environment to continue. # Native memory allocation (mmap) failed to map 409993216 bytes for committing reserved memory. # An error report file with more information is saved as: # Results : Tests run: 3, Failures: 0, Errors: 0, Skipped: 0 [JENKINS] Recording test results [JENKINS] Archiving disabled