Return-Path: X-Original-To: apmail-ctakes-notifications-archive@www.apache.org Delivered-To: apmail-ctakes-notifications-archive@www.apache.org Received: from mail.apache.org (hermes.apache.org [140.211.11.3]) by minotaur.apache.org (Postfix) with SMTP id AC4DC1928E for ; Mon, 25 Apr 2016 21:39:12 +0000 (UTC) Received: (qmail 72539 invoked by uid 500); 25 Apr 2016 21:39:12 -0000 Delivered-To: apmail-ctakes-notifications-archive@ctakes.apache.org Received: (qmail 72505 invoked by uid 500); 25 Apr 2016 21:39:12 -0000 Mailing-List: contact notifications-help@ctakes.apache.org; run by ezmlm Precedence: bulk List-Help: List-Unsubscribe: List-Post: List-Id: Reply-To: dev@ctakes.apache.org Delivered-To: mailing list notifications@ctakes.apache.org Received: (qmail 72495 invoked by uid 99); 25 Apr 2016 21:39:12 -0000 Received: from crius.apache.org (HELO crius.apache.org) (140.211.11.14) by apache.org (qpsmtpd/0.29) with ESMTP; Mon, 25 Apr 2016 21:39:12 +0000 Received: from crius.apache.org (localhost [127.0.0.1]) by crius.apache.org (ASF Mail Server at crius.apache.org) with ESMTP id 6D0859C059A; Mon, 25 Apr 2016 21:39:10 +0000 (UTC) Date: Mon, 25 Apr 2016 21:39:10 +0000 (UTC) From: Apache Jenkins Server To: notifications@ctakes.apache.org, clin@yelp.com Message-ID: <601271182.9813.1461620350445.JavaMail.jenkins@crius> In-Reply-To: <888147612.9767.1461613079794.JavaMail.jenkins@crius> References: <888147612.9767.1461613079794.JavaMail.jenkins@crius> Subject: Build failed in Jenkins: ctakes-trunk-compiletest #793 MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 7bit X-Instance-Identity: MIIBIjANBgkqhkiG9w0BAQEFAAOCAQ8AMIIBCgKCAQEAkqVKZPv7YyHBB3FvWfV7XQehwe/Ga3aadzSNknt8g382X3uN8A3SOQ+Ixq9HxS+ZlN6XR4TECySmSRy2JN5Rx8svxAD0TjtSF9LuU98dD+LniNDP7Lq6gvRFuJhbMHoS0nuTizDZLsK4X8TW5MyV9w+jFbdoZfRE5O/Mse0fkOeL5uoIS/3Vvu/W+x9QSjDkB7CaU56bPFlQjqqJBl3Cn9r34CkXQZYnLb/NjW4vcpw0+TgMUAPTIVEr5BTPZRshz19g7huwg3zANT5HBIZnzV4hsVY9w4JHkceFdKi/ibNnjPjsFs9pm0HSGJ/RDxjIvSTYT02eH4+m1RAYaj2E9QIDAQAB X-Jenkins-Job: ctakes-trunk-compiletest X-Jenkins-Result: FAILURE See Changes: [clin] add back event-expansion for training location-of model: to expand use parameter: --expand-events ------------------------------------------ [...truncated 14648 lines...] ** ERR: problem of opening/reading diacritics file: ' Exception: java.io.FileNotFoundException: (No such file or directory) Exception: java.io.FileNotFoundException: (No such file or directory) ** Error: problem of opening/reading ligature file: ' ** Error: problem of opening/reading symbol synonym file: ' Exception: java.io.FileNotFoundException: (No such file or directory) **Error: problem of opening/reading file ' Exception: java.io.FileNotFoundException: (No such file or directory) ** Error: problem of opening/reading Unicode symbol file: ' Exception: java.io.FileNotFoundException: (No such file or directory) ** Error: problem of opening/reading Unicode file: ' Exception: java.io.FileNotFoundException: (No such file or directory) ** Error: problem of opening/reading nonStripMap file: ' Exception: java.io.FileNotFoundException: (No such file or directory) Exception: java.io.FileNotFoundException: (No such file or directory) **Error: problem of opening/reading file ' Exception: java.io.FileNotFoundException: (No such file or directory) **Error: problem of opening/reading file ' Exception: java.io.FileNotFoundException: (No such file or directory) **Error: problem of opening/reading file ' Exception: java.io.FileNotFoundException: (No such file or directory) **Error: problem of opening/reading file ' 25 Apr 2016 21:38:27 INFO LvgCmdApiResourceImpl - cd 25 Apr 2016 21:38:27 INFO TokenizerAnnotatorPTB - Initializing org.apache.ctakes.core.ae.TokenizerAnnotatorPTB 25 Apr 2016 21:38:27 INFO POSTagger - POS tagger model file: org/apache/ctakes/postagger/models/mayo-pos.zip 25 Apr 2016 21:38:27 INFO SentenceDetector - Starting processing. 25 Apr 2016 21:38:27 INFO TokenizerAnnotatorPTB - process(JCas) in org.apache.ctakes.core.ae.TokenizerAnnotatorPTB 25 Apr 2016 21:38:27 INFO LvgAnnotator - process(JCas) 25 Apr 2016 21:38:27 INFO ContextDependentTokenizerAnnotator - process(JCas) 25 Apr 2016 21:38:27 INFO POSTagger - process(JCas) 25 Apr 2016 21:38:28 INFO BackwardsTimeAnnotatorTest - Event: recently 25 Apr 2016 21:38:28 INFO BackwardsTimeAnnotatorTest - Event: 6 months ago Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 17.556 sec Running org.apache.ctakes.temporal.ae.DocTimeRelAnnotatorTest 25 Apr 2016 21:38:31 INFO ClearNLPDependencyParserAE - using Morphy analysis? true Loading configuration. Loading feature templates. Loading lexica. Loading model: ........................................................................................ 25 Apr 2016 21:38:43 INFO ContextDependentTokenizerAnnotator - Finite state machines loaded. 25 Apr 2016 21:38:43 INFO SentenceDetector - Sentence detector model file: org/apache/ctakes/core/sentdetect/sd-med-model.zip 25 Apr 2016 21:38:43 INFO LvgCmdApiResourceImpl - Loading NLM Norm and Lvg with config file = /tmp/lvg.properties 25 Apr 2016 21:38:43 INFO LvgCmdApiResourceImpl - config file absolute path = /tmp/lvg.properties 25 Apr 2016 21:38:43 INFO LvgCmdApiResourceImpl - cwd = 25 Apr 2016 21:38:43 INFO LvgCmdApiResourceImpl - cd Exception: java.io.FileNotFoundException: (No such file or directory) ** Error: problem of opening/reading stop words file: ' Exception: java.io.FileNotFoundException: (No such file or directory) ** Error: problem of opening/reading non-Info words file: ' Exception: java.io.FileNotFoundException: (No such file or directory) ** Error: problem of opening/reading conjunction words file: ' ** ERR: problem of opening/reading diacritics file: ' Exception: java.io.FileNotFoundException: (No such file or directory) Exception: java.io.FileNotFoundException: (No such file or directory) ** Error: problem of opening/reading ligature file: ' ** Error: problem of opening/reading symbol synonym file: ' Exception: java.io.FileNotFoundException: (No such file or directory) **Error: problem of opening/reading file ' Exception: java.io.FileNotFoundException: (No such file or directory) ** Error: problem of opening/reading Unicode symbol file: ' Exception: java.io.FileNotFoundException: (No such file or directory) ** Error: problem of opening/reading Unicode file: ' Exception: java.io.FileNotFoundException: (No such file or directory) ** Error: problem of opening/reading nonStripMap file: ' Exception: java.io.FileNotFoundException: (No such file or directory) Exception: java.io.FileNotFoundException: (No such file or directory) **Error: problem of opening/reading file ' Exception: java.io.FileNotFoundException: (No such file or directory) **Error: problem of opening/reading file ' Exception: java.io.FileNotFoundException: (No such file or directory) **Error: problem of opening/reading file ' Exception: java.io.FileNotFoundException: (No such file or directory) **Error: problem of opening/reading file ' Exception: java.io.FileNotFoundException: (No such file or directory) ** Error: problem of opening/reading stop words file: ' Exception: java.io.FileNotFoundException: (No such file or directory) ** Error: problem of opening/reading non-Info words file: ' Exception: java.io.FileNotFoundException: (No such file or directory) ** Error: problem of opening/reading conjunction words file: ' ** ERR: problem of opening/reading diacritics file: ' Exception: java.io.FileNotFoundException: (No such file or directory) Exception: java.io.FileNotFoundException: (No such file or directory) ** Error: problem of opening/reading ligature file: ' ** Error: problem of opening/reading symbol synonym file: ' Exception: java.io.FileNotFoundException: (No such file or directory) **Error: problem of opening/reading file ' Exception: java.io.FileNotFoundException: (No such file or directory) ** Error: problem of opening/reading Unicode symbol file: ' Exception: java.io.FileNotFoundException: (No such file or directory) ** Error: problem of opening/reading Unicode file: ' Exception: java.io.FileNotFoundException: (No such file or directory) ** Error: problem of opening/reading nonStripMap file: ' Exception: java.io.FileNotFoundException: (No such file or directory) Exception: java.io.FileNotFoundException: (No such file or directory) **Error: problem of opening/reading file ' Exception: java.io.FileNotFoundException: (No such file or directory) **Error: problem of opening/reading file ' Exception: java.io.FileNotFoundException: (No such file or directory) **Error: problem of opening/reading file ' Exception: java.io.FileNotFoundException: (No such file or directory) **Error: problem of opening/reading file ' 25 Apr 2016 21:38:43 INFO LvgCmdApiResourceImpl - cd 25 Apr 2016 21:38:43 INFO TokenizerAnnotatorPTB - Initializing org.apache.ctakes.core.ae.TokenizerAnnotatorPTB 25 Apr 2016 21:38:43 INFO POSTagger - POS tagger model file: org/apache/ctakes/postagger/models/mayo-pos.zip 25 Apr 2016 21:38:44 INFO SentenceDetector - Starting processing. 25 Apr 2016 21:38:44 INFO TokenizerAnnotatorPTB - process(JCas) in org.apache.ctakes.core.ae.TokenizerAnnotatorPTB 25 Apr 2016 21:38:44 INFO LvgAnnotator - process(JCas) 25 Apr 2016 21:38:44 INFO ContextDependentTokenizerAnnotator - process(JCas) 25 Apr 2016 21:38:44 INFO POSTagger - process(JCas) 25 Apr 2016 21:38:44 INFO DocTimeRelAnnotatorTest - Event: old DocTimeRel:OVERLAP 25 Apr 2016 21:38:44 INFO DocTimeRelAnnotatorTest - Event: referred DocTimeRel:BEFORE 25 Apr 2016 21:38:44 INFO DocTimeRelAnnotatorTest - Event: diagnosed DocTimeRel:BEFORE 25 Apr 2016 21:38:44 INFO DocTimeRelAnnotatorTest - Event: cancer DocTimeRel:OVERLAP 25 Apr 2016 21:38:44 INFO DocTimeRelAnnotatorTest - Event: blood DocTimeRel:OVERLAP Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 16.67 sec Running org.apache.ctakes.temporal.ae.EventTimeRelationAnnotatorTest 25 Apr 2016 21:38:48 INFO ClearNLPDependencyParserAE - using Morphy analysis? true Loading configuration. Loading feature templates. Loading lexica. Loading model: ........Killed Results : Tests run: 2, Failures: 0, Errors: 0, Skipped: 0 [JENKINS] Recording test results [JENKINS] Archiving disabled [INFO] ------------------------------------------------------------------------ [INFO] Reactor Summary: [INFO] [INFO] Apache cTAKES ..................................... SUCCESS [4.223s] [INFO] Apache cTAKES common type system .................. SUCCESS [9.310s] [INFO] Apache cTAKES utils ............................... SUCCESS [2.551s] [INFO] Apache cTAKES Resources core ...................... SUCCESS [1.618s] [INFO] Apache cTAKES core ................................ SUCCESS [33.217s] [INFO] Apache cTAKES Resources pos-tagger ................ SUCCESS [1.478s] [INFO] Apache cTAKES part-of-speech tagger ............... SUCCESS [4.829s] [INFO] Apache cTAKES Resources ctakes-chunker-res ........ SUCCESS [1.518s] [INFO] Apache cTAKES chunker ............................. SUCCESS [2.409s] [INFO] Apache cTAKES document preprocessor ............... SUCCESS [3.192s] [INFO] Apache cTAKES Resources dictionary-lookup ......... SUCCESS [21.869s] [INFO] Apache cTAKES dictionary lookup ................... SUCCESS [3.636s] [INFO] Apache cTAKES context dependent tokenizer ......... SUCCESS [3.963s] [INFO] Apache cTAKES Resources lvg ....................... SUCCESS [29.964s] [INFO] Apache cTAKES LVG lexical tools ................... SUCCESS [3.860s] [INFO] Apache cTAKES Resources ne-contexts ............... SUCCESS [1.564s] [INFO] Apache cTAKES named entity contexts ............... SUCCESS [3.675s] [INFO] Apache cTAKES Resources constituency-parser ....... SUCCESS [1.779s] [INFO] Apache cTAKES Constituency Parser ................. SUCCESS [1.964s] [INFO] Apache cTAKES Resources coreference ............... SUCCESS [1.738s] [INFO] Apache cTAKES Resources relation-extractor ........ SUCCESS [1.266s] [INFO] Apache cTAKES Resources dependency-parser ......... SUCCESS [3.707s] [INFO] Apache cTAKES Dependency Parser ................... SUCCESS [27.875s] [INFO] Apache cTAKES Relation Extractor .................. SUCCESS [10.639s] [INFO] Apache cTAKES CoReference Resolver ................ SUCCESS [10.700s] [INFO] Apache cTAKES Resources drug-ner .................. SUCCESS [1.369s] [INFO] Apache cTAKES Drug NER ............................ SUCCESS [6.251s] [INFO] Apache cTAKES Resources side-effect ............... SUCCESS [1.409s] [INFO] Apache cTAKES Side Effects ........................ SUCCESS [7.569s] [INFO] Apache cTAKES Resources smoking-status ............ SUCCESS [1.706s] [INFO] Apache cTAKES Smoking Status ...................... SUCCESS [9.034s] [INFO] Apache cTAKES Resources assertion ................. SUCCESS [1.752s] [INFO] Apache cTAKES Assertion ........................... SUCCESS [6.609s] [INFO] Apache cTAKES Resources assertion-zoner ........... SUCCESS [1.525s] [INFO] Apache cTAKES Assertion's zoner ................... SUCCESS [1.977s] [INFO] Apache cTAKES Resources temporal .................. SUCCESS [1.301s] [INFO] Apache cTAKES Resources dictionary-lookup-fast-res SUCCESS [2.779s] [INFO] Apache cTAKES dictionary lookup fast .............. SUCCESS [11.983s] [INFO] Apache cTAKES Resources ctakes-ytex-res ........... SUCCESS [1.623s] [INFO] Apache cTAKES YTEX ................................ SUCCESS [9.906s] [INFO] Apache cTAKES YTEX UIMA ........................... SUCCESS [9.462s] [INFO] Apache cTAKES ctakes-clinical-pipeline ............ SUCCESS [5.746s] [INFO] Apache cTAKES Temporal Information Extraction ..... FAILURE [1:01.510s] [INFO] Apache cTAKES YTEX Web ............................ SKIPPED [INFO] Apache cTAKES Distribution ........................ SKIPPED [INFO] Apache cTAKES Regression-test ..................... SKIPPED [INFO] Apache cTAKES template filler ..................... SKIPPED [INFO] ctakes-examples ................................... SKIPPED [INFO] ------------------------------------------------------------------------ [INFO] BUILD FAILURE [INFO] ------------------------------------------------------------------------ [INFO] Total time: 6:07.382s [INFO] Finished at: Mon Apr 25 21:38:52 UTC 2016 [INFO] Final Memory: 106M/757M [INFO] ------------------------------------------------------------------------ [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled Waiting for Jenkins to finish collecting data [ERROR] Failed to execute goal org.apache.maven.plugins:maven-surefire-plugin:2.12.1:test (default-test) on project ctakes-temporal: Execution default-test of goal org.apache.maven.plugins:maven-surefire-plugin:2.12.1:test failed: The forked VM terminated without saying properly goodbye. VM crash or System.exit called ? -> [Help 1] [ERROR] [ERROR] To see the full stack trace of the errors, re-run Maven with the -e switch. [ERROR] Re-run Maven using the -X switch to enable full debug logging. [ERROR] [ERROR] For more information about the errors and possible solutions, please read the following articles: [ERROR] [Help 1] http://cwiki.apache.org/confluence/display/MAVEN/PluginExecutionException [ERROR] [ERROR] After correcting the problems, you can resume the build with the command [ERROR] mvn -rf :ctakes-temporal Sending e-mails to: notifications@ctakes.apache.org channel stopped