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Mon, 25 Apr 2016 22:39:21 +0000 (UTC) Date: Mon, 25 Apr 2016 22:39:21 +0000 (UTC) From: Apache Jenkins Server To: notifications@ctakes.apache.org, clin@yelp.com Message-ID: <2111072982.9835.1461623961866.JavaMail.jenkins@crius> In-Reply-To: <601271182.9813.1461620350445.JavaMail.jenkins@crius> References: <601271182.9813.1461620350445.JavaMail.jenkins@crius> Subject: Build failed in Jenkins: ctakes-trunk-compiletest #794 MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 7bit X-Instance-Identity: MIIBIjANBgkqhkiG9w0BAQEFAAOCAQ8AMIIBCgKCAQEAkqVKZPv7YyHBB3FvWfV7XQehwe/Ga3aadzSNknt8g382X3uN8A3SOQ+Ixq9HxS+ZlN6XR4TECySmSRy2JN5Rx8svxAD0TjtSF9LuU98dD+LniNDP7Lq6gvRFuJhbMHoS0nuTizDZLsK4X8TW5MyV9w+jFbdoZfRE5O/Mse0fkOeL5uoIS/3Vvu/W+x9QSjDkB7CaU56bPFlQjqqJBl3Cn9r34CkXQZYnLb/NjW4vcpw0+TgMUAPTIVEr5BTPZRshz19g7huwg3zANT5HBIZnzV4hsVY9w4JHkceFdKi/ibNnjPjsFs9pm0HSGJ/RDxjIvSTYT02eH4+m1RAYaj2E9QIDAQAB X-Jenkins-Job: ctakes-trunk-compiletest X-Jenkins-Result: FAILURE See Changes: [clin] fix a relation bug that caused location_of category counts to keep on increasing for each grid search option. ------------------------------------------ [...truncated 11806 lines...] Exception: java.io.FileNotFoundException: (No such file or directory) ** Error: problem of opening/reading stop words file: ' Exception: java.io.FileNotFoundException: (No such file or directory) ** Error: problem of opening/reading non-Info words file: ' Exception: java.io.FileNotFoundException: (No such file or directory) ** Error: problem of opening/reading conjunction words file: ' ** ERR: problem of opening/reading diacritics file: ' Exception: java.io.FileNotFoundException: (No such file or directory) Exception: java.io.FileNotFoundException: (No such file or directory) ** Error: problem of opening/reading ligature file: ' ** Error: problem of opening/reading symbol synonym file: ' Exception: java.io.FileNotFoundException: (No such file or directory) **Error: problem of opening/reading file ' Exception: java.io.FileNotFoundException: (No such file or directory) ** Error: problem of opening/reading Unicode symbol file: ' Exception: java.io.FileNotFoundException: (No such file or directory) ** Error: problem of opening/reading Unicode file: ' Exception: java.io.FileNotFoundException: (No such file or directory) ** Error: problem of opening/reading nonStripMap file: ' Exception: java.io.FileNotFoundException: (No such file or directory) Exception: java.io.FileNotFoundException: (No such file or directory) **Error: problem of opening/reading file ' Exception: java.io.FileNotFoundException: (No such file or directory) **Error: problem of opening/reading file ' Exception: java.io.FileNotFoundException: (No such file or directory) **Error: problem of opening/reading file ' Exception: java.io.FileNotFoundException: (No such file or directory) **Error: problem of opening/reading file ' 25 Apr 2016 22:38:30 INFO LvgCmdApiResourceImpl - cd 25 Apr 2016 22:38:30 INFO TokenizerAnnotatorPTB - Initializing org.apache.ctakes.core.ae.TokenizerAnnotatorPTB 25 Apr 2016 22:38:30 INFO POSTagger - POS tagger model file: org/apache/ctakes/postagger/models/mayo-pos.zip 25 Apr 2016 22:38:30 INFO SentenceDetector - Starting processing. 25 Apr 2016 22:38:30 INFO TokenizerAnnotatorPTB - process(JCas) in org.apache.ctakes.core.ae.TokenizerAnnotatorPTB 25 Apr 2016 22:38:30 INFO LvgAnnotator - process(JCas) 25 Apr 2016 22:38:30 INFO ContextDependentTokenizerAnnotator - process(JCas) 25 Apr 2016 22:38:30 INFO POSTagger - process(JCas) Null value found in Feature(, ) Null value found in Feature(, ) Null value found in Feature(, ) Null value found in Feature(, ) Null value found in Feature(, ) 25 Apr 2016 22:38:31 INFO EventTimeRelationAnnotatorTest - Relation: RelationArgument id: 0 argument: TimeMention sofa: _InitialView begin: 58 end: 66 id: 0 ontologyConceptArr: typeID: 0 segmentID: sentenceID: discoveryTechnique: 0 confidence: 0.0 polarity: 0 uncertainty: 0 conditional: false generic: false subject: historyOf: 0 originalText: date: time: timeClass: role: "Arg1" participatesIn: RelationArgument id: 0 argument: EventMention sofa: _InitialView begin: 67 end: 76 id: 0 ontologyConceptArr: typeID: 0 segmentID: sentenceID: discoveryTechnique: 0 confidence: 1.3807402 polarity: 0 uncertainty: 0 conditional: false generic: false subject: historyOf: 0 originalText: event: Event id: 0 ontologyConcept: mentions: discoveryTechnique: 0 confidence: 0.0 conditional: false generic: false subject: polarity: 0 uncertainty: 0 historyOf: 0 properties: EventProperties contextualModality: contextualAspect: permanence: category: aspect: docTimeRel: degree: polarity: 0 role: "Arg2" participatesIn: Category: CONTAINS Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 14.506 sec Running org.apache.ctakes.temporal.ae.EventEventRelationAnnotatorTest 25 Apr 2016 22:38:34 INFO ClearNLPDependencyParserAE - using Morphy analysis? true Loading configuration. Loading feature templates. Loading lexica. Loading model: Java HotSpot(TM) 64-Bit Server VM warning: INFO: os::commit_memory(0x000000074b300000, 409993216, 0) failed; error='Cannot allocate memory' (errno=12) # # There is insufficient memory for the Java Runtime Environment to continue. # Native memory allocation (mmap) failed to map 409993216 bytes for committing reserved memory. # An error report file with more information is saved as: # Results : Tests run: 3, Failures: 0, Errors: 0, Skipped: 0 [JENKINS] Recording test results [JENKINS] Archiving disabled [INFO] ------------------------------------------------------------------------ [INFO] Reactor Summary: [INFO] [INFO] Apache cTAKES ..................................... SUCCESS [3.891s] [INFO] Apache cTAKES common type system .................. SUCCESS [8.864s] [INFO] Apache cTAKES utils ............................... SUCCESS [2.953s] [INFO] Apache cTAKES Resources core ...................... SUCCESS [1.300s] [INFO] Apache cTAKES core ................................ SUCCESS [32.831s] [INFO] Apache cTAKES Resources pos-tagger ................ SUCCESS [1.398s] [INFO] Apache cTAKES part-of-speech tagger ............... SUCCESS [4.468s] [INFO] Apache cTAKES Resources ctakes-chunker-res ........ SUCCESS [1.648s] [INFO] Apache cTAKES chunker ............................. SUCCESS [2.996s] [INFO] Apache cTAKES document preprocessor ............... SUCCESS [2.791s] [INFO] Apache cTAKES Resources dictionary-lookup ......... SUCCESS [16.969s] [INFO] Apache cTAKES dictionary lookup ................... SUCCESS [3.836s] [INFO] Apache cTAKES context dependent tokenizer ......... SUCCESS [4.075s] [INFO] Apache cTAKES Resources lvg ....................... SUCCESS [26.484s] [INFO] Apache cTAKES LVG lexical tools ................... SUCCESS [3.867s] [INFO] Apache cTAKES Resources ne-contexts ............... SUCCESS [1.529s] [INFO] Apache cTAKES named entity contexts ............... SUCCESS [3.848s] [INFO] Apache cTAKES Resources constituency-parser ....... SUCCESS [1.559s] [INFO] Apache cTAKES Constituency Parser ................. SUCCESS [2.024s] [INFO] Apache cTAKES Resources coreference ............... SUCCESS [1.672s] [INFO] Apache cTAKES Resources relation-extractor ........ SUCCESS [1.350s] [INFO] Apache cTAKES Resources dependency-parser ......... SUCCESS [3.512s] [INFO] Apache cTAKES Dependency Parser ................... SUCCESS [28.095s] [INFO] Apache cTAKES Relation Extractor .................. SUCCESS [9.304s] [INFO] Apache cTAKES CoReference Resolver ................ SUCCESS [6.001s] [INFO] Apache cTAKES Resources drug-ner .................. SUCCESS [1.464s] [INFO] Apache cTAKES Drug NER ............................ SUCCESS [6.545s] [INFO] Apache cTAKES Resources side-effect ............... SUCCESS [1.440s] [INFO] Apache cTAKES Side Effects ........................ SUCCESS [7.402s] [INFO] Apache cTAKES Resources smoking-status ............ SUCCESS [1.373s] [INFO] Apache cTAKES Smoking Status ...................... SUCCESS [7.403s] [INFO] Apache cTAKES Resources assertion ................. SUCCESS [1.620s] [INFO] Apache cTAKES Assertion ........................... SUCCESS [6.453s] [INFO] Apache cTAKES Resources assertion-zoner ........... SUCCESS [1.432s] [INFO] Apache cTAKES Assertion's zoner ................... SUCCESS [2.124s] [INFO] Apache cTAKES Resources temporal .................. SUCCESS [4.388s] [INFO] Apache cTAKES Resources dictionary-lookup-fast-res SUCCESS [2.434s] [INFO] Apache cTAKES dictionary lookup fast .............. SUCCESS [10.960s] [INFO] Apache cTAKES Resources ctakes-ytex-res ........... SUCCESS [1.360s] [INFO] Apache cTAKES YTEX ................................ SUCCESS [7.354s] [INFO] Apache cTAKES YTEX UIMA ........................... SUCCESS [8.153s] [INFO] Apache cTAKES ctakes-clinical-pipeline ............ SUCCESS [5.825s] [INFO] Apache cTAKES Temporal Information Extraction ..... FAILURE [1:12.225s] [INFO] Apache cTAKES YTEX Web ............................ SKIPPED [INFO] Apache cTAKES Distribution ........................ SKIPPED [INFO] Apache cTAKES Regression-test ..................... SKIPPED [INFO] Apache cTAKES template filler ..................... SKIPPED [INFO] ctakes-examples ................................... SKIPPED [INFO] ------------------------------------------------------------------------ [INFO] BUILD FAILURE [INFO] ------------------------------------------------------------------------ [INFO] Total time: 6:00.281s [INFO] Finished at: Mon Apr 25 22:38:36 UTC 2016 [INFO] Final Memory: 110M/693M [INFO] ------------------------------------------------------------------------ [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled Waiting for Jenkins to finish collecting data [ERROR] Failed to execute goal org.apache.maven.plugins:maven-surefire-plugin:2.12.1:test (default-test) on project ctakes-temporal: Execution default-test of goal org.apache.maven.plugins:maven-surefire-plugin:2.12.1:test failed: The forked VM terminated without saying properly goodbye. VM crash or System.exit called ? -> [Help 1] [ERROR] [ERROR] To see the full stack trace of the errors, re-run Maven with the -e switch. [ERROR] Re-run Maven using the -X switch to enable full debug logging. [ERROR] [ERROR] For more information about the errors and possible solutions, please read the following articles: [ERROR] [Help 1] http://cwiki.apache.org/confluence/display/MAVEN/PluginExecutionException [ERROR] [ERROR] After correcting the problems, you can resume the build with the command [ERROR] mvn -rf :ctakes-temporal Sending e-mails to: notifications@ctakes.apache.org channel stopped