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From Apache Jenkins Server <jenk...@builds.apache.org>
Subject Build failed in Jenkins: ctakes-trunk-compiletest » Apache cTAKES Temporal Information Extraction #792
Date Mon, 25 Apr 2016 19:37:57 GMT
See <https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/792/>

------------------------------------------
[...truncated 334 lines...]
[WARNING]   where T is a type-variable:
    T extends Annotation declared in class CombinedExtractor1
<https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/src/main/java/org/apache/ctakes/temporal/ae/feature/MultiTokenFeaturesExtractor.java>:[87,55]
[unchecked] unchecked call to NamingExtractor1(String,FeatureExtractor1<T>) as a member
of the raw type NamingExtractor1
[WARNING]   where T is a type-variable:
    T extends Annotation declared in class NamingExtractor1
<https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/src/main/java/org/apache/ctakes/temporal/ae/feature/MultiTokenFeaturesExtractor.java>:[96,3]
[unchecked] unchecked call to NamingExtractor1(String,FeatureExtractor1<T>) as a member
of the raw type NamingExtractor1
[WARNING]   where T is a type-variable:
    T extends Annotation declared in class NamingExtractor1
<https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/src/main/java/org/apache/ctakes/temporal/ae/feature/MultiTokenFeaturesExtractor.java>:[94,42]
[unchecked] unchecked call to CleartkExtractor(Class<SEARCH_T>,FeatureExtractor1<SEARCH_T>,Context...)
as a member of the raw type CleartkExtractor
[WARNING]   where SEARCH_T is a type-variable:
    SEARCH_T extends Annotation declared in class CleartkExtractor
<https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/src/main/java/org/apache/ctakes/temporal/ae/feature/MultiTokenFeaturesExtractor.java>:[107,44]
[unchecked] unchecked call to DistanceExtractor(String,Class<? extends Annotation>)
as a member of the raw type DistanceExtractor
[WARNING] <https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/src/main/java/org/apache/ctakes/temporal/ae/feature/MultiTokenFeaturesExtractor.java>:[154,57]
[unchecked] unchecked call to extract(JCas,T) as a member of the raw type FeatureExtractor1
[WARNING]   where T is a type-variable:
    T extends Annotation declared in interface FeatureExtractor1
<https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/src/main/java/org/apache/ctakes/temporal/ae/feature/MultiTokenFeaturesExtractor.java>:[154,18]
[unchecked] unchecked method invocation: method addAll in interface List is applied to given
types
[WARNING]   required: Collection<? extends E>
  found: List
  where E is a type-variable:
    E extends Object declared in interface List
<https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/src/main/java/org/apache/ctakes/temporal/ae/feature/MultiTokenFeaturesExtractor.java>:[154,57]
[unchecked] unchecked conversion
[INFO] 
[INFO] --- maven-dependency-plugin:2.8:unpack (unpack) @ ctakes-temporal ---
[INFO] Configured Artifact: net.sourceforge.ctakesresources:ctakes-resources-umls2011ab:3.1.1:jar
[INFO] ctakes-resources-umls2011ab-3.1.1.jar already unpacked.
[INFO] 
[INFO] --- maven-remote-resources-plugin:1.4:process (default) @ ctakes-temporal ---
[INFO] 
[INFO] --- maven-resources-plugin:2.5:resources (default-resources) @ ctakes-temporal ---
[debug] execute contextualize
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] Copying 6 resources
[INFO] Copying 3 resources
[INFO] Copying 3 resources
[INFO] 
[INFO] --- maven-compiler-plugin:2.4:compile (default-compile) @ ctakes-temporal ---
[INFO] Compiling 2 source files to <https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/target/classes>
[INFO] 
[INFO] --- maven-resources-plugin:2.5:testResources (default-testResources) @ ctakes-temporal
---
[debug] execute contextualize
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory <https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/src/test/resources>
[INFO] Copying 3 resources
[INFO] Copying 3 resources
[INFO] 
[INFO] --- maven-compiler-plugin:2.4:testCompile (default-testCompile) @ ctakes-temporal ---
[INFO] Compiling 6 source files to <https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/target/test-classes>
[INFO] 
[INFO] --- maven-surefire-plugin:2.12.1:test (default-test) @ ctakes-temporal ---
[INFO] Surefire report directory: <https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/target/surefire-reports>

-------------------------------------------------------
 T E S T S
-------------------------------------------------------
Running org.apache.ctakes.temporal.ae.EventTimeRelationAnnotatorTest
log4j: reset attribute= "false".
log4j: Threshold ="null".
log4j: Retreiving an instance of org.apache.log4j.Logger.
log4j: Setting [ProgressAppender] additivity to [false].
log4j: Level value for ProgressAppender is  [INFO].
log4j: ProgressAppender level set to INFO
log4j: Class name: [org.apache.log4j.ConsoleAppender]
log4j: Parsing layout of class: "org.apache.log4j.PatternLayout"
log4j: Setting property [conversionPattern] to [%m].
log4j: Adding appender named [noEolAppender] to category [ProgressAppender].
log4j: Retreiving an instance of org.apache.log4j.Logger.
log4j: Setting [ProgressDone] additivity to [false].
log4j: Level value for ProgressDone is  [INFO].
log4j: ProgressDone level set to INFO
log4j: Class name: [org.apache.log4j.ConsoleAppender]
log4j: Parsing layout of class: "org.apache.log4j.PatternLayout"
log4j: Setting property [conversionPattern] to [%m%n].
log4j: Adding appender named [eolAppender] to category [ProgressDone].
log4j: Level value for root is  [INFO].
log4j: root level set to INFO
log4j: Class name: [org.apache.log4j.ConsoleAppender]
log4j: Parsing layout of class: "org.apache.log4j.PatternLayout"
log4j: Setting property [conversionPattern] to [%d{dd MMM yyyy HH:mm:ss} %5p %c{1} - %m%n].
log4j: Adding appender named [consoleAppender] to category [root].
25 Apr 2016 19:37:13  INFO ClearNLPDependencyParserAE - using Morphy analysis? true
Loading configuration.
Loading feature templates.
Loading lexica.
Loading model:
........................................................................................
25 Apr 2016 19:37:27  INFO ContextDependentTokenizerAnnotator - Finite state machines loaded.
25 Apr 2016 19:37:27  INFO SentenceDetector - Sentence detector model file: org/apache/ctakes/core/sentdetect/sd-med-model.zip
25 Apr 2016 19:37:28  INFO LvgCmdApiResourceImpl - Loading NLM Norm and Lvg with config file
= /tmp/lvg.properties
25 Apr 2016 19:37:28  INFO LvgCmdApiResourceImpl -   config file absolute path = /tmp/lvg.properties
25 Apr 2016 19:37:28  INFO LvgCmdApiResourceImpl - cwd = <https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/>
25 Apr 2016 19:37:28  INFO LvgCmdApiResourceImpl - cd <https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/>
Exception: java.io.FileNotFoundException: <https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/data/misc/stopWords.data>
(No such file or directory)
** Error: problem of opening/reading stop words file: '<https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/data/misc/stopWords.data'.>
Exception: java.io.FileNotFoundException: <https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/data/misc/nonInfoWords.data>
(No such file or directory)
** Error: problem of opening/reading non-Info words file: '<https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/data/misc/nonInfoWords.data'.>
Exception: java.io.FileNotFoundException: <https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/data/misc/conjunctionWord.data>
(No such file or directory)
** Error: problem of opening/reading conjunction words file: '<https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/data/misc/conjunctionWord.data'.>
** ERR: problem of opening/reading diacritics file: '<https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/data/Unicode/diacriticMap.data'.>
Exception: java.io.FileNotFoundException: <https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/data/Unicode/diacriticMap.data>
(No such file or directory)
Exception: java.io.FileNotFoundException: <https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/data/Unicode/ligatureMap.data>
(No such file or directory)
** Error: problem of opening/reading ligature file: '<https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/data/Unicode/ligatureMap.data'.>
** Error: problem of opening/reading symbol synonym file: '<https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/data/Unicode/synonymMap.data'.>
Exception: java.io.FileNotFoundException: <https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/data/Unicode/synonymMap.data>
(No such file or directory)
**Error: problem of opening/reading file '<https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/data/misc/removeS.data'.>
Exception: java.io.FileNotFoundException: <https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/data/misc/removeS.data>
(No such file or directory)
** Error: problem of opening/reading Unicode symbol file: '<https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/data/Unicode/symbolMap.data'.>
Exception: java.io.FileNotFoundException: <https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/data/Unicode/symbolMap.data>
(No such file or directory)
** Error: problem of opening/reading Unicode file: '<https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/data/Unicode/unicodeMap.data'.>
Exception: java.io.FileNotFoundException: <https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/data/Unicode/unicodeMap.data>
(No such file or directory)
** Error: problem of opening/reading nonStripMap file: '<https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/data/Unicode/nonStripMap.data'.>
Exception: java.io.FileNotFoundException: <https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/data/Unicode/nonStripMap.data>
(No such file or directory)
Exception: java.io.FileNotFoundException: <https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/data/rules/im.rul>
(No such file or directory)
**Error: problem of opening/reading file '<https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws//data/rules/im.rul'.>
Exception: java.io.FileNotFoundException: <https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/data/rules/im.rul>
(No such file or directory)
**Error: problem of opening/reading file '<https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws//data/rules/im.rul'.>
Exception: java.io.FileNotFoundException: <https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/data/rules/dm.rul>
(No such file or directory)
**Error: problem of opening/reading file '<https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws//data/rules/dm.rul'.>
Exception: java.io.FileNotFoundException: <https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/data/rules/dm.rul>
(No such file or directory)
**Error: problem of opening/reading file '<https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws//data/rules/dm.rul'.>
Exception: java.io.FileNotFoundException: <https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/data/misc/stopWords.data>
(No such file or directory)
** Error: problem of opening/reading stop words file: '<https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/data/misc/stopWords.data'.>
Exception: java.io.FileNotFoundException: <https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/data/misc/nonInfoWords.data>
(No such file or directory)
** Error: problem of opening/reading non-Info words file: '<https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/data/misc/nonInfoWords.data'.>
Exception: java.io.FileNotFoundException: <https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/data/misc/conjunctionWord.data>
(No such file or directory)
** Error: problem of opening/reading conjunction words file: '<https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/data/misc/conjunctionWord.data'.>
** ERR: problem of opening/reading diacritics file: '<https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/data/Unicode/diacriticMap.data'.>
Exception: java.io.FileNotFoundException: <https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/data/Unicode/diacriticMap.data>
(No such file or directory)
Exception: java.io.FileNotFoundException: <https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/data/Unicode/ligatureMap.data>
(No such file or directory)
** Error: problem of opening/reading ligature file: '<https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/data/Unicode/ligatureMap.data'.>
** Error: problem of opening/reading symbol synonym file: '<https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/data/Unicode/synonymMap.data'.>
Exception: java.io.FileNotFoundException: <https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/data/Unicode/synonymMap.data>
(No such file or directory)
**Error: problem of opening/reading file '<https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/data/misc/removeS.data'.>
Exception: java.io.FileNotFoundException: <https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/data/misc/removeS.data>
(No such file or directory)
** Error: problem of opening/reading Unicode symbol file: '<https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/data/Unicode/symbolMap.data'.>
Exception: java.io.FileNotFoundException: <https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/data/Unicode/symbolMap.data>
(No such file or directory)
** Error: problem of opening/reading Unicode file: '<https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/data/Unicode/unicodeMap.data'.>
Exception: java.io.FileNotFoundException: <https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/data/Unicode/unicodeMap.data>
(No such file or directory)
** Error: problem of opening/reading nonStripMap file: '<https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/data/Unicode/nonStripMap.data'.>
Exception: java.io.FileNotFoundException: <https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/data/Unicode/nonStripMap.data>
(No such file or directory)
Exception: java.io.FileNotFoundException: <https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/data/rules/im.rul>
(No such file or directory)
**Error: problem of opening/reading file '<https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws//data/rules/im.rul'.>
Exception: java.io.FileNotFoundException: <https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/data/rules/im.rul>
(No such file or directory)
**Error: problem of opening/reading file '<https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws//data/rules/im.rul'.>
Exception: java.io.FileNotFoundException: <https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/data/rules/dm.rul>
(No such file or directory)
**Error: problem of opening/reading file '<https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws//data/rules/dm.rul'.>
Exception: java.io.FileNotFoundException: <https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/data/rules/dm.rul>
(No such file or directory)
**Error: problem of opening/reading file '<https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws//data/rules/dm.rul'.>
25 Apr 2016 19:37:28  INFO LvgCmdApiResourceImpl - cd <https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/>
25 Apr 2016 19:37:28  INFO TokenizerAnnotatorPTB - Initializing org.apache.ctakes.core.ae.TokenizerAnnotatorPTB
25 Apr 2016 19:37:28  INFO POSTagger - POS tagger model file: org/apache/ctakes/postagger/models/mayo-pos.zip
25 Apr 2016 19:37:29  INFO SentenceDetector - Starting processing.
25 Apr 2016 19:37:29  INFO TokenizerAnnotatorPTB - process(JCas) in org.apache.ctakes.core.ae.TokenizerAnnotatorPTB
25 Apr 2016 19:37:29  INFO LvgAnnotator - process(JCas)
25 Apr 2016 19:37:30  INFO ContextDependentTokenizerAnnotator - process(JCas)
25 Apr 2016 19:37:30  INFO POSTagger - process(JCas)
Null value found in Feature(<Time-Class->, <NULL>)
Null value found in Feature(<Time-Class->, <NULL>)
Null value found in Feature(<Time-Class->, <NULL>)
Null value found in Feature(<Time-Class->, <NULL>)
Null value found in Feature(<Time-Class->, <NULL>)
25 Apr 2016 19:37:31  INFO EventTimeRelationAnnotatorTest - Relation: RelationArgument
   id: 0
   argument: TimeMention
      sofa: _InitialView
      begin: 58
      end: 66
      id: 0
      ontologyConceptArr: <null>
      typeID: 0
      segmentID: <null>
      sentenceID: <null>
      discoveryTechnique: 0
      confidence: 0.0
      polarity: 0
      uncertainty: 0
      conditional: false
      generic: false
      subject: <null>
      historyOf: 0
      originalText: <null>
      date: <null>
      time: <null>
      timeClass: <null>
   role: "Arg1"
   participatesIn: <null>
 RelationArgument
   id: 0
   argument: EventMention
      sofa: _InitialView
      begin: 67
      end: 76
      id: 0
      ontologyConceptArr: <null>
      typeID: 0
      segmentID: <null>
      sentenceID: <null>
      discoveryTechnique: 0
      confidence: 1.3807402
      polarity: 0
      uncertainty: 0
      conditional: false
      generic: false
      subject: <null>
      historyOf: 0
      originalText: <null>
      event: Event
         id: 0
         ontologyConcept: <null>
         mentions: <null>
         discoveryTechnique: 0
         confidence: 0.0
         conditional: false
         generic: false
         subject: <null>
         polarity: 0
         uncertainty: 0
         historyOf: 0
         properties: EventProperties
            contextualModality: <null>
            contextualAspect: <null>
            permanence: <null>
            category: <null>
            aspect: <null>
            docTimeRel: <null>
            degree: <null>
            polarity: 0
   role: "Arg2"
   participatesIn: <null>
 Category: CONTAINS
Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 27.797 sec
Running org.apache.ctakes.temporal.ae.EventEventRelationAnnotatorTest
25 Apr 2016 19:37:35  INFO ClearNLPDependencyParserAE - using Morphy analysis? true
Loading configuration.
Loading feature templates.
Loading lexica.
Loading model:
...........Java HotSpot(TM) 64-Bit Server VM warning: INFO: os::commit_memory(0x0000000744000000,
409993216, 0) failed; error='Cannot allocate memory' (errno=12)
#
# There is insufficient memory for the Java Runtime Environment to continue.
# Native memory allocation (mmap) failed to map 409993216 bytes for committing reserved memory.
# An error report file with more information is saved as:
# <https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/hs_err_pid23006.log>

Results :

Tests run: 1, Failures: 0, Errors: 0, Skipped: 0

[JENKINS] Recording test results
[JENKINS] Archiving disabled

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