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From Apache Jenkins Server <jenk...@builds.apache.org>
Subject Build failed in Jenkins: ctakes-trunk-compiletest #795
Date Mon, 25 Apr 2016 23:23:09 GMT
See <https://builds.apache.org/job/ctakes-trunk-compiletest/795/>

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[INFO] 
[INFO] --- maven-surefire-plugin:2.12.1:test (default-test) @ ctakes-temporal ---
[INFO] Surefire report directory: <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/target/surefire-reports>

-------------------------------------------------------
 T E S T S
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Running org.apache.ctakes.temporal.ae.BackwardsTimeAnnotatorTest
log4j: reset attribute= "false".
log4j: Threshold ="null".
log4j: Retreiving an instance of org.apache.log4j.Logger.
log4j: Setting [ProgressAppender] additivity to [false].
log4j: Level value for ProgressAppender is  [INFO].
log4j: ProgressAppender level set to INFO
log4j: Class name: [org.apache.log4j.ConsoleAppender]
log4j: Parsing layout of class: "org.apache.log4j.PatternLayout"
log4j: Setting property [conversionPattern] to [%m].
log4j: Adding appender named [noEolAppender] to category [ProgressAppender].
log4j: Retreiving an instance of org.apache.log4j.Logger.
log4j: Setting [ProgressDone] additivity to [false].
log4j: Level value for ProgressDone is  [INFO].
log4j: ProgressDone level set to INFO
log4j: Class name: [org.apache.log4j.ConsoleAppender]
log4j: Parsing layout of class: "org.apache.log4j.PatternLayout"
log4j: Setting property [conversionPattern] to [%m%n].
log4j: Adding appender named [eolAppender] to category [ProgressDone].
log4j: Level value for root is  [INFO].
log4j: root level set to INFO
log4j: Class name: [org.apache.log4j.ConsoleAppender]
log4j: Parsing layout of class: "org.apache.log4j.PatternLayout"
log4j: Setting property [conversionPattern] to [%d{dd MMM yyyy HH:mm:ss} %5p %c{1} - %m%n].
log4j: Adding appender named [consoleAppender] to category [root].
25 Apr 2016 23:22:27  INFO ClearNLPDependencyParserAE - using Morphy analysis? true
Loading configuration.
Loading feature templates.
Loading lexica.
Loading model:
........................................................................................
25 Apr 2016 23:22:38  INFO ContextDependentTokenizerAnnotator - Finite state machines loaded.
25 Apr 2016 23:22:38  INFO SentenceDetector - Sentence detector model file: org/apache/ctakes/core/sentdetect/sd-med-model.zip
25 Apr 2016 23:22:38  INFO LvgCmdApiResourceImpl - Loading NLM Norm and Lvg with config file
= /tmp/lvg.properties
25 Apr 2016 23:22:38  INFO LvgCmdApiResourceImpl -   config file absolute path = /tmp/lvg.properties
25 Apr 2016 23:22:38  INFO LvgCmdApiResourceImpl - cwd = <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal>
25 Apr 2016 23:22:38  INFO LvgCmdApiResourceImpl - cd <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal>
Exception: java.io.FileNotFoundException: <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/data/misc/stopWords.data>
(No such file or directory)
** Error: problem of opening/reading stop words file: '<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/data/misc/stopWords.data'.>
Exception: java.io.FileNotFoundException: <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/data/misc/nonInfoWords.data>
(No such file or directory)
** Error: problem of opening/reading non-Info words file: '<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/data/misc/nonInfoWords.data'.>
Exception: java.io.FileNotFoundException: <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/data/misc/conjunctionWord.data>
(No such file or directory)
** Error: problem of opening/reading conjunction words file: '<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/data/misc/conjunctionWord.data'.>
** ERR: problem of opening/reading diacritics file: '<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/data/Unicode/diacriticMap.data'.>
Exception: java.io.FileNotFoundException: <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/data/Unicode/diacriticMap.data>
(No such file or directory)
Exception: java.io.FileNotFoundException: <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/data/Unicode/ligatureMap.data>
(No such file or directory)
** Error: problem of opening/reading ligature file: '<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/data/Unicode/ligatureMap.data'.>
** Error: problem of opening/reading symbol synonym file: '<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/data/Unicode/synonymMap.data'.>
Exception: java.io.FileNotFoundException: <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/data/Unicode/synonymMap.data>
(No such file or directory)
**Error: problem of opening/reading file '<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/data/misc/removeS.data'.>
Exception: java.io.FileNotFoundException: <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/data/misc/removeS.data>
(No such file or directory)
** Error: problem of opening/reading Unicode symbol file: '<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/data/Unicode/symbolMap.data'.>
Exception: java.io.FileNotFoundException: <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/data/Unicode/symbolMap.data>
(No such file or directory)
** Error: problem of opening/reading Unicode file: '<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/data/Unicode/unicodeMap.data'.>
Exception: java.io.FileNotFoundException: <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/data/Unicode/unicodeMap.data>
(No such file or directory)
** Error: problem of opening/reading nonStripMap file: '<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/data/Unicode/nonStripMap.data'.>
Exception: java.io.FileNotFoundException: <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/data/Unicode/nonStripMap.data>
(No such file or directory)
Exception: java.io.FileNotFoundException: <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/data/rules/im.rul>
(No such file or directory)
**Error: problem of opening/reading file '<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal//data/rules/im.rul'.>
Exception: java.io.FileNotFoundException: <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/data/rules/im.rul>
(No such file or directory)
**Error: problem of opening/reading file '<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal//data/rules/im.rul'.>
Exception: java.io.FileNotFoundException: <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/data/rules/dm.rul>
(No such file or directory)
**Error: problem of opening/reading file '<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal//data/rules/dm.rul'.>
Exception: java.io.FileNotFoundException: <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/data/rules/dm.rul>
(No such file or directory)
**Error: problem of opening/reading file '<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal//data/rules/dm.rul'.>
Exception: java.io.FileNotFoundException: <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/data/misc/stopWords.data>
(No such file or directory)
** Error: problem of opening/reading stop words file: '<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/data/misc/stopWords.data'.>
Exception: java.io.FileNotFoundException: <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/data/misc/nonInfoWords.data>
(No such file or directory)
** Error: problem of opening/reading non-Info words file: '<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/data/misc/nonInfoWords.data'.>
Exception: java.io.FileNotFoundException: <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/data/misc/conjunctionWord.data>
(No such file or directory)
** Error: problem of opening/reading conjunction words file: '<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/data/misc/conjunctionWord.data'.>
** ERR: problem of opening/reading diacritics file: '<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/data/Unicode/diacriticMap.data'.>
Exception: java.io.FileNotFoundException: <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/data/Unicode/diacriticMap.data>
(No such file or directory)
Exception: java.io.FileNotFoundException: <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/data/Unicode/ligatureMap.data>
(No such file or directory)
** Error: problem of opening/reading ligature file: '<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/data/Unicode/ligatureMap.data'.>
** Error: problem of opening/reading symbol synonym file: '<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/data/Unicode/synonymMap.data'.>
Exception: java.io.FileNotFoundException: <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/data/Unicode/synonymMap.data>
(No such file or directory)
**Error: problem of opening/reading file '<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/data/misc/removeS.data'.>
Exception: java.io.FileNotFoundException: <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/data/misc/removeS.data>
(No such file or directory)
** Error: problem of opening/reading Unicode symbol file: '<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/data/Unicode/symbolMap.data'.>
Exception: java.io.FileNotFoundException: <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/data/Unicode/symbolMap.data>
(No such file or directory)
** Error: problem of opening/reading Unicode file: '<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/data/Unicode/unicodeMap.data'.>
Exception: java.io.FileNotFoundException: <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/data/Unicode/unicodeMap.data>
(No such file or directory)
** Error: problem of opening/reading nonStripMap file: '<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/data/Unicode/nonStripMap.data'.>
Exception: java.io.FileNotFoundException: <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/data/Unicode/nonStripMap.data>
(No such file or directory)
Exception: java.io.FileNotFoundException: <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/data/rules/im.rul>
(No such file or directory)
**Error: problem of opening/reading file '<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal//data/rules/im.rul'.>
Exception: java.io.FileNotFoundException: <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/data/rules/im.rul>
(No such file or directory)
**Error: problem of opening/reading file '<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal//data/rules/im.rul'.>
Exception: java.io.FileNotFoundException: <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/data/rules/dm.rul>
(No such file or directory)
**Error: problem of opening/reading file '<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal//data/rules/dm.rul'.>
Exception: java.io.FileNotFoundException: <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/data/rules/dm.rul>
(No such file or directory)
**Error: problem of opening/reading file '<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal//data/rules/dm.rul'.>
25 Apr 2016 23:22:38  INFO LvgCmdApiResourceImpl - cd <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal>
25 Apr 2016 23:22:38  INFO TokenizerAnnotatorPTB - Initializing org.apache.ctakes.core.ae.TokenizerAnnotatorPTB
25 Apr 2016 23:22:38  INFO POSTagger - POS tagger model file: org/apache/ctakes/postagger/models/mayo-pos.zip
25 Apr 2016 23:22:39  INFO SentenceDetector - Starting processing.
25 Apr 2016 23:22:39  INFO TokenizerAnnotatorPTB - process(JCas) in org.apache.ctakes.core.ae.TokenizerAnnotatorPTB
25 Apr 2016 23:22:39  INFO LvgAnnotator - process(JCas)
25 Apr 2016 23:22:39  INFO ContextDependentTokenizerAnnotator - process(JCas)
25 Apr 2016 23:22:39  INFO POSTagger - process(JCas)
25 Apr 2016 23:22:39  INFO BackwardsTimeAnnotatorTest - Event: recently
25 Apr 2016 23:22:39  INFO BackwardsTimeAnnotatorTest - Event: 6 months ago
Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 18.037 sec
Running org.apache.ctakes.temporal.ae.DocTimeRelAnnotatorTest
25 Apr 2016 23:22:42  INFO ClearNLPDependencyParserAE - using Morphy analysis? true
Loading configuration.
Loading feature templates.
Loading lexica.
Loading model:
.....Java HotSpot(TM) 64-Bit Server VM warning: INFO: os::commit_memory(0x000000072cc00000,
409993216, 0) failed; error='Cannot allocate memory' (errno=12)
#
# There is insufficient memory for the Java Runtime Environment to continue.
# Native memory allocation (mmap) failed to map 409993216 bytes for committing reserved memory.
# An error report file with more information is saved as:
# <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/hs_err_pid24164.log>

Results :

Tests run: 1, Failures: 0, Errors: 0, Skipped: 0

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[INFO] ------------------------------------------------------------------------
[INFO] Reactor Summary:
[INFO] 
[INFO] Apache cTAKES ..................................... SUCCESS [4.057s]
[INFO] Apache cTAKES common type system .................. SUCCESS [10.088s]
[INFO] Apache cTAKES utils ............................... SUCCESS [2.659s]
[INFO] Apache cTAKES Resources core ...................... SUCCESS [2.913s]
[INFO] Apache cTAKES core ................................ SUCCESS [33.838s]
[INFO] Apache cTAKES Resources pos-tagger ................ SUCCESS [4.209s]
[INFO] Apache cTAKES part-of-speech tagger ............... SUCCESS [4.409s]
[INFO] Apache cTAKES Resources ctakes-chunker-res ........ SUCCESS [1.652s]
[INFO] Apache cTAKES chunker ............................. SUCCESS [3.924s]
[INFO] Apache cTAKES document preprocessor ............... SUCCESS [2.665s]
[INFO] Apache cTAKES Resources dictionary-lookup ......... SUCCESS [14.926s]
[INFO] Apache cTAKES dictionary lookup ................... SUCCESS [3.740s]
[INFO] Apache cTAKES context dependent tokenizer ......... SUCCESS [3.999s]
[INFO] Apache cTAKES Resources lvg ....................... SUCCESS [24.833s]
[INFO] Apache cTAKES LVG lexical tools ................... SUCCESS [3.837s]
[INFO] Apache cTAKES Resources ne-contexts ............... SUCCESS [1.270s]
[INFO] Apache cTAKES named entity contexts ............... SUCCESS [4.265s]
[INFO] Apache cTAKES Resources constituency-parser ....... SUCCESS [1.758s]
[INFO] Apache cTAKES Constituency Parser ................. SUCCESS [2.497s]
[INFO] Apache cTAKES Resources coreference ............... SUCCESS [1.677s]
[INFO] Apache cTAKES Resources relation-extractor ........ SUCCESS [1.689s]
[INFO] Apache cTAKES Resources dependency-parser ......... SUCCESS [3.013s]
[INFO] Apache cTAKES Dependency Parser ................... SUCCESS [28.094s]
[INFO] Apache cTAKES Relation Extractor .................. SUCCESS [9.874s]
[INFO] Apache cTAKES CoReference Resolver ................ SUCCESS [6.260s]
[INFO] Apache cTAKES Resources drug-ner .................. SUCCESS [1.645s]
[INFO] Apache cTAKES Drug NER ............................ SUCCESS [6.174s]
[INFO] Apache cTAKES Resources side-effect ............... SUCCESS [1.391s]
[INFO] Apache cTAKES Side Effects ........................ SUCCESS [8.160s]
[INFO] Apache cTAKES Resources smoking-status ............ SUCCESS [1.407s]
[INFO] Apache cTAKES Smoking Status ...................... SUCCESS [8.888s]
[INFO] Apache cTAKES Resources assertion ................. SUCCESS [1.564s]
[INFO] Apache cTAKES Assertion ........................... SUCCESS [6.266s]
[INFO] Apache cTAKES Resources assertion-zoner ........... SUCCESS [1.368s]
[INFO] Apache cTAKES Assertion's zoner ................... SUCCESS [1.890s]
[INFO] Apache cTAKES Resources temporal .................. SUCCESS [1.313s]
[INFO] Apache cTAKES Resources dictionary-lookup-fast-res  SUCCESS [2.443s]
[INFO] Apache cTAKES dictionary lookup fast .............. SUCCESS [11.742s]
[INFO] Apache cTAKES Resources ctakes-ytex-res ........... SUCCESS [1.501s]
[INFO] Apache cTAKES YTEX ................................ SUCCESS [7.194s]
[INFO] Apache cTAKES YTEX UIMA ........................... SUCCESS [8.737s]
[INFO] Apache cTAKES ctakes-clinical-pipeline ............ SUCCESS [5.761s]
[INFO] Apache cTAKES Temporal Information Extraction ..... FAILURE [42.895s]
[INFO] Apache cTAKES YTEX Web ............................ SKIPPED
[INFO] Apache cTAKES Distribution ........................ SKIPPED
[INFO] Apache cTAKES Regression-test ..................... SKIPPED
[INFO] Apache cTAKES template filler ..................... SKIPPED
[INFO] ctakes-examples ................................... SKIPPED
[INFO] ------------------------------------------------------------------------
[INFO] BUILD FAILURE
[INFO] ------------------------------------------------------------------------
[INFO] Total time: 5:35.229s
[INFO] Finished at: Mon Apr 25 23:22:45 UTC 2016
[INFO] Final Memory: 123M/1490M
[INFO] ------------------------------------------------------------------------
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Waiting for Jenkins to finish collecting data
[ERROR] Failed to execute goal org.apache.maven.plugins:maven-surefire-plugin:2.12.1:test
(default-test) on project ctakes-temporal: Execution default-test of goal org.apache.maven.plugins:maven-surefire-plugin:2.12.1:test
failed: The forked VM terminated without saying properly goodbye. VM crash or System.exit
called ? -> [Help 1]
[ERROR] 
[ERROR] To see the full stack trace of the errors, re-run Maven with the -e switch.
[ERROR] Re-run Maven using the -X switch to enable full debug logging.
[ERROR] 
[ERROR] For more information about the errors and possible solutions, please read the following
articles:
[ERROR] [Help 1] http://cwiki.apache.org/confluence/display/MAVEN/PluginExecutionException
[ERROR] 
[ERROR] After correcting the problems, you can resume the build with the command
[ERROR]   mvn <goals> -rf :ctakes-temporal
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