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From Apache Jenkins Server <jenk...@builds.apache.org>
Subject Build failed in Jenkins: ctakes-trunk-compiletest #782
Date Fri, 11 Mar 2016 22:08:35 GMT
See <https://builds.apache.org/job/ctakes-trunk-compiletest/782/changes>

Changes:

[clin] use the new sentence dectector

[clin] 1. use the newest sentence detector
2. change the data split, so we can test on the real test set
3. normalize timex to string

------------------------------------------
[...truncated 11075 lines...]
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.ProcedureMethodModifier_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.RangeAnnotation'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.RangeAnnotation_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.RomanNumeralAnnotation'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.RomanNumeralAnnotation_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.SemanticArgument'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.SemanticArgument_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.SemanticRoleRelation'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.SemanticRoleRelation_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.SeverityModifier'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.SeverityModifier_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.SignSymptomMention'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.SignSymptomMention_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.SubjectModifier'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.SubjectModifier_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.TimeAnnotation'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.TimeAnnotation_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.TimeMention'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.TimeMention_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.UncertaintyModifier'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.UncertaintyModifier_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textspan.List'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textspan.List_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textspan.LookupWindowAnnotation'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textspan.LookupWindowAnnotation_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textspan.Paragraph'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textspan.Paragraph_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textspan.Segment'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textspan.Segment_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textspan.Sentence'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textspan.Sentence_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.util.Pair'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.util.Pair_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.util.Pairs'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.util.Pairs_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.util.ProbabilityDistribution'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.util.ProbabilityDistribution_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.ytex.uima.types.Date'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.ytex.uima.types.Date_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.ytex.uima.types.DocKey'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.ytex.uima.types.DocKey_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.ytex.uima.types.KeyValuePair'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.ytex.uima.types.KeyValuePair_Type'.
[INFO] 
[INFO] --- maven-compiler-plugin:2.4:compile (default-compile) @ ctakes-ytex-uima ---
[INFO] Compiling 322 source files to <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-ytex-uima/target/classes>
[INFO] 
[INFO] --- maven-resources-plugin:2.5:testResources (default-testResources) @ ctakes-ytex-uima
---
[debug] execute contextualize
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] Copying 1 resource
[INFO] Copying 3 resources
[INFO] Copying 3 resources
[INFO] 
[INFO] --- maven-compiler-plugin:2.4:testCompile (default-testCompile) @ ctakes-ytex-uima
---
[INFO] Compiling 11 source files to <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-ytex-uima/target/test-classes>
[WARNING] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-ytex-uima/src/test/java/org/apache/ctakes/ytex/uima/annotators/SenseDisambiguatorAnnotatorTest.java>:[87,31]
[unchecked] unchecked method invocation: method createConceptGraph in interface ConceptDao
is applied to given types
[WARNING]   required: String,String,String,boolean,Set<String>
  found: <null>,String,String,boolean,Set
<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-ytex-uima/src/test/java/org/apache/ctakes/ytex/uima/annotators/SenseDisambiguatorAnnotatorTest.java>:[89,15]
[unchecked] unchecked conversion
[INFO] 
[INFO] --- maven-surefire-plugin:2.12.1:test (default-test) @ ctakes-ytex-uima ---
[INFO] Tests are skipped.
[JENKINS] Archiving disabled
[INFO]                                                                         
[INFO] ------------------------------------------------------------------------
[INFO] Building Apache cTAKES ctakes-clinical-pipeline 3.2.3-SNAPSHOT
[INFO] ------------------------------------------------------------------------
[INFO] 
[INFO] --- maven-clean-plugin:2.4.1:clean (default-clean) @ ctakes-clinical-pipeline ---
[INFO] 
[INFO] --- maven-remote-resources-plugin:1.4:process (default) @ ctakes-clinical-pipeline
---
[INFO] 
[INFO] --- maven-resources-plugin:2.5:resources (default-resources) @ ctakes-clinical-pipeline
---
[debug] execute contextualize
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-clinical-pipeline/src/main/resources>
[INFO] Copying 3 resources
[INFO] 
[INFO] --- maven-compiler-plugin:2.4:compile (default-compile) @ ctakes-clinical-pipeline
---
[INFO] Compiling 5 source files to <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-clinical-pipeline/target/classes>
[WARNING] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-clinical-pipeline/src/main/java/org/apache/ctakes/clinicalpipeline/ae/ExtractionPrepAnnotator.java>:[152,23]
[unchecked] unchecked call to add(E) as a member of the raw type Set
[WARNING]   where E is a type-variable:
    E extends Object declared in interface Set
<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-clinical-pipeline/src/main/java/org/apache/ctakes/clinicalpipeline/runtime/BagOfAnnotationsGenerator.java>:[92,55]
[unchecked] unchecked cast
[INFO] 
[INFO] --- maven-remote-resources-plugin:1.4:process (default) @ ctakes-clinical-pipeline
---
[INFO] 
[INFO] --- maven-resources-plugin:2.5:resources (default-resources) @ ctakes-clinical-pipeline
---
[debug] execute contextualize
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-clinical-pipeline/src/main/resources>
[INFO] Copying 3 resources
[INFO] Copying 3 resources
[INFO] 
[INFO] --- maven-compiler-plugin:2.4:compile (default-compile) @ ctakes-clinical-pipeline
---
[INFO] Nothing to compile - all classes are up to date
[INFO] 
[INFO] --- maven-resources-plugin:2.5:testResources (default-testResources) @ ctakes-clinical-pipeline
---
[debug] execute contextualize
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-clinical-pipeline/src/test/resources>
[INFO] Copying 3 resources
[INFO] Copying 3 resources
[INFO] 
[INFO] --- maven-compiler-plugin:2.4:testCompile (default-testCompile) @ ctakes-clinical-pipeline
---
[INFO] No sources to compile
[INFO] 
[INFO] --- maven-surefire-plugin:2.12.1:test (default-test) @ ctakes-clinical-pipeline ---
[INFO] Surefire report directory: <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-clinical-pipeline/target/surefire-reports>

-------------------------------------------------------
 T E S T S
-------------------------------------------------------

Results :

Tests run: 0, Failures: 0, Errors: 0, Skipped: 0

[JENKINS] Recording test results
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[INFO]                                                                         
[INFO] ------------------------------------------------------------------------
[INFO] Building Apache cTAKES Temporal Information Extraction 3.2.3-SNAPSHOT
[INFO] ------------------------------------------------------------------------
Downloading: http://repository.apache.org/snapshots/org/apache/ctakes/ctakes-sentdetect-cleartk/3.2.3-SNAPSHOT/maven-metadata.xml
Downloading: http://repository.apache.org/snapshots/org/apache/ctakes/ctakes-sentdetect-cleartk/3.2.3-SNAPSHOT/ctakes-sentdetect-cleartk-3.2.3-SNAPSHOT.pom
[WARNING] The POM for org.apache.ctakes:ctakes-sentdetect-cleartk:jar:3.2.3-SNAPSHOT is missing,
no dependency information available
Downloading: http://repository.apache.org/snapshots/org/apache/ctakes/ctakes-sentdetect-cleartk/3.2.3-SNAPSHOT/ctakes-sentdetect-cleartk-3.2.3-SNAPSHOT.jar
[JENKINS] Archiving disabled
[INFO] ------------------------------------------------------------------------
[INFO] Reactor Summary:
[INFO] 
[INFO] Apache cTAKES ..................................... SUCCESS [1.885s]
[INFO] Apache cTAKES common type system .................. SUCCESS [10.162s]
[INFO] Apache cTAKES utils ............................... SUCCESS [2.458s]
[INFO] Apache cTAKES Resources core ...................... SUCCESS [0.707s]
[INFO] Apache cTAKES core ................................ SUCCESS [10.779s]
[INFO] Apache cTAKES Resources pos-tagger ................ SUCCESS [0.591s]
[INFO] Apache cTAKES part-of-speech tagger ............... SUCCESS [3.950s]
[INFO] Apache cTAKES Resources ctakes-chunker-res ........ SUCCESS [0.536s]
[INFO] Apache cTAKES chunker ............................. SUCCESS [1.553s]
[INFO] Apache cTAKES document preprocessor ............... SUCCESS [1.825s]
[INFO] Apache cTAKES Resources dictionary-lookup ......... SUCCESS [13.091s]
[INFO] Apache cTAKES dictionary lookup ................... SUCCESS [2.941s]
[INFO] Apache cTAKES context dependent tokenizer ......... SUCCESS [2.716s]
[INFO] Apache cTAKES Resources lvg ....................... SUCCESS [51.637s]
[INFO] Apache cTAKES LVG lexical tools ................... SUCCESS [3.172s]
[INFO] Apache cTAKES Resources ne-contexts ............... SUCCESS [0.483s]
[INFO] Apache cTAKES named entity contexts ............... SUCCESS [2.250s]
[INFO] Apache cTAKES Resources constituency-parser ....... SUCCESS [0.877s]
[INFO] Apache cTAKES Constituency Parser ................. SUCCESS [1.442s]
[INFO] Apache cTAKES Resources coreference ............... SUCCESS [0.682s]
[INFO] Apache cTAKES Resources relation-extractor ........ SUCCESS [0.692s]
[INFO] Apache cTAKES Resources dependency-parser ......... SUCCESS [0.971s]
[INFO] Apache cTAKES Dependency Parser ................... SUCCESS [22.042s]
[INFO] Apache cTAKES Relation Extractor .................. SUCCESS [7.613s]
[INFO] Apache cTAKES CoReference Resolver ................ SUCCESS [9.464s]
[INFO] Apache cTAKES Resources drug-ner .................. SUCCESS [0.552s]
[INFO] Apache cTAKES Drug NER ............................ SUCCESS [4.648s]
[INFO] Apache cTAKES Resources side-effect ............... SUCCESS [0.646s]
[INFO] Apache cTAKES Side Effects ........................ SUCCESS [5.815s]
[INFO] Apache cTAKES Resources smoking-status ............ SUCCESS [0.625s]
[INFO] Apache cTAKES Smoking Status ...................... SUCCESS [7.667s]
[INFO] Apache cTAKES Resources assertion ................. SUCCESS [0.818s]
[INFO] Apache cTAKES Assertion ........................... SUCCESS [5.548s]
[INFO] Apache cTAKES Resources assertion-zoner ........... SUCCESS [0.646s]
[INFO] Apache cTAKES Assertion's zoner ................... SUCCESS [1.212s]
[INFO] Apache cTAKES Resources temporal .................. SUCCESS [0.738s]
[INFO] Apache cTAKES Resources dictionary-lookup-fast-res  SUCCESS [1.196s]
[INFO] Apache cTAKES dictionary lookup fast .............. SUCCESS [7.109s]
[INFO] Apache cTAKES Resources ctakes-ytex-res ........... SUCCESS [0.899s]
[INFO] Apache cTAKES YTEX ................................ SUCCESS [10.605s]
[INFO] Apache cTAKES YTEX UIMA ........................... SUCCESS [8.097s]
[INFO] Apache cTAKES ctakes-clinical-pipeline ............ SUCCESS [4.307s]
[INFO] Apache cTAKES Temporal Information Extraction ..... FAILURE [1.665s]
[INFO] Apache cTAKES YTEX Web ............................ SKIPPED
[INFO] Apache cTAKES Distribution ........................ SKIPPED
[INFO] Apache cTAKES Regression-test ..................... SKIPPED
[INFO] Apache cTAKES template filler ..................... SKIPPED
[INFO] ctakes-examples ................................... SKIPPED
[INFO] ------------------------------------------------------------------------
[INFO] BUILD FAILURE
[INFO] ------------------------------------------------------------------------
[INFO] Total time: 3:45.090s
[INFO] Finished at: Fri Mar 11 22:08:13 UTC 2016
[INFO] Final Memory: 94M/586M
[INFO] ------------------------------------------------------------------------
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Waiting for Jenkins to finish collecting data
[ERROR] Failed to execute goal on project ctakes-temporal: Could not resolve dependencies
for project org.apache.ctakes:ctakes-temporal:jar:3.2.3-SNAPSHOT: Could not find artifact
org.apache.ctakes:ctakes-sentdetect-cleartk:jar:3.2.3-SNAPSHOT in Nexus (http://repository.apache.org/snapshots)
-> [Help 1]
[ERROR] 
[ERROR] To see the full stack trace of the errors, re-run Maven with the -e switch.
[ERROR] Re-run Maven using the -X switch to enable full debug logging.
[ERROR] 
[ERROR] For more information about the errors and possible solutions, please read the following
articles:
[ERROR] [Help 1] http://cwiki.apache.org/confluence/display/MAVEN/DependencyResolutionException
[ERROR] 
[ERROR] After correcting the problems, you can resume the build with the command
[ERROR]   mvn <goals> -rf :ctakes-temporal
Sending e-mails to: notifications@ctakes.apache.org clin@apache.org
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