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From "Fedor Nikolaev (JIRA)" <j...@apache.org>
Subject [jira] [Commented] (CTAKES-388) URI is not hierarchical when attempting to obtain LookupDesc_Db.xml within JAR
Date Fri, 27 Nov 2015 03:16:11 GMT

    [ https://issues.apache.org/jira/browse/CTAKES-388?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanel&focusedCommentId=15029374#comment-15029374
] 

Fedor Nikolaev commented on CTAKES-388:
---------------------------------------

How this is supposed to work?
{code:java}
      InputStream lookUpStream = UmlsDictionaryLookupAnnotator.class.getClassLoader().getResourceAsStream("org/apache/ctakes/dictionary/lookup/LookupDesc_Db.xml");{code}
when resources are not copied to jar in ctakes-dictionary-lookup-res?
{code:xml}
					<artifactId>maven-jar-plugin</artifactId>
					<version>2.4</version>
					<configuration>
			          <includes>
			          <!-- Dictionary lookup Resources that are unpacked
			          automatically by maven
			          	are not jar'd and included in the bin distro
			          	by default please download them from SF if needed. 
			           -->
			            <include>**/*.class</include>
			            <include>**/types/*.xml</include>			            
			            <include>**/META-INF/**</include>
			           
			          </includes>
	        		</configuration>{code}
Right now I am having NullPointerException when I am running {{mvn exec:java -Dexec.mainClass=org.apache.ctakes.clinicalpipeline.ClinicalPipelineFactory}}
because of this.

> URI is not hierarchical when attempting to obtain LookupDesc_Db.xml within JAR
> ------------------------------------------------------------------------------
>
>                 Key: CTAKES-388
>                 URL: https://issues.apache.org/jira/browse/CTAKES-388
>             Project: cTAKES
>          Issue Type: Improvement
>          Components: ctakes-dictionary-lookup
>    Affects Versions: 3.2.2
>         Environment: MacOSX 10.9.5, cTAKES 3.2.3-SNAPSHOT, Apache Spark 1.5.1, Apache
Hadoop 2.4.0
>            Reporter: Lewis John McGibbney
>             Fix For: 3.2.3
>
>         Attachments: CTAKES-388.patch
>
>
> This issue is extremely similar to CTAKES-385 where the is an attempt to load a resource
(in this case LookupDesc_Db.xml) as a File instead of an InputStream.



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