ctakes-notifications mailing list archives

Site index · List index
Message view « Date » · « Thread »
Top « Date » · « Thread »
From Apache Jenkins Server <jenk...@builds.apache.org>
Subject Build failed in Jenkins: ctakes-trunk-compiletest #737
Date Mon, 16 Nov 2015 22:30:28 GMT
See <https://builds.apache.org/job/ctakes-trunk-compiletest/737/changes>

Changes:

[chenpei] CTAKES-385 - Thanks Lewis John McGibbney for the Patch.

------------------------------------------
[...truncated 10881 lines...]
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.MedicationDosageModifier'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.MedicationDosageModifier_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.MedicationDurationModifier'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.MedicationDurationModifier_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.MedicationEventMention'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.MedicationEventMention_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.MedicationFormModifier'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.MedicationFormModifier_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.MedicationFrequencyModifier'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.MedicationFrequencyModifier_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.MedicationMention'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.MedicationMention_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.MedicationRouteModifier'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.MedicationRouteModifier_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.MedicationStatusChangeModifier'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.MedicationStatusChangeModifier_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.MedicationStrengthModifier'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.MedicationStrengthModifier_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.Modifier'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.Modifier_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.PersonTitleAnnotation'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.PersonTitleAnnotation_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.PolarityModifier'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.PolarityModifier_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.Predicate'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.Predicate_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.ProcedureDeviceModifier'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.ProcedureDeviceModifier_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.ProcedureMention'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.ProcedureMention_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.ProcedureMethodModifier'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.ProcedureMethodModifier_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.RangeAnnotation'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.RangeAnnotation_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.RomanNumeralAnnotation'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.RomanNumeralAnnotation_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.SemanticArgument'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.SemanticArgument_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.SemanticRoleRelation'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.SemanticRoleRelation_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.SeverityModifier'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.SeverityModifier_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.SignSymptomMention'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.SignSymptomMention_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.SubjectModifier'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.SubjectModifier_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.TimeAnnotation'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.TimeAnnotation_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.TimeMention'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.TimeMention_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.UncertaintyModifier'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.UncertaintyModifier_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textspan.List'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textspan.List_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textspan.LookupWindowAnnotation'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textspan.LookupWindowAnnotation_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textspan.Paragraph'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textspan.Paragraph_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textspan.Segment'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textspan.Segment_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textspan.Sentence'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textspan.Sentence_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.util.Pair'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.util.Pair_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.util.Pairs'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.util.Pairs_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.util.ProbabilityDistribution'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.util.ProbabilityDistribution_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.ytex.uima.types.Date'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.ytex.uima.types.Date_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.ytex.uima.types.DocKey'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.ytex.uima.types.DocKey_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.ytex.uima.types.KeyValuePair'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.ytex.uima.types.KeyValuePair_Type'.
[INFO] 
[INFO] --- maven-compiler-plugin:2.4:compile (default-compile) @ ctakes-ytex-uima ---
[INFO] Compiling 285 source files to <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-ytex-uima/target/classes>
[INFO] 
[INFO] --- maven-resources-plugin:2.5:testResources (default-testResources) @ ctakes-ytex-uima
---
[debug] execute contextualize
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] Copying 1 resource
[INFO] Copying 3 resources
[INFO] Copying 3 resources
[INFO] 
[INFO] --- maven-compiler-plugin:2.4:testCompile (default-testCompile) @ ctakes-ytex-uima
---
[INFO] Compiling 11 source files to <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-ytex-uima/target/test-classes>
[WARNING] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-ytex-uima/src/test/java/org/apache/ctakes/ytex/uima/annotators/SenseDisambiguatorAnnotatorTest.java>:[89,15]
[unchecked] unchecked conversion
[INFO] 
[INFO] --- maven-surefire-plugin:2.12.1:test (default-test) @ ctakes-ytex-uima ---
[INFO] Tests are skipped.
[JENKINS] Archiving disabled
[INFO]                                                                         
[INFO] ------------------------------------------------------------------------
[INFO] Building Apache cTAKES ctakes-clinical-pipeline 3.2.3-SNAPSHOT
[INFO] ------------------------------------------------------------------------
[INFO] 
[INFO] --- maven-clean-plugin:2.4.1:clean (default-clean) @ ctakes-clinical-pipeline ---
[INFO] 
[INFO] --- maven-remote-resources-plugin:1.4:process (default) @ ctakes-clinical-pipeline
---
[INFO] 
[INFO] --- maven-resources-plugin:2.5:resources (default-resources) @ ctakes-clinical-pipeline
---
[debug] execute contextualize
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-clinical-pipeline/src/main/resources>
[INFO] Copying 3 resources
[INFO] 
[INFO] --- maven-compiler-plugin:2.4:compile (default-compile) @ ctakes-clinical-pipeline
---
[INFO] Compiling 5 source files to <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-clinical-pipeline/target/classes>
[INFO] -------------------------------------------------------------
[ERROR] COMPILATION ERROR : 
[INFO] -------------------------------------------------------------
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-clinical-pipeline/src/main/java/org/apache/ctakes/clinicalpipeline/runtime/BagOfAnnotationsGenerator.java>:[92,55]
[unchecked] unchecked cast
[ERROR]   required: Class<T>
  found:    Type
  where T is a type-variable:
    T extends Annotation declared in class BagOfAnnotationsGenerator
<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-clinical-pipeline/src/main/java/org/apache/ctakes/clinicalpipeline/ClinicalPipelineFactory.java>:[107,58]
error: unreported exception MalformedURLException; must be caught or declared to be thrown
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-clinical-pipeline/src/main/java/org/apache/ctakes/clinicalpipeline/ae/ExtractionPrepAnnotator.java>:[152,23]
[unchecked] unchecked call to add(E) as a member of the raw type Set
[INFO] 3 errors 
[INFO] -------------------------------------------------------------
[JENKINS] Archiving disabled
[INFO] ------------------------------------------------------------------------
[INFO] Reactor Summary:
[INFO] 
[INFO] Apache cTAKES ..................................... SUCCESS [1.625s]
[INFO] Apache cTAKES common type system .................. SUCCESS [7.512s]
[INFO] Apache cTAKES utils ............................... SUCCESS [4.893s]
[INFO] Apache cTAKES Resources core ...................... SUCCESS [0.742s]
[INFO] Apache cTAKES core ................................ SUCCESS [14.598s]
[INFO] Apache cTAKES Resources pos-tagger ................ SUCCESS [0.738s]
[INFO] Apache cTAKES part-of-speech tagger ............... SUCCESS [3.904s]
[INFO] Apache cTAKES Resources ctakes-chunker-res ........ SUCCESS [1.861s]
[INFO] Apache cTAKES chunker ............................. SUCCESS [2.546s]
[INFO] Apache cTAKES document preprocessor ............... SUCCESS [2.005s]
[INFO] Apache cTAKES Resources dictionary-lookup ......... SUCCESS [9.385s]
[INFO] Apache cTAKES dictionary lookup ................... SUCCESS [2.861s]
[INFO] Apache cTAKES context dependent tokenizer ......... SUCCESS [1.281s]
[INFO] Apache cTAKES Resources lvg ....................... SUCCESS [18.899s]
[INFO] Apache cTAKES LVG lexical tools ................... SUCCESS [3.314s]
[INFO] Apache cTAKES Resources ne-contexts ............... SUCCESS [0.743s]
[INFO] Apache cTAKES named entity contexts ............... SUCCESS [2.659s]
[INFO] Apache cTAKES Resources constituency-parser ....... SUCCESS [1.007s]
[INFO] Apache cTAKES Constituency Parser ................. SUCCESS [1.419s]
[INFO] Apache cTAKES Resources coreference ............... SUCCESS [0.806s]
[INFO] Apache cTAKES Resources relation-extractor ........ SUCCESS [0.745s]
[INFO] Apache cTAKES Resources dependency-parser ......... SUCCESS [1.185s]
[INFO] Apache cTAKES Dependency Parser ................... SUCCESS [32.720s]
[INFO] Apache cTAKES Relation Extractor .................. SUCCESS [8.277s]
[INFO] Apache cTAKES CoReference Resolver ................ SUCCESS [5.412s]
[INFO] Apache cTAKES Resources drug-ner .................. SUCCESS [0.869s]
[INFO] Apache cTAKES Drug NER ............................ SUCCESS [5.508s]
[INFO] Apache cTAKES Resources side-effect ............... SUCCESS [1.912s]
[INFO] Apache cTAKES Side Effects ........................ SUCCESS [6.549s]
[INFO] Apache cTAKES Resources smoking-status ............ SUCCESS [0.844s]
[INFO] Apache cTAKES Smoking Status ...................... SUCCESS [6.129s]
[INFO] Apache cTAKES Resources assertion ................. SUCCESS [0.899s]
[INFO] Apache cTAKES Assertion ........................... SUCCESS [5.804s]
[INFO] Apache cTAKES Resources assertion-zoner ........... SUCCESS [0.824s]
[INFO] Apache cTAKES Assertion's zoner ................... SUCCESS [1.382s]
[INFO] Apache cTAKES Resources temporal .................. SUCCESS [0.758s]
[INFO] Apache cTAKES Resources dictionary-lookup-fast-res  SUCCESS [1.530s]
[INFO] Apache cTAKES dictionary lookup fast .............. SUCCESS [8.400s]
[INFO] Apache cTAKES Resources ctakes-ytex-res ........... SUCCESS [0.773s]
[INFO] Apache cTAKES YTEX ................................ SUCCESS [6.291s]
[INFO] Apache cTAKES YTEX UIMA ........................... SUCCESS [7.080s]
[INFO] Apache cTAKES ctakes-clinical-pipeline ............ FAILURE [4.425s]
[INFO] Apache cTAKES Temporal Information Extraction ..... SKIPPED
[INFO] Apache cTAKES YTEX Web ............................ SKIPPED
[INFO] Apache cTAKES Distribution ........................ SKIPPED
[INFO] Apache cTAKES Regression-test ..................... SKIPPED
[INFO] Apache cTAKES template filler ..................... SKIPPED
[INFO] ctakes-examples ................................... SKIPPED
[INFO] ------------------------------------------------------------------------
[INFO] BUILD FAILURE
[INFO] ------------------------------------------------------------------------
[INFO] Total time: 3:26.746s
[INFO] Finished at: Mon Nov 16 22:25:06 UTC 2015
[INFO] Final Memory: 84M/385M
[INFO] ------------------------------------------------------------------------
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
Waiting for Jenkins to finish collecting data
[ERROR] Failed to execute goal org.apache.maven.plugins:maven-compiler-plugin:2.4:compile
(default-compile) on project ctakes-clinical-pipeline: Compilation failure: Compilation failure:
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-clinical-pipeline/src/main/java/org/apache/ctakes/clinicalpipeline/runtime/BagOfAnnotationsGenerator.java>:[92,55]
[unchecked] unchecked cast
[ERROR] required: Class<T>
[ERROR] found:    Type
[ERROR] where T is a type-variable:
[ERROR] T extends Annotation declared in class BagOfAnnotationsGenerator
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-clinical-pipeline/src/main/java/org/apache/ctakes/clinicalpipeline/ClinicalPipelineFactory.java>:[107,58]
error: unreported exception MalformedURLException; must be caught or declared to be thrown
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-clinical-pipeline/src/main/java/org/apache/ctakes/clinicalpipeline/ae/ExtractionPrepAnnotator.java>:[152,23]
[unchecked] unchecked call to add(E) as a member of the raw type Set
[ERROR] -> [Help 1]
[ERROR] 
[ERROR] To see the full stack trace of the errors, re-run Maven with the -e switch.
[ERROR] Re-run Maven using the -X switch to enable full debug logging.
[ERROR] 
[ERROR] For more information about the errors and possible solutions, please read the following
articles:
[ERROR] [Help 1] http://cwiki.apache.org/confluence/display/MAVEN/MojoFailureException
[ERROR] 
[ERROR] After correcting the problems, you can resume the build with the command
[ERROR]   mvn <goals> -rf :ctakes-clinical-pipeline
Sending e-mails to: notifications@ctakes.apache.org
channel stopped

Mime
View raw message