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From Apache Jenkins Server <jenk...@builds.apache.org>
Subject Build failed in Jenkins: ctakes-trunk-compiletest #715
Date Mon, 28 Sep 2015 21:30:58 GMT
See <https://builds.apache.org/job/ctakes-trunk-compiletest/715/changes>

Changes:

[clin] referring to the fast dictionary lookup, and mallet in the temporal pom file

------------------------------------------
[...truncated 10905 lines...]
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.ProcedureMethodModifier'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.ProcedureMethodModifier_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.RangeAnnotation'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.RangeAnnotation_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.RomanNumeralAnnotation'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.RomanNumeralAnnotation_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.SemanticArgument'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.SemanticArgument_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.SemanticRoleRelation'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.SemanticRoleRelation_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.SeverityModifier'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.SeverityModifier_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.SignSymptomMention'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.SignSymptomMention_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.SubjectModifier'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.SubjectModifier_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.TimeAnnotation'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.TimeAnnotation_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.TimeMention'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.TimeMention_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.UncertaintyModifier'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.UncertaintyModifier_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textspan.List'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textspan.List_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textspan.LookupWindowAnnotation'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textspan.LookupWindowAnnotation_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textspan.Paragraph'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textspan.Paragraph_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textspan.Segment'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textspan.Segment_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textspan.Sentence'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textspan.Sentence_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.util.Pair'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.util.Pair_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.util.Pairs'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.util.Pairs_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.util.ProbabilityDistribution'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.util.ProbabilityDistribution_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.ytex.uima.types.Date'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.ytex.uima.types.Date_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.ytex.uima.types.DocKey'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.ytex.uima.types.DocKey_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.ytex.uima.types.KeyValuePair'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.ytex.uima.types.KeyValuePair_Type'.
[INFO] 
[INFO] --- maven-compiler-plugin:2.4:compile (default-compile) @ ctakes-ytex-uima ---
[INFO] Compiling 322 source files to <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-ytex-uima/target/classes>
[INFO] 
[INFO] --- maven-resources-plugin:2.5:testResources (default-testResources) @ ctakes-ytex-uima
---
[debug] execute contextualize
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] Copying 1 resource
[INFO] Copying 3 resources
[INFO] Copying 3 resources
[INFO] 
[INFO] --- maven-compiler-plugin:2.4:testCompile (default-testCompile) @ ctakes-ytex-uima
---
[INFO] Compiling 11 source files to <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-ytex-uima/target/test-classes>
[WARNING] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-ytex-uima/src/test/java/org/apache/ctakes/ytex/uima/annotators/SenseDisambiguatorAnnotatorTest.java>:[89,15]
[unchecked] unchecked conversion
[INFO] 
[INFO] --- maven-surefire-plugin:2.12.1:test (default-test) @ ctakes-ytex-uima ---
[INFO] Tests are skipped.
[JENKINS] Archiving disabled
[INFO]                                                                         
[INFO] ------------------------------------------------------------------------
[INFO] Building Apache cTAKES ctakes-clinical-pipeline 3.2.3-SNAPSHOT
[INFO] ------------------------------------------------------------------------
[INFO] 
[INFO] --- maven-clean-plugin:2.4.1:clean (default-clean) @ ctakes-clinical-pipeline ---
[INFO] 
[INFO] --- maven-remote-resources-plugin:1.4:process (default) @ ctakes-clinical-pipeline
---
[INFO] 
[INFO] --- maven-resources-plugin:2.5:resources (default-resources) @ ctakes-clinical-pipeline
---
[debug] execute contextualize
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-clinical-pipeline/src/main/resources>
[INFO] Copying 3 resources
[INFO] 
[INFO] --- maven-compiler-plugin:2.4:compile (default-compile) @ ctakes-clinical-pipeline
---
[INFO] Compiling 5 source files to <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-clinical-pipeline/target/classes>
[WARNING] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-clinical-pipeline/src/main/java/org/apache/ctakes/clinicalpipeline/runtime/BagOfAnnotationsGenerator.java>:[92,55]
[unchecked] unchecked cast
[WARNING]   required: Class<T>
  found:    Type
  where T is a type-variable:
    T extends Annotation declared in class BagOfAnnotationsGenerator
<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-clinical-pipeline/src/main/java/org/apache/ctakes/clinicalpipeline/ae/ExtractionPrepAnnotator.java>:[152,23]
[unchecked] unchecked call to add(E) as a member of the raw type Set
[INFO] 
[INFO] --- maven-remote-resources-plugin:1.4:process (default) @ ctakes-clinical-pipeline
---
[INFO] 
[INFO] --- maven-resources-plugin:2.5:resources (default-resources) @ ctakes-clinical-pipeline
---
[debug] execute contextualize
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-clinical-pipeline/src/main/resources>
[INFO] Copying 3 resources
[INFO] Copying 3 resources
[INFO] 
[INFO] --- maven-compiler-plugin:2.4:compile (default-compile) @ ctakes-clinical-pipeline
---
[INFO] Nothing to compile - all classes are up to date
[INFO] 
[INFO] --- maven-resources-plugin:2.5:testResources (default-testResources) @ ctakes-clinical-pipeline
---
[debug] execute contextualize
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-clinical-pipeline/src/test/resources>
[INFO] Copying 3 resources
[INFO] Copying 3 resources
[INFO] 
[INFO] --- maven-compiler-plugin:2.4:testCompile (default-testCompile) @ ctakes-clinical-pipeline
---
[INFO] No sources to compile
[INFO] 
[INFO] --- maven-surefire-plugin:2.12.1:test (default-test) @ ctakes-clinical-pipeline ---
[INFO] Surefire report directory: <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-clinical-pipeline/target/surefire-reports>

-------------------------------------------------------
 T E S T S
-------------------------------------------------------

Results :

Tests run: 0, Failures: 0, Errors: 0, Skipped: 0

[JENKINS] Recording test results
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[INFO]                                                                         
[INFO] ------------------------------------------------------------------------
[INFO] Building Apache cTAKES Temporal Information Extraction 3.2.3-SNAPSHOT
[INFO] ------------------------------------------------------------------------
Downloading: http://repository.apache.org/snapshots/org/cleartk/cleartk-ml-mallet/2.0.1-SNAPSHOT/maven-metadata.xml
Downloading: http://repository.apache.org/snapshots/org/cleartk/cleartk-ml-mallet/2.0.1-SNAPSHOT/cleartk-ml-mallet-2.0.1-SNAPSHOT.pom
[WARNING] The POM for org.cleartk:cleartk-ml-mallet:jar:2.0.1-SNAPSHOT is missing, no dependency
information available
Downloading: http://repository.apache.org/snapshots/org/cleartk/cleartk-ml-mallet/2.0.1-SNAPSHOT/cleartk-ml-mallet-2.0.1-SNAPSHOT.jar
[JENKINS] Archiving disabled
[INFO] ------------------------------------------------------------------------
[INFO] Reactor Summary:
[INFO] 
[INFO] Apache cTAKES ..................................... SUCCESS [2.302s]
[INFO] Apache cTAKES common type system .................. SUCCESS [8.421s]
[INFO] Apache cTAKES utils ............................... SUCCESS [2.441s]
[INFO] Apache cTAKES Resources core ...................... SUCCESS [0.844s]
[INFO] Apache cTAKES core ................................ SUCCESS [13.798s]
[INFO] Apache cTAKES Resources pos-tagger ................ SUCCESS [0.772s]
[INFO] Apache cTAKES part-of-speech tagger ............... SUCCESS [3.928s]
[INFO] Apache cTAKES Resources ctakes-chunker-res ........ SUCCESS [0.775s]
[INFO] Apache cTAKES chunker ............................. SUCCESS [1.712s]
[INFO] Apache cTAKES document preprocessor ............... SUCCESS [2.296s]
[INFO] Apache cTAKES Resources dictionary-lookup ......... SUCCESS [11.042s]
[INFO] Apache cTAKES dictionary lookup ................... SUCCESS [2.988s]
[INFO] Apache cTAKES context dependent tokenizer ......... SUCCESS [1.345s]
[INFO] Apache cTAKES Resources lvg ....................... SUCCESS [27.788s]
[INFO] Apache cTAKES LVG lexical tools ................... SUCCESS [3.619s]
[INFO] Apache cTAKES Resources ne-contexts ............... SUCCESS [0.854s]
[INFO] Apache cTAKES named entity contexts ............... SUCCESS [3.082s]
[INFO] Apache cTAKES Resources constituency-parser ....... SUCCESS [1.154s]
[INFO] Apache cTAKES Constituency Parser ................. SUCCESS [1.537s]
[INFO] Apache cTAKES Resources coreference ............... SUCCESS [0.962s]
[INFO] Apache cTAKES Resources relation-extractor ........ SUCCESS [0.907s]
[INFO] Apache cTAKES Resources dependency-parser ......... SUCCESS [1.344s]
[INFO] Apache cTAKES Dependency Parser ................... SUCCESS [32.851s]
[INFO] Apache cTAKES Relation Extractor .................. SUCCESS [9.552s]
[INFO] Apache cTAKES CoReference Resolver ................ SUCCESS [5.494s]
[INFO] Apache cTAKES Resources drug-ner .................. SUCCESS [1.617s]
[INFO] Apache cTAKES Drug NER ............................ SUCCESS [5.722s]
[INFO] Apache cTAKES Resources side-effect ............... SUCCESS [1.034s]
[INFO] Apache cTAKES Side Effects ........................ SUCCESS [6.868s]
[INFO] Apache cTAKES Resources smoking-status ............ SUCCESS [0.986s]
[INFO] Apache cTAKES Smoking Status ...................... SUCCESS [6.862s]
[INFO] Apache cTAKES Resources assertion ................. SUCCESS [0.941s]
[INFO] Apache cTAKES Assertion ........................... SUCCESS [6.768s]
[INFO] Apache cTAKES Resources assertion-zoner ........... SUCCESS [1.283s]
[INFO] Apache cTAKES Assertion's zoner ................... SUCCESS [2.110s]
[INFO] Apache cTAKES Resources temporal .................. SUCCESS [1.124s]
[INFO] Apache cTAKES Resources dictionary-lookup-fast-res  SUCCESS [2.083s]
[INFO] Apache cTAKES dictionary lookup fast .............. SUCCESS [8.906s]
[INFO] Apache cTAKES Resources ctakes-ytex-res ........... SUCCESS [1.304s]
[INFO] Apache cTAKES YTEX ................................ SUCCESS [8.501s]
[INFO] Apache cTAKES YTEX UIMA ........................... SUCCESS [7.732s]
[INFO] Apache cTAKES ctakes-clinical-pipeline ............ SUCCESS [6.353s]
[INFO] Apache cTAKES Temporal Information Extraction ..... FAILURE [6.139s]
[INFO] Apache cTAKES YTEX Web ............................ SKIPPED
[INFO] Apache cTAKES Distribution ........................ SKIPPED
[INFO] Apache cTAKES Regression-test ..................... SKIPPED
[INFO] Apache cTAKES template filler ..................... SKIPPED
[INFO] ctakes-examples ................................... SKIPPED
[INFO] ------------------------------------------------------------------------
[INFO] BUILD FAILURE
[INFO] ------------------------------------------------------------------------
[INFO] Total time: 4:05.805s
[INFO] Finished at: Mon Sep 28 21:27:33 UTC 2015
[INFO] Final Memory: 81M/379M
[INFO] ------------------------------------------------------------------------
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[ERROR] Failed to execute goal on project ctakes-temporal: Could not resolve dependencies
for project org.apache.ctakes:ctakes-temporal:jar:3.2.3-SNAPSHOT: Could not find artifact
org.cleartk:cleartk-ml-mallet:jar:2.0.1-SNAPSHOT in Nexus (http://repository.apache.org/snapshots)
-> [Help 1]
[ERROR] 
[ERROR] To see the full stack trace of the errors, re-run Maven with the -e switch.
[ERROR] Re-run Maven using the -X switch to enable full debug logging.
[ERROR] 
[ERROR] For more information about the errors and possible solutions, please read the following
articles:
[ERROR] [Help 1] http://cwiki.apache.org/confluence/display/MAVEN/DependencyResolutionException
[ERROR] 
[ERROR] After correcting the problems, you can resume the build with the command
[ERROR]   mvn <goals> -rf :ctakes-temporal
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