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From "Tomasz Oliwa (JIRA)" <j...@apache.org>
Subject [jira] [Updated] (CTAKES-370) Include smoking status in clinical pipeline
Date Wed, 15 Jul 2015 20:59:04 GMT

     [ https://issues.apache.org/jira/browse/CTAKES-370?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel
]

Tomasz Oliwa updated CTAKES-370:
--------------------------------
    Attachment: AggregatePlaintextFastUMLSProcessor.xml

AggregatePlaintextFastUMLSProcessor.xml with smoking status integrated

> Include smoking status in clinical pipeline
> -------------------------------------------
>
>                 Key: CTAKES-370
>                 URL: https://issues.apache.org/jira/browse/CTAKES-370
>             Project: cTAKES
>          Issue Type: Improvement
>          Components: ctakes-clinical-pipeline, ctakes-smoking-status
>    Affects Versions: 3.2.2
>         Environment: Linux
>            Reporter: Tomasz Oliwa
>            Priority: Minor
>         Attachments: AggregatePlaintextFastUMLSProcessor.xml
>
>
> The smoking status detection can be included in the clinical pipeline. 
> Attached is a AggregatePlaintextFastUMLSProcessor.xml that has the clinical pipeline
+ the smoking status detection integrated.
> Currently cTAKES has smoking status resources that need to have 
> their imports adjusted for any smoking status detection to work. As a workaround, in:
> ProductionPostSentenceAggregate_step1.xml
> change:
> <import name="org.apache.ctakes.core.analysis_engine.TokenizerAnnotator"/>
> <import name="org.apache.ctakes.core.analysis_engine.SentenceDetectorAnnotator"/>
> to the absolute or relative path (depends on the installed system, on my machine it is)
of these annotators:
> <import location="../../../../../../desc/ctakes-core/desc/analysis_engine/TokenizerAnnotator.xml"/>
> <import location="../../../../../../desc/ctakes-core/desc/analysis_engine/SentenceDetectorAnnotator.xml"/>



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