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From Apache Jenkins Server <jenk...@builds.apache.org>
Subject Build failed in Jenkins: ctakes-trunk-package #347
Date Tue, 07 Jul 2015 20:29:35 GMT
See <https://builds.apache.org/job/ctakes-trunk-package/347/>

------------------------------------------
[...truncated 3600 lines...]
A         ctakes-chunker/desc/POSTagger.xml
A         ctakes-chunker/desc/AggregateAE.xml
A         ctakes-chunker/desc/collection_processing_engine
A         ctakes-chunker/desc/Chunker.xml
A         ctakes-chunker/desc/test
A         ctakes-chunker/desc/test/ChunkerAggregate.xml
A         ctakes-chunker/desc/test/ChunkerCPE.xml
A         ctakes-chunker/desc/test/POSTagger.xml
A         ctakes-chunker/desc/test/PhraseTypeChunkerAggregate.xml
A         ctakes-chunker/desc/test/Chunker.xml
A         ctakes-chunker/desc/test/TokenizerAnnotator.xml
A         ctakes-chunker/desc/test/ChunkAdjusterAggregate.xml
A         ctakes-chunker/desc/test/ChunkerCpeUsingPosTagDictionary.xml
A         ctakes-chunker/desc/test/SimpleSegmentAnnotator.xml
A         ctakes-chunker/desc/test/AdjustNounPhraseToIncludeFollowingPPNP.xml
A         ctakes-chunker/desc/SimpleSegmentAnnotator.xml
A         ctakes-chunker/desc/AdjustNounPhraseToIncludeFollowingNP.xml
A         ctakes-chunker/desc/AdjustNounPhraseToIncludeFollowingPPNP.xml
A         ctakes-chunker/desc/AdjustOPhraseToIncludeFollowingO.xml
A         ctakes-chunker/desc/ChunkerAggregate.xml
A         ctakes-chunker/desc/ChunkerCPE.xml
AU        ctakes-chunker/.classpath
A         ctakes-chunker/LICENSE
A         ctakes-chunker/.project
A         ctakes-chunker/scripts
A         ctakes-chunker/scripts/java
A         ctakes-chunker/scripts/java/data
A         ctakes-chunker/scripts/java/data/chunk
A         ctakes-chunker/scripts/java/data/chunk/genia
A         ctakes-chunker/scripts/java/data/chunk/genia/Genia2PTB.java
A         ctakes-chunker/scripts/java/data/chunk/Chunklink2OpenNLP.java
A         ctakes-chunker/scripts/perl
A         ctakes-chunker/scripts/perl/README
A         ctakes-chunker/scripts/groovy
A         ctakes-chunker/scripts/groovy/data
A         ctakes-chunker/scripts/groovy/data/chunk
A         ctakes-chunker/scripts/groovy/data/chunk/TagReport.groovy
A         ctakes-chunker/src
A         ctakes-chunker/src/main
A         ctakes-chunker/src/main/java
A         ctakes-chunker/src/main/java/org
A         ctakes-chunker/src/main/java/org/apache
A         ctakes-chunker/src/main/java/org/apache/ctakes
A         ctakes-chunker/src/main/java/org/apache/ctakes/chunker
A         ctakes-chunker/src/main/java/org/apache/ctakes/chunker/ae
A         ctakes-chunker/src/main/java/org/apache/ctakes/chunker/ae/ChunkCreator.java
A         ctakes-chunker/src/main/java/org/apache/ctakes/chunker/ae/DefaultChunkCreator.java
A         ctakes-chunker/src/main/java/org/apache/ctakes/chunker/ae/PhraseTypeChunkCreator.java
A         ctakes-chunker/src/main/java/org/apache/ctakes/chunker/ae/Chunker.java
A         ctakes-chunker/src/main/java/org/apache/ctakes/chunker/ae/adjuster
A         ctakes-chunker/src/main/java/org/apache/ctakes/chunker/ae/adjuster/ChunkAdjuster.java
A         ctakes-chunker/src/test
A         ctakes-chunker/src/test/resources
A         ctakes-chunker/src/test/resources/data
A         ctakes-chunker/src/test/resources/data/output
A         ctakes-chunker/src/test/resources/data/output/text1.txt.included.used.tag-dictionary.xml
A         ctakes-chunker/src/test/resources/data/output/NotesIIST_RTF.DTD
A         ctakes-chunker/src/test/resources/data/output/text1.txt.included.xml
A         ctakes-chunker/src/test/resources/data/unit-test.opennlp.chunks
A         ctakes-chunker/src/test/resources/data/text-files
A         ctakes-chunker/src/test/resources/data/text-files/text1.txt
A         ctakes-chunker/src/test/resources/data/README
A         ctakes-chunker/src/test/java
A         ctakes-chunker/src/test/java/org
A         ctakes-chunker/src/test/java/org/apache
A         ctakes-chunker/src/test/java/org/apache/ctakes
A         ctakes-chunker/src/test/java/org/apache/ctakes/chunker
A         ctakes-chunker/src/test/java/org/apache/ctakes/chunker/ChunkerTests.java
A         ctakes-chunker/src/test/java/org/apache/ctakes/chunker/ChunkAdjusterTests.java
A         ctakes-chunker/data
A         ctakes-chunker/data/chunk
A         ctakes-chunker/data/chunk/genia
A         ctakes-chunker/data/chunk/genia/README
A         ctakes-chunker/data/chunk/genia/genia.opennlp.chunks
A         ctakes-chunker/data/chunk/combinations
A         ctakes-chunker/data/chunk/ptb
A         ctakes-chunker/data/chunk/ptb/README
A         ctakes-chunker/data/treebank
A         ctakes-chunker/data/treebank/genia
A         ctakes-chunker/data/treebank/genia/README
A         ctakes-chunker/data/treebank/genia/names-00.txt
A         ctakes-chunker/data/treebank/genia/00
A         ctakes-chunker/data/treebank/genia/names-01.txt
A         ctakes-chunker/data/treebank/genia/01
A         ctakes-chunker/pom.xml
A         ctakes-chunker/resources
A         ctakes-chunker/resources/launch
AU        ctakes-chunker/resources/launch/ChunkAdjusterTests.launch
AU        ctakes-chunker/resources/launch/chunker.launch
AU        ctakes-chunker/resources/launch/UIMA_CPE_GUI--chunker.launch
AU        KEYS
A         ctakes-ytex-web
A         ctakes-ytex-web/src
A         ctakes-ytex-web/src/main
A         ctakes-ytex-web/src/main/resources
A         ctakes-ytex-web/src/main/webapp
A         ctakes-ytex-web/src/main/webapp/semanticSearch.xhtml
A         ctakes-ytex-web/src/main/webapp/viewDocument.xhtml
A         ctakes-ytex-web/src/main/webapp/about.xhtml
A         ctakes-ytex-web/src/main/webapp/images
AU        ctakes-ytex-web/src/main/webapp/images/status_blank.gif
AU        ctakes-ytex-web/src/main/webapp/images/new-address-button-disabled.gif
AU        ctakes-ytex-web/src/main/webapp/images/favicon.ico
AU        ctakes-ytex-web/src/main/webapp/images/reset-button.gif
AU        ctakes-ytex-web/src/main/webapp/images/button_bkgnd2.gif
AU        ctakes-ytex-web/src/main/webapp/images/ysm_logo_print.gif
AU        ctakes-ytex-web/src/main/webapp/images/complete-address-button.gif
AU        ctakes-ytex-web/src/main/webapp/images/ysm_home_banner.gif
AU        ctakes-ytex-web/src/main/webapp/images/ctakes_logo.jpg
AU        ctakes-ytex-web/src/main/webapp/images/blue-fade-bkgnd.gif
AU        ctakes-ytex-web/src/main/webapp/images/status_progress.gif
AU        ctakes-ytex-web/src/main/webapp/images/hide-notes-button.gif
AU        ctakes-ytex-web/src/main/webapp/images/view-notes-button.gif
AU        ctakes-ytex-web/src/main/webapp/images/blue-header-fade.gif
AU        ctakes-ytex-web/src/main/webapp/images/status_alert.gif
AU        ctakes-ytex-web/src/main/webapp/images/button_bkgnd.gif
AU        ctakes-ytex-web/src/main/webapp/images/complete-address-button-dis.gif
AU        ctakes-ytex-web/src/main/webapp/images/ysm_logo_print.png
AU        ctakes-ytex-web/src/main/webapp/images/new-address-button.gif
AU        ctakes-ytex-web/src/main/webapp/images/debug.gif
A         ctakes-ytex-web/src/main/webapp/WEB-INF
A         ctakes-ytex-web/src/main/webapp/WEB-INF/inc-content
A         ctakes-ytex-web/src/main/webapp/WEB-INF/inc-content/header.xhtml
A         ctakes-ytex-web/src/main/webapp/WEB-INF/faces-config.xml
A         ctakes-ytex-web/src/main/webapp/WEB-INF/inc-templates
A         ctakes-ytex-web/src/main/webapp/WEB-INF/inc-templates/commonLayout.xhtml
A         ctakes-ytex-web/src/main/webapp/WEB-INF/applicationContext.xml
A         ctakes-ytex-web/src/main/webapp/WEB-INF/web.xml
A         ctakes-ytex-web/src/main/webapp/semanticSim.xhtml
A         ctakes-ytex-web/src/main/webapp/css
A         ctakes-ytex-web/src/main/webapp/css/menuStyle.css
A         ctakes-ytex-web/src/main/webapp/css/mainscript.css
A         ctakes-ytex-web/src/main/webapp/css/images
AU        ctakes-ytex-web/src/main/webapp/css/images/banner_logo.jpg
AU        ctakes-ytex-web/src/main/webapp/css/images/images.jpg
AU        ctakes-ytex-web/src/main/webapp/css/images/bgslice_footer.jpg
AU        ctakes-ytex-web/src/main/webapp/css/images/banner_hdr_address.jpg
AU        ctakes-ytex-web/src/main/webapp/css/images/bgslice_footer.gif
AU        ctakes-ytex-web/src/main/webapp/css/images/blue004.jpg
AU        ctakes-ytex-web/src/main/webapp/css/images/footer_faces.jpg
AU        ctakes-ytex-web/src/main/webapp/css/images/banner_bg.gif
A         ctakes-ytex-web/src/main/webapp/metricCheckboxes.xhtml
A         ctakes-ytex-web/src/main/webapp/timeout.jsp
A         ctakes-ytex-web/src/main/webapp/index.jsp
A         ctakes-ytex-web/src/main/webapp/semanticSimMulti.xhtml
A         ctakes-ytex-web/src/main/java
A         ctakes-ytex-web/src/main/java/org
A         ctakes-ytex-web/src/main/java/org/apache
A         ctakes-ytex-web/src/main/java/org/apache/ctakes
A         ctakes-ytex-web/src/main/java/org/apache/ctakes/ytex
A         ctakes-ytex-web/src/main/java/org/apache/ctakes/ytex/ws
A         ctakes-ytex-web/src/main/java/org/apache/ctakes/ytex/ws/ConceptSimilarityRestService.java
A         ctakes-ytex-web/src/main/java/org/apache/ctakes/ytex/ws/ConceptSimilarityWebService.java
A         ctakes-ytex-web/src/main/java/org/apache/ctakes/ytex/ws/ConceptSimilarityWebServiceImpl.java
A         ctakes-ytex-web/src/main/java/org/apache/ctakes/ytex/ws/SimServiceInfo.java
A         ctakes-ytex-web/src/main/java/org/apache/ctakes/ytex/web
A         ctakes-ytex-web/src/main/java/org/apache/ctakes/ytex/web/search
A         ctakes-ytex-web/src/main/java/org/apache/ctakes/ytex/web/search/ConceptLookupBean.java
A         ctakes-ytex-web/src/main/java/org/apache/ctakes/ytex/web/search/SemanticSimRegistryBean.java
A         ctakes-ytex-web/src/main/java/org/apache/ctakes/ytex/web/search/ConceptFirstWord.java
A         ctakes-ytex-web/src/main/java/org/apache/ctakes/ytex/web/search/DocumentViewBean.java
A         ctakes-ytex-web/src/main/java/org/apache/ctakes/ytex/web/search/SemanticSearchBean.java
A         ctakes-ytex-web/src/main/java/org/apache/ctakes/ytex/web/search/SearchConfigBean.java
A         ctakes-ytex-web/src/main/java/org/apache/ctakes/ytex/web/search/ConceptSearchService.java
A         ctakes-ytex-web/src/main/java/org/apache/ctakes/ytex/web/search/SemanticSimBean.java
A         ctakes-ytex-web/src/main/java/org/apache/ctakes/ytex/web/search/DocumentSearchResult.java
A         ctakes-ytex-web/src/main/java/org/apache/ctakes/ytex/web/search/FullTextSearchBean.java
A         ctakes-ytex-web/src/main/java/org/apache/ctakes/ytex/web/search/SemanticSimServiceBean.java
A         ctakes-ytex-web/src/main/java/org/apache/ctakes/ytex/web/search/ConceptSearchServiceImpl.java
A         ctakes-ytex-web/src/main/java/org/apache/ctakes/ytex/web/search/DocumentSearchService.java
A         ctakes-ytex-web/src/main/java/org/apache/ctakes/ytex/web/search/DocumentSearchServiceImpl.java
A         ctakes-ytex-web/src/main/java/org/apache/ctakes/ytex/web/search/FullTextDocumentViewBean.java
A         ctakes-ytex-web/pom.xml
A         ctakes-ytex-web/README.txt
A         ctakes-ytex-web/.settings
A         ctakes-ytex-web/.settings/.jsdtscope
A         ctakes-ytex-web/.settings/org.eclipse.wst.validation.prefs
A         ctakes-ytex-web/.settings/org.eclipse.wst.common.component
A         ctakes-ytex-web/.settings/org.eclipse.jdt.core.prefs
A         ctakes-ytex-web/.settings/org.eclipse.m2e.core.prefs
A         ctakes-ytex-web/.settings/org.eclipse.wst.jsdt.ui.superType.name
A         ctakes-ytex-web/.settings/org.eclipse.wst.jsdt.ui.superType.container
A         ctakes-ytex-web/.settings/org.eclipse.wst.common.project.facet.core.prefs.xml
A         ctakes-ytex-web/.settings/org.eclipse.core.resources.prefs
A         ctakes-ytex-web/.settings/org.eclipse.wst.common.project.facet.core.xml
A         ctakes-ytex-web/.classpath
A         ctakes-ytex-web/.project
 U        .
At revision 1689732
no change for http://svn.apache.org/repos/asf/ctakes/trunk since the previous build
Parsing POMs
Downloaded artifact http://repo.maven.apache.org/maven2/org/cleartk/cleartk/2.0.0/cleartk-2.0.0.pom
Modules changed, recalculating dependency graph
maven3-agent.jar already up to date
maven3-interceptor.jar already up to date
maven3-interceptor-commons.jar already up to date
[ctakes-trunk-package] $ /home/jenkins/tools/java/latest1.7/bin/java -Xmx2g -Xms256m -XX:MaxPermSize=512m
-cp /jenkins/maven3-agent.jar:/jenkins/tools/hudson.tasks.Maven_MavenInstallation/Maven_3.0.5/boot/plexus-classworlds-2.4.jar
org.jvnet.hudson.maven3.agent.Maven3Main /jenkins/tools/hudson.tasks.Maven_MavenInstallation/Maven_3.0.5
/jenkins/slave.jar /jenkins/maven3-interceptor.jar /jenkins/maven3-interceptor-commons.jar
54818
<===[JENKINS REMOTING CAPACITY]===>   channel started
Executing Maven:  -B -f <https://builds.apache.org/job/ctakes-trunk-package/ws/pom.xml>
-Dmaven.repo.local=/jenkins/maven-repositories/0 clean install -DskipTests=true -pl ctakes,ctakes-utils,ctakes-core,ctakes-type-system,ctakes-pos-tagger,ctakes-chunker,ctakes-preprocessor,ctakes-dictionary-lookup,ctakes-context-tokenizer,ctakes-lvg,ctakes-ne-contexts,ctakes-constituency-parser,ctakes-coreference,ctakes-drug-ner,ctakes-side-effect,ctakes-smoking-status,ctakes-dependency-parser,ctakes-relation-extractor,ctakes-assertion,ctakes-assertion-zoner,ctakes-clinical-pipeline,ctakes-regression-test,ctakes-assertion-res,ctakes-chunker-res,ctakes-constituency-parser-res,ctakes-core-res,ctakes-coreference-res,ctakes-dependency-parser-res,ctakes-dictionary-lookup-res,ctakes-dictionary-lookup-fast,ctakes-dictionary-lookup-fast-res,ctakes-lvg-res,ctakes-pos-tagger-res,ctakes-relation-extractor-res,ctakes-side-effect-res,ctakes-smoking-status-res,ctakes-assertion-zoner-res,ctakes-drug-ner-res,ctakes-ne-contexts-res,ctakes-template-filler,ctakes-examples,ctakes-temporal,ctakes-temporal-res,ctakes-ytex-res,ctakes-ytex,ctakes-ytex-uima,ctakes-ytex-web
[INFO] Scanning for projects...
Downloading: http://repo.maven.apache.org/maven2/org/apache/maven/wagon/wagon-http-lightweight/2.2/wagon-http-lightweight-2.2.pom
Downloaded: http://repo.maven.apache.org/maven2/org/apache/maven/wagon/wagon-http-lightweight/2.2/wagon-http-lightweight-2.2.pom
(3 KB at 10.6 KB/sec)
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Downloading: http://repo.maven.apache.org/maven2/org/jsoup/jsoup/1.6.1/jsoup-1.6.1.pom
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at 130.6 KB/sec)
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Downloading: http://repo.maven.apache.org/maven2/org/apache/maven/wagon/wagon-http-lightweight/2.2/wagon-http-lightweight-2.2.jar
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Downloading: http://repo.maven.apache.org/maven2/org/jsoup/jsoup/1.6.1/jsoup-1.6.1.jar
Downloading: http://repo.maven.apache.org/maven2/org/apache/httpcomponents/httpcore/4.1.2/httpcore-4.1.2.jar
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KB at 2350.3 KB/sec)
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[WARNING] 
[WARNING] Some problems were encountered while building the effective model for org.apache.ctakes:ctakes-assertion:jar:3.2.3-SNAPSHOT
[WARNING] 'dependencies.dependency.(groupId:artifactId:type:classifier)' must be unique: junit:junit:jar
-> duplicate declaration of version (?) @ line 146, column 15
[WARNING] 'dependencies.dependency.systemPath' for org.mitre.medfacts:medfacts-i2b2:jar should
not point at files within the project directory, ${project.basedir}/lib/med-facts-i2b2-1.2-SNAPSHOT.jar
will be unresolvable by dependent projects @ line 185, column 16
[WARNING] 'dependencies.dependency.systemPath' for org.mitre.medfacts:medfacts-zoner:jar should
not point at files within the project directory, ${project.basedir}/lib/med-facts-zoner-1.1.jar
will be unresolvable by dependent projects @ line 192, column 16
[WARNING] 'dependencies.dependency.systemPath' for org.mitre.jcarafe.core:jcarafe.core:jar
should not point at files within the project directory, ${project.basedir}/lib/jcarafe-core_2.9.1-0.9.8.3.RC4.jar
will be unresolvable by dependent projects @ line 199, column 16
[WARNING] 'dependencies.dependency.systemPath' for org.mitre.jcarafe.ext:jcarafe.ext:jar should
not point at files within the project directory, ${project.basedir}/lib/jcarafe-ext_2.9.1-0.9.8.3.RC4.jar
will be unresolvable by dependent projects @ line 206, column 16
[WARNING] 
[WARNING] Some problems were encountered while building the effective model for org.apache.ctakes:ctakes-distribution:pom:3.2.3-SNAPSHOT
[WARNING] 'dependencies.dependency.(groupId:artifactId:type:classifier)' must be unique: org.apache.ctakes:ctakes-ne-contexts:jar
-> duplicate declaration of version (?) @ line 103, column 15
[WARNING] 
[WARNING] It is highly recommended to fix these problems because they threaten the stability
of your build.
[WARNING] 
[WARNING] For this reason, future Maven versions might no longer support building such malformed
projects.
[WARNING] 
[ERROR] Could not find the selected project in the reactor: ctakes -> [Help 1]
[ERROR] 
[ERROR] To see the full stack trace of the errors, re-run Maven with the -e switch.
[ERROR] Re-run Maven using the -X switch to enable full debug logging.
[ERROR] 
[ERROR] For more information about the errors and possible solutions, please read the following
articles:
[ERROR] [Help 1] http://cwiki.apache.org/confluence/display/MAVEN/MavenExecutionException
channel stopped

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