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From Apache Jenkins Server <jenk...@builds.apache.org>
Subject Build failed in Jenkins: ctakes-trunk-compiletest #686
Date Thu, 25 Jun 2015 14:31:54 GMT
See <https://builds.apache.org/job/ctakes-trunk-compiletest/686/changes>

Changes:

[tmill] Model for markable salience.

[tmill] New method to list factory for appending elements.

[tmill] Add type for doing mention-cluster coreference.

[tmill] Change visibility of kernels array.

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 Category: CONTAINS
Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 18.443 sec
Running org.apache.ctakes.temporal.ae.EventAnnotatorTest
25 Jun 2015 14:30:39  INFO TokenizerAnnotatorPTB - Initializing org.apache.ctakes.core.ae.TokenizerAnnotatorPTB
25 Jun 2015 14:30:39  INFO POSTagger - POS tagger model file: org/apache/ctakes/postagger/models/mayo-pos.zip
25 Jun 2015 14:30:40  INFO ContextDependentTokenizerAnnotator - Finite state machines loaded.
25 Jun 2015 14:30:40  INFO SentenceDetector - Sentence detector model file: org/apache/ctakes/core/sentdetect/sd-med-model.zip
25 Jun 2015 14:30:40  INFO LvgCmdApiResourceImpl - Loading NLM Norm and Lvg with config file
= <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-lvg-res/target/classes/org/apache/ctakes/lvg/data/config/lvg.properties>
25 Jun 2015 14:30:40  INFO LvgCmdApiResourceImpl -   config file absolute path = <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-lvg-res/target/classes/org/apache/ctakes/lvg/data/config/lvg.properties>
25 Jun 2015 14:30:40  INFO LvgCmdApiResourceImpl - cwd = <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal>
25 Jun 2015 14:30:40  INFO LvgCmdApiResourceImpl - cd <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-lvg-res/target/classes/org/apache/ctakes/lvg/>
25 Jun 2015 14:30:40  INFO LvgCmdApiResourceImpl - cd <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal>
25 Jun 2015 14:30:40  INFO ClearNLPDependencyParserAE - using Morphy analysis? true
Loading configuration.
Loading feature templates.
Loading lexica.
Loading model:
........................................................................................
25 Jun 2015 14:30:53  INFO SentenceDetector - Starting processing.
25 Jun 2015 14:30:53  INFO TokenizerAnnotatorPTB - process(JCas) in org.apache.ctakes.core.ae.TokenizerAnnotatorPTB
25 Jun 2015 14:30:53  INFO LvgAnnotator - process(JCas)
25 Jun 2015 14:30:53  INFO ContextDependentTokenizerAnnotator - process(JCas)
25 Jun 2015 14:30:53  INFO POSTagger - process(JCas)
25 Jun 2015 14:30:53  INFO EventAnnotatorTest - Event: old
25 Jun 2015 14:30:53  INFO EventAnnotatorTest - Event: referred
25 Jun 2015 14:30:53  INFO EventAnnotatorTest - Event: diagnosed
25 Jun 2015 14:30:53  INFO EventAnnotatorTest - Event: cancer
25 Jun 2015 14:30:53  INFO EventAnnotatorTest - Event: blood
Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 15.696 sec
Running org.apache.ctakes.temporal.ae.ContextualModalityAnnotatorTest
25 Jun 2015 14:30:56  INFO TokenizerAnnotatorPTB - Initializing org.apache.ctakes.core.ae.TokenizerAnnotatorPTB
25 Jun 2015 14:30:56  INFO POSTagger - POS tagger model file: org/apache/ctakes/postagger/models/mayo-pos.zip
25 Jun 2015 14:30:56  INFO ContextDependentTokenizerAnnotator - Finite state machines loaded.
25 Jun 2015 14:30:56  INFO SentenceDetector - Sentence detector model file: org/apache/ctakes/core/sentdetect/sd-med-model.zip
25 Jun 2015 14:30:56  INFO LvgCmdApiResourceImpl - Loading NLM Norm and Lvg with config file
= <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-lvg-res/target/classes/org/apache/ctakes/lvg/data/config/lvg.properties>
25 Jun 2015 14:30:56  INFO LvgCmdApiResourceImpl -   config file absolute path = <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-lvg-res/target/classes/org/apache/ctakes/lvg/data/config/lvg.properties>
25 Jun 2015 14:30:56  INFO LvgCmdApiResourceImpl - cwd = <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal>
25 Jun 2015 14:30:56  INFO LvgCmdApiResourceImpl - cd <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-lvg-res/target/classes/org/apache/ctakes/lvg/>
25 Jun 2015 14:30:56  INFO LvgCmdApiResourceImpl - cd <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal>
25 Jun 2015 14:30:57  INFO ClearNLPDependencyParserAE - using Morphy analysis? true
Loading configuration.
Loading feature templates.
Loading lexica.
Loading model:
........................................................................................
25 Jun 2015 14:31:10  INFO SentenceDetector - Starting processing.
25 Jun 2015 14:31:10  INFO TokenizerAnnotatorPTB - process(JCas) in org.apache.ctakes.core.ae.TokenizerAnnotatorPTB
25 Jun 2015 14:31:10  INFO LvgAnnotator - process(JCas)
25 Jun 2015 14:31:10  INFO ContextDependentTokenizerAnnotator - process(JCas)
25 Jun 2015 14:31:10  INFO POSTagger - process(JCas)
25 Jun 2015 14:31:10  INFO ContextualModalityAnnotatorTest - Entity: oldContextualModality:ACTUAL
25 Jun 2015 14:31:10  INFO ContextualModalityAnnotatorTest - Entity: referredContextualModality:ACTUAL
25 Jun 2015 14:31:10  INFO ContextualModalityAnnotatorTest - Entity: diagnosedContextualModality:ACTUAL
25 Jun 2015 14:31:10  INFO ContextualModalityAnnotatorTest - Entity: cancerContextualModality:ACTUAL
25 Jun 2015 14:31:10  INFO ContextualModalityAnnotatorTest - Entity: bloodContextualModality:ACTUAL
Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 17.096 sec
Running org.apache.ctakes.temporal.ae.BackwardsTimeAnnotatorTest
25 Jun 2015 14:31:12  INFO TokenizerAnnotatorPTB - Initializing org.apache.ctakes.core.ae.TokenizerAnnotatorPTB
25 Jun 2015 14:31:12  INFO POSTagger - POS tagger model file: org/apache/ctakes/postagger/models/mayo-pos.zip
25 Jun 2015 14:31:12  INFO ContextDependentTokenizerAnnotator - Finite state machines loaded.
25 Jun 2015 14:31:12  INFO SentenceDetector - Sentence detector model file: org/apache/ctakes/core/sentdetect/sd-med-model.zip
25 Jun 2015 14:31:13  INFO LvgCmdApiResourceImpl - Loading NLM Norm and Lvg with config file
= <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-lvg-res/target/classes/org/apache/ctakes/lvg/data/config/lvg.properties>
25 Jun 2015 14:31:13  INFO LvgCmdApiResourceImpl -   config file absolute path = <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-lvg-res/target/classes/org/apache/ctakes/lvg/data/config/lvg.properties>
25 Jun 2015 14:31:13  INFO LvgCmdApiResourceImpl - cwd = <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal>
25 Jun 2015 14:31:13  INFO LvgCmdApiResourceImpl - cd <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-lvg-res/target/classes/org/apache/ctakes/lvg/>
25 Jun 2015 14:31:13  INFO LvgCmdApiResourceImpl - cd <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal>
25 Jun 2015 14:31:13  INFO ClearNLPDependencyParserAE - using Morphy analysis? true
Loading configuration.
Loading feature templates.
Loading lexica.
Loading model:
........................................................................................
25 Jun 2015 14:31:26  INFO SentenceDetector - Starting processing.
25 Jun 2015 14:31:26  INFO TokenizerAnnotatorPTB - process(JCas) in org.apache.ctakes.core.ae.TokenizerAnnotatorPTB
25 Jun 2015 14:31:26  INFO LvgAnnotator - process(JCas)
25 Jun 2015 14:31:26  INFO ContextDependentTokenizerAnnotator - process(JCas)
25 Jun 2015 14:31:26  INFO POSTagger - process(JCas)
25 Jun 2015 14:31:26  INFO BackwardsTimeAnnotatorTest - Event: recently
25 Jun 2015 14:31:26  INFO BackwardsTimeAnnotatorTest - Event: 6 months ago
Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 15.818 sec
Running org.apache.ctakes.temporal.ae.EventEventRelationAnnotatorTest
25 Jun 2015 14:31:28  INFO TokenizerAnnotatorPTB - Initializing org.apache.ctakes.core.ae.TokenizerAnnotatorPTB
25 Jun 2015 14:31:28  INFO POSTagger - POS tagger model file: org/apache/ctakes/postagger/models/mayo-pos.zip
25 Jun 2015 14:31:29  INFO ContextDependentTokenizerAnnotator - Finite state machines loaded.
25 Jun 2015 14:31:29  INFO SentenceDetector - Sentence detector model file: org/apache/ctakes/core/sentdetect/sd-med-model.zip
25 Jun 2015 14:31:29  INFO LvgCmdApiResourceImpl - Loading NLM Norm and Lvg with config file
= <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-lvg-res/target/classes/org/apache/ctakes/lvg/data/config/lvg.properties>
25 Jun 2015 14:31:29  INFO LvgCmdApiResourceImpl -   config file absolute path = <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-lvg-res/target/classes/org/apache/ctakes/lvg/data/config/lvg.properties>
25 Jun 2015 14:31:29  INFO LvgCmdApiResourceImpl - cwd = <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal>
25 Jun 2015 14:31:29  INFO LvgCmdApiResourceImpl - cd <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-lvg-res/target/classes/org/apache/ctakes/lvg/>
25 Jun 2015 14:31:29  INFO LvgCmdApiResourceImpl - cd <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal>
25 Jun 2015 14:31:29  INFO ClearNLPDependencyParserAE - using Morphy analysis? true
Loading configuration.
Loading feature templates.
Loading lexica.
Loading model:
........................................................................................
25 Jun 2015 14:31:43  INFO SentenceDetector - Starting processing.
25 Jun 2015 14:31:43  INFO TokenizerAnnotatorPTB - process(JCas) in org.apache.ctakes.core.ae.TokenizerAnnotatorPTB
25 Jun 2015 14:31:43  INFO LvgAnnotator - process(JCas)
25 Jun 2015 14:31:43  INFO ContextDependentTokenizerAnnotator - process(JCas)
25 Jun 2015 14:31:43  INFO POSTagger - process(JCas)
Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 17.313 sec

Results :

Tests run: 6, Failures: 0, Errors: 0, Skipped: 0

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[INFO]                                                                         
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[INFO] Building Apache cTAKES YTEX Web 3.2.3-SNAPSHOT
[INFO] ------------------------------------------------------------------------
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[INFO] Reactor Summary:
[INFO] 
[INFO] Apache cTAKES ..................................... SUCCESS [1.439s]
[INFO] Apache cTAKES common type system .................. SUCCESS [8.351s]
[INFO] Apache cTAKES utils ............................... SUCCESS [2.053s]
[INFO] Apache cTAKES Resources core ...................... SUCCESS [0.698s]
[INFO] Apache cTAKES core ................................ SUCCESS [9.943s]
[INFO] Apache cTAKES Resources pos-tagger ................ SUCCESS [0.707s]
[INFO] Apache cTAKES part-of-speech tagger ............... SUCCESS [3.228s]
[INFO] Apache cTAKES Resources ctakes-chunker-res ........ SUCCESS [0.709s]
[INFO] Apache cTAKES chunker ............................. SUCCESS [1.450s]
[INFO] Apache cTAKES document preprocessor ............... SUCCESS [1.834s]
[INFO] Apache cTAKES Resources dictionary-lookup ......... SUCCESS [10.166s]
[INFO] Apache cTAKES dictionary lookup ................... SUCCESS [2.582s]
[INFO] Apache cTAKES context dependent tokenizer ......... SUCCESS [1.272s]
[INFO] Apache cTAKES Resources lvg ....................... SUCCESS [42.295s]
[INFO] Apache cTAKES LVG lexical tools ................... SUCCESS [3.067s]
[INFO] Apache cTAKES Resources ne-contexts ............... SUCCESS [0.614s]
[INFO] Apache cTAKES named entity contexts ............... SUCCESS [2.433s]
[INFO] Apache cTAKES Resources constituency-parser ....... SUCCESS [0.851s]
[INFO] Apache cTAKES Constituency Parser ................. SUCCESS [1.455s]
[INFO] Apache cTAKES Resources coreference ............... SUCCESS [0.724s]
[INFO] Apache cTAKES Resources relation-extractor ........ SUCCESS [0.643s]
[INFO] Apache cTAKES Resources dependency-parser ......... SUCCESS [1.040s]
[INFO] Apache cTAKES Dependency Parser ................... SUCCESS [27.314s]
[INFO] Apache cTAKES Relation Extractor .................. SUCCESS [7.813s]
[INFO] Apache cTAKES CoReference Resolver ................ SUCCESS [4.980s]
[INFO] Apache cTAKES Resources drug-ner .................. SUCCESS [0.793s]
[INFO] Apache cTAKES Drug NER ............................ SUCCESS [4.988s]
[INFO] Apache cTAKES Resources side-effect ............... SUCCESS [0.817s]
[INFO] Apache cTAKES Side Effects ........................ SUCCESS [7.701s]
[INFO] Apache cTAKES Resources smoking-status ............ SUCCESS [0.842s]
[INFO] Apache cTAKES Smoking Status ...................... SUCCESS [6.311s]
[INFO] Apache cTAKES Resources assertion ................. SUCCESS [0.876s]
[INFO] Apache cTAKES Assertion ........................... SUCCESS [5.452s]
[INFO] Apache cTAKES Resources assertion-zoner ........... SUCCESS [0.789s]
[INFO] Apache cTAKES Assertion's zoner ................... SUCCESS [1.325s]
[INFO] Apache cTAKES Resources temporal .................. SUCCESS [0.652s]
[INFO] Apache cTAKES Resources ctakes-ytex-res ........... SUCCESS [0.645s]
[INFO] Apache cTAKES YTEX ................................ SUCCESS [6.792s]
[INFO] Apache cTAKES YTEX UIMA ........................... SUCCESS [7.766s]
[INFO] Apache cTAKES Resources dictionary-lookup-fast-res  SUCCESS [1.472s]
[INFO] Apache cTAKES dictionary lookup fast .............. SUCCESS [1.419s]
[INFO] Apache cTAKES ctakes-clinical-pipeline ............ SUCCESS [4.897s]
[INFO] Apache cTAKES Temporal Information Extraction ..... SUCCESS [1:58.994s]
[INFO] Apache cTAKES YTEX Web ............................ FAILURE [5.554s]
[INFO] Apache cTAKES Distribution ........................ SKIPPED
[INFO] Apache cTAKES Regression-test ..................... SKIPPED
[INFO] Apache cTAKES template filler ..................... SKIPPED
[INFO] ctakes-examples ................................... SKIPPED
[INFO] ------------------------------------------------------------------------
[INFO] BUILD FAILURE
[INFO] ------------------------------------------------------------------------
[INFO] Total time: 5:30.873s
[INFO] Finished at: Thu Jun 25 14:31:50 UTC 2015
[INFO] Final Memory: 87M/367M
[INFO] ------------------------------------------------------------------------
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[ERROR] Failed to execute goal on project ctakes-ytex-web: Could not resolve dependencies
for project org.apache.ctakes:ctakes-ytex-web:war:3.2.3-SNAPSHOT: Failed to collect dependencies
for [org.apache.ctakes:ctakes-ytex:jar:3.2.3-SNAPSHOT (compile), org.apache.ctakes:ctakes-ytex-res:jar:3.2.3-SNAPSHOT
(compile), org.springframework:spring-web:jar:3.1.2.RELEASE (compile), com.sun.faces:jsf-api:jar:2.1.3
(compile), com.sun.faces:jsf-impl:jar:2.1.3 (compile), org.icefaces:icefaces:jar:2.0.2 (compile),
org.icefaces:icefaces-ace:jar:2.0.2 (compile), org.icefaces:icefaces-compat:jar:2.0.2 (compile),
backport-util-concurrent:backport-util-concurrent:jar:3.1 (compile), net.sf.jsr107cache:jsr107cache:jar:1.0
(compile), org.apache.cxf:cxf-rt-frontend-jaxws:jar:2.7.8 (compile), org.apache.cxf:cxf-rt-frontend-jaxrs:jar:2.7.8
(compile), org.apache.cxf:cxf-rt-transports-http:jar:2.7.8 (compile), org.apache.cxf:cxf-rt-databinding-aegis:jar:2.7.8
(compile), javax.servlet.jsp:jsp-api:jar:2.2 (compile), javax.servlet:jstl:jar:1.2 (compile),
commons-el:commons-el:jar:1.0 (compile), org.glassfish.web:el-impl:jar:2.2 (compile), org.eclipse.jetty:jetty-server:jar:9.1.0.M0
(compile), org.eclipse.jetty:jetty-runner:jar:9.1.0.M0 (compile), org.eclipse.jetty:jetty-jsp:jar:9.1.0.M0
(compile)]: Failed to read artifact descriptor for org.glassfish:javax.el:jar:3.0.1-b07-SNAPSHOT:
Could not transfer artifact org.glassfish:javax.el:pom:3.0.1-b07-SNAPSHOT from/to jvnet-nexus-snapshots
(https://maven.java.net/content/repositories/snapshots): Error transferring file: Received
fatal alert: bad_record_mac from https://maven.java.net/content/repositories/snapshots/org/glassfish/javax.el/3.0.1-b07-SNAPSHOT/javax.el-3.0.1-b07-SNAPSHOT.pom
-> [Help 1]
[ERROR] 
[ERROR] To see the full stack trace of the errors, re-run Maven with the -e switch.
[ERROR] Re-run Maven using the -X switch to enable full debug logging.
[ERROR] 
[ERROR] For more information about the errors and possible solutions, please read the following
articles:
[ERROR] [Help 1] http://cwiki.apache.org/confluence/display/MAVEN/DependencyResolutionException
[ERROR] 
[ERROR] After correcting the problems, you can resume the build with the command
[ERROR]   mvn <goals> -rf :ctakes-ytex-web
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