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From "Pei Chen (JIRA)" <j...@apache.org>
Subject [jira] [Created] (CTAKES-308) org.apache.ctakes.ytex.umls.dao.UMLSDaoTest failure
Date Mon, 25 Aug 2014 19:04:59 GMT
Pei Chen created CTAKES-308:
-------------------------------

             Summary: org.apache.ctakes.ytex.umls.dao.UMLSDaoTest failure
                 Key: CTAKES-308
                 URL: https://issues.apache.org/jira/browse/CTAKES-308
             Project: cTAKES
          Issue Type: Bug
          Components: ctakes-ytex
            Reporter: Pei Chen
            Priority: Minor


2014-08-25 13:33:50,830 WARN  net.sf.ehcache.CacheManager  - Creating a new instance of CacheManager
using the diskStorePath "/var/folders/qc/d7xd4zzs0_xcybv88skt5_7m0000gn/T/" which is already
used by an existing CacheManager.

The source of the configuration was
net.sf.ehcache.config.generator.ConfigurationSource$InputStreamConfigurationSource@7433a719.

The diskStore path for this CacheManager will be set to /var/folders/qc/d7xd4zzs0_xcybv88skt5_7m0000gn/T//ehcache_auto_created_1408988030830.

To avoid this warning consider using the CacheManager factory methods to create a singleton
CacheManager or specifying a separate ehcache configuration (ehcache.xml) for each CacheManager
instance.

2014-08-25 13:33:51,082 WARN
org.hibernate.engine.jdbc.spi.SqlExceptionHelper  - SQL Error: 62,
SQLState: S0010

2014-08-25 13:33:51,082 ERROR
org.hibernate.engine.jdbc.spi.SqlExceptionHelper  - Unknown JDBC escape sequence: {{db.schema}.MRCONSO
mrconso0_ where mrconso0_.aui>?
and length(mrconso0_.aui)>0 and length(mrconso0_.str)<200 and mrconso0_.lat='ENG' order
by mrconso0_.aui

2014-08-25 13:33:51,085 WARN
org.apache.ctakes.ytex.umls.dao.UMLSDaoTest  - sql exception - mrconso probably doesn't exist,
check error

org.hibernate.exception.SQLGrammarException: could not prepare statement

at org.hibernate.exception.internal.SQLStateConversionDelegate.convert(SQLStateConversionDelegate.java:123)

at org.hibernate.exception.internal.StandardSQLExceptionConverter.convert(StandardSQLExceptionConverter.java:49)

at org.hibernate.engine.jdbc.spi.SqlExceptionHelper.convert(SqlExceptionHelper.java:125)

at org.hibernate.engine.jdbc.internal.StatementPreparerImpl$StatementPreparationTemplate.prepareStatement(StatementPreparerImpl.java:188)

at org.hibernate.engine.jdbc.internal.StatementPreparerImpl.prepareQueryStatement(StatementPreparerImpl.java:159)

at org.hibernate.loader.Loader.prepareQueryStatement(Loader.java:1859)

at org.hibernate.loader.Loader.executeQueryStatement(Loader.java:1836)

at org.hibernate.loader.Loader.executeQueryStatement(Loader.java:1816)

at org.hibernate.loader.Loader.doQuery(Loader.java:900)

at org.hibernate.loader.Loader.doQueryAndInitializeNonLazyCollections(Loader.java:342)

at org.hibernate.loader.Loader.doList(Loader.java:2526)

at org.hibernate.loader.Loader.doList(Loader.java:2512)

at org.hibernate.loader.Loader.listIgnoreQueryCache(Loader.java:2342)

at org.hibernate.loader.Loader.list(Loader.java:2337)

at org.hibernate.loader.hql.QueryLoader.list(QueryLoader.java:495)

at org.hibernate.hql.internal.ast.QueryTranslatorImpl.list(QueryTranslatorImpl.java:357)

at org.hibernate.engine.query.spi.HQLQueryPlan.performList(HQLQueryPlan.java:195)

at org.hibernate.internal.SessionImpl.list(SessionImpl.java:1269)

at org.hibernate.internal.QueryImpl.list(QueryImpl.java:101)

at org.apache.ctakes.ytex.umls.dao.UMLSDaoImpl.getAllAuiStr(UMLSDaoImpl.java:106)

at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)

at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57)

at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)

at java.lang.reflect.Method.invoke(Method.java:606)

at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:319)

at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:183)

at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:150)

at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:110)

at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172)

at org.springframework.aop.interceptor.ExposeInvocationInterceptor.invoke(ExposeInvocationInterceptor.java:90)

at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172)

at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:202)

at com.sun.proxy.$Proxy11.getAllAuiStr(Unknown Source)

at org.apache.ctakes.ytex.umls.dao.UMLSDaoTest.testGetAllAuiStr(UMLSDaoTest.java:53)

at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)

at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57)

at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)

at java.lang.reflect.Method.invoke(Method.java:606)

at org.junit.runners.model.FrameworkMethod$1.runReflectiveCall(FrameworkMethod.java:45)

at org.junit.internal.runners.model.ReflectiveCallable.run(ReflectiveCallable.java:15)

at org.junit.runners.model.FrameworkMethod.invokeExplosively(FrameworkMethod.java:42)

at org.junit.internal.runners.statements.InvokeMethod.evaluate(InvokeMethod.java:20)

at org.junit.internal.runners.statements.RunBefores.evaluate(RunBefores.java:28)

at org.junit.runners.ParentRunner.runLeaf(ParentRunner.java:263)

at org.junit.runners.BlockJUnit4ClassRunner.runChild(BlockJUnit4ClassRunner.java:68)

at org.junit.runners.BlockJUnit4ClassRunner.runChild(BlockJUnit4ClassRunner.java:47)

at org.junit.runners.ParentRunner$3.run(ParentRunner.java:231)

at org.junit.runners.ParentRunner$1.schedule(ParentRunner.java:60)

at org.junit.runners.ParentRunner.runChildren(ParentRunner.java:229)

at org.junit.runners.ParentRunner.access$000(ParentRunner.java:50)

at org.junit.runners.ParentRunner$2.evaluate(ParentRunner.java:222)

at org.junit.runners.ParentRunner.run(ParentRunner.java:300)

at org.apache.maven.surefire.junit4.JUnit4Provider.execute(JUnit4Provider.java:249)

at org.apache.maven.surefire.junit4.JUnit4Provider.executeTestSet(JUnit4Provider.java:142)

at org.apache.maven.surefire.junit4.JUnit4Provider.invoke(JUnit4Provider.java:113)

at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)

at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57)

at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)

at java.lang.reflect.Method.invoke(Method.java:606)

at org.apache.maven.surefire.util.ReflectionUtils.invokeMethodWithArray(ReflectionUtils.java:189)

at org.apache.maven.surefire.booter.ProviderFactory$ProviderProxy.invoke(ProviderFactory.java:165)

at org.apache.maven.surefire.booter.ProviderFactory.invokeProvider(ProviderFactory.java:85)

at org.apache.maven.surefire.booter.ForkedBooter.runSuitesInProcess(ForkedBooter.java:104)

at org.apache.maven.surefire.booter.ForkedBooter.main(ForkedBooter.java:75)

Caused by: java.sql.SQLException: Unknown JDBC escape sequence:
{{db.schema}.MRCONSO mrconso0_ where mrconso0_.aui>? and
length(mrconso0_.aui)>0 and length(mrconso0_.str)<200 and mrconso0_.lat='ENG' order
by mrconso0_.aui

at org.hsqldb.jdbc.jdbcConnection.onStartEscapeSequence(Unknown Source)

at org.hsqldb.jdbc.jdbcConnection.nativeSQL(Unknown Source)

at org.hsqldb.jdbc.jdbcPreparedStatement.<init>(Unknown Source)

at org.hsqldb.jdbc.jdbcConnection.prepareStatement(Unknown Source)

at org.apache.commons.dbcp.DelegatingConnection.prepareStatement(DelegatingConnection.java:281)

at org.apache.commons.dbcp.PoolingDataSource$PoolGuardConnectionWrapper.prepareStatement(PoolingDataSource.java:313)

at org.hibernate.engine.jdbc.internal.StatementPreparerImpl$5.doPrepare(StatementPreparerImpl.java:161)

at org.hibernate.engine.jdbc.internal.StatementPreparerImpl$StatementPreparationTemplate.prepareStatement(StatementPreparerImpl.java:182)

... 60 more

Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 3.202 sec


Results :


Tests in error:

  setSchema(org.apache.ctakes.jdl.data.xml.ValidationTest)




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