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From Apache Jenkins Server <jenk...@builds.apache.org>
Subject Build failed in Jenkins: ctakes-trunk-compiletest #515
Date Wed, 16 Jul 2014 14:07:37 GMT
See <https://builds.apache.org/job/ctakes-trunk-compiletest/515/changes>

Changes:

[tmill] Added markable to typesystem.

------------------------------------------
[...truncated 6815 lines...]
[INFO]                                                                         
[INFO] ------------------------------------------------------------------------
[INFO] Building Apache cTAKES ctakes-clinical-pipeline 3.2.1-SNAPSHOT
[INFO] ------------------------------------------------------------------------
[INFO] 
[INFO] --- maven-clean-plugin:2.4.1:clean (default-clean) @ ctakes-clinical-pipeline ---
[INFO] 
[INFO] --- maven-remote-resources-plugin:1.4:process (default) @ ctakes-clinical-pipeline
---
Downloading: http://repo.maven.apache.org/maven2/jwnl/jwnl/1.3.3/jwnl-1.3.3.pom
[INFO] 
[INFO] --- maven-resources-plugin:2.5:resources (default-resources) @ ctakes-clinical-pipeline
---
[debug] execute contextualize
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-clinical-pipeline/src/main/resources>
[INFO] Copying 3 resources
[INFO] 
[INFO] --- maven-compiler-plugin:2.4:compile (default-compile) @ ctakes-clinical-pipeline
---
[INFO] Compiling 5 source files to <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-clinical-pipeline/target/classes>
[WARNING] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-clinical-pipeline/src/main/java/org/apache/ctakes/clinicalpipeline/runtime/BagOfAnnotationsGenerator.java>:[92,55]
[unchecked] unchecked cast
[WARNING]   required: Class<T>
  found:    Type
  where T is a type-variable:
    T extends Annotation declared in class BagOfAnnotationsGenerator
<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-clinical-pipeline/src/main/java/org/apache/ctakes/clinicalpipeline/ae/ExtractionPrepAnnotator.java>:[167,17]
[unchecked] unchecked call to add(E) as a member of the raw type Set
[INFO] 
[INFO] --- maven-remote-resources-plugin:1.4:process (default) @ ctakes-clinical-pipeline
---
Downloading: http://repo.maven.apache.org/maven2/jwnl/jwnl/1.3.3/jwnl-1.3.3.pom
[INFO] 
[INFO] --- maven-resources-plugin:2.5:resources (default-resources) @ ctakes-clinical-pipeline
---
[debug] execute contextualize
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-clinical-pipeline/src/main/resources>
[INFO] Copying 3 resources
[INFO] Copying 3 resources
[INFO] 
[INFO] --- maven-compiler-plugin:2.4:compile (default-compile) @ ctakes-clinical-pipeline
---
[INFO] Nothing to compile - all classes are up to date
[INFO] 
[INFO] --- maven-resources-plugin:2.5:testResources (default-testResources) @ ctakes-clinical-pipeline
---
[debug] execute contextualize
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-clinical-pipeline/src/test/resources>
[INFO] Copying 3 resources
[INFO] Copying 3 resources
[INFO] 
[INFO] --- maven-compiler-plugin:2.4:testCompile (default-testCompile) @ ctakes-clinical-pipeline
---
[INFO] No sources to compile
[INFO] 
[INFO] --- maven-surefire-plugin:2.12.1:test (default-test) @ ctakes-clinical-pipeline ---
[INFO] Surefire report directory: <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-clinical-pipeline/target/surefire-reports>

-------------------------------------------------------
 T E S T S
-------------------------------------------------------

Results :

Tests run: 0, Failures: 0, Errors: 0, Skipped: 0

[JENKINS] Recording test results
[JENKINS] Archiving disabled
[INFO]                                                                         
[INFO] ------------------------------------------------------------------------
[INFO] Building Apache cTAKES Temporal Information Extraction 3.2.1-SNAPSHOT
[INFO] ------------------------------------------------------------------------
[INFO] 
[INFO] --- maven-clean-plugin:2.4.1:clean (default-clean) @ ctakes-temporal ---
[INFO] 
[INFO] --- maven-dependency-plugin:2.6:unpack (unpack) @ ctakes-temporal ---
[INFO] Configured Artifact: net.sourceforge.ctakesresources:ctakes-resources-umls2011ab:3.1.1:jar
[INFO] Unpacking /home/jenkins/jenkins-slave/maven-repositories/1/net/sourceforge/ctakesresources/ctakes-resources-umls2011ab/3.1.1/ctakes-resources-umls2011ab-3.1.1.jar
to <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/target/unpacked>
with includes "" and excludes ""
[INFO] 
[INFO] --- maven-remote-resources-plugin:1.4:process (default) @ ctakes-temporal ---
Downloading: http://repo.maven.apache.org/maven2/jwnl/jwnl/1.3.3/jwnl-1.3.3.pom
[INFO] 
[INFO] --- maven-resources-plugin:2.5:resources (default-resources) @ ctakes-temporal ---
[debug] execute contextualize
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] Copying 3 resources
[INFO] Copying 3 resources
[INFO] 
[INFO] --- maven-compiler-plugin:2.4:compile (default-compile) @ ctakes-temporal ---
[INFO] Compiling 134 source files to <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/target/classes>
[INFO] -------------------------------------------------------------
[ERROR] COMPILATION ERROR : 
[INFO] -------------------------------------------------------------
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/src/main/java/org/apache/ctakes/temporal/data/analysis/CoreferenceLinkDistanceAnalyzer.java>:[17,67]
error: package org.apache.ctakes.temporal.eval.EvaluationOfEventCoreference does not exist
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/src/main/java/org/apache/ctakes/temporal/eval/EvaluationOfEventTimeRelations.java>:[331,29]
[deprecation] createAnnotatorDescription(File) in EventTimeRelationAnnotator has been deprecated
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/src/main/java/org/apache/ctakes/temporal/eval/EvaluationOfEventEventRelations.java>:[139,35]
[deprecation] createAnnotatorDescription(File) in EventEventRelationAnnotator has been deprecated
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/src/main/java/org/apache/ctakes/temporal/eval/EvaluationOfTemporalRelations.java>:[351,29]
[deprecation] createAnnotatorDescription(File) in EventTimeRelationAnnotator has been deprecated
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/src/main/java/org/apache/ctakes/temporal/eval/EvaluationOfTemporalRelations.java>:[352,50]
[deprecation] createAnnotatorDescription(File) in EventEventRelationAnnotator has been deprecated
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/src/main/java/org/apache/ctakes/temporal/eval/EvaluationOfTemporalRelations.java>:[353,50]
[deprecation] createAnnotatorDescription(File) in EventDischargeTimeAnnotator has been deprecated
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/src/main/java/org/apache/ctakes/temporal/eval/EvaluationOfTemporalRelations.java>:[354,50]
[deprecation] createAnnotatorDescription(File) in EventAdmissionTimeAnnotator has been deprecated
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/src/main/java/org/apache/ctakes/temporal/data/analysis/CoreferenceLinkDistanceAnalyzer.java>:[71,74]
error: cannot find symbol
[ERROR]   symbol:   class ParagraphAnnotator
  location: class CoreferenceLinkDistanceAnalyzer
<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/src/main/java/org/apache/ctakes/temporal/eval/EvaluationOfEventProperties.java>:[180,42]
[deprecation] createAnnotatorDescription(File) in DocTimeRelAnnotator has been deprecated
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/src/main/java/org/apache/ctakes/temporal/eval/EvaluationOfEventProperties.java>:[181,50]
[deprecation] createAnnotatorDescription(File) in ContextualModalityAnnotator has been deprecated
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/src/main/java/org/apache/ctakes/temporal/ae/MetaTimeAnnotator.java>:[75,38]
[deprecation] createEnsembleDescription(File,String) in BackwardsTimeAnnotator has been deprecated
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/src/main/java/org/apache/ctakes/temporal/ae/MetaTimeAnnotator.java>:[78,46]
[deprecation] createEnsembleDescription(File,String) in ConstituencyBasedTimeAnnotator has
been deprecated
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/src/main/java/org/apache/ctakes/temporal/ae/MetaTimeAnnotator.java>:[81,32]
[deprecation] createEnsembleDescription(File,String) in CRFTimeAnnotator has been deprecated
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/src/main/java/org/apache/ctakes/temporal/ae/MetaTimeAnnotator.java>:[104,38]
[deprecation] createEnsembleDescription(File,String) in BackwardsTimeAnnotator has been deprecated
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/src/main/java/org/apache/ctakes/temporal/ae/MetaTimeAnnotator.java>:[107,46]
[deprecation] createEnsembleDescription(File,String) in ConstituencyBasedTimeAnnotator has
been deprecated
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/src/main/java/org/apache/ctakes/temporal/ae/MetaTimeAnnotator.java>:[110,32]
[deprecation] createEnsembleDescription(File,String) in CRFTimeAnnotator has been deprecated
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/src/main/java/org/apache/ctakes/temporal/eval/EvaluationOfTimeSpans.java>:[248,23]
[deprecation] createAnnotatorDescription(File) in TimeAnnotator has been deprecated
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/src/main/java/org/apache/ctakes/temporal/eval/EvaluationOfNEPredicateEventSpans.java>:[77,37]
[deprecation] createAnnotatorDescription(File) in NEPredicateEventAnnotator has been deprecated
[INFO] 18 errors 
[INFO] -------------------------------------------------------------
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[INFO] ------------------------------------------------------------------------
[INFO] Reactor Summary:
[INFO] 
[INFO] Apache cTAKES ..................................... SUCCESS [25.931s]
[INFO] Apache cTAKES common type system .................. SUCCESS [12.139s]
[INFO] Apache cTAKES utils ............................... SUCCESS [5.273s]
[INFO] Apache cTAKES Resources core ...................... SUCCESS [2.614s]
[INFO] Apache cTAKES core ................................ SUCCESS [17.175s]
[INFO] Apache cTAKES Resources pos-tagger ................ SUCCESS [2.348s]
[INFO] Apache cTAKES part-of-speech tagger ............... SUCCESS [5.617s]
[INFO] Apache cTAKES Resources ctakes-chunker-res ........ SUCCESS [2.591s]
[INFO] Apache cTAKES chunker ............................. SUCCESS [5.698s]
[INFO] Apache cTAKES document preprocessor ............... SUCCESS [5.125s]
[INFO] Apache cTAKES Resources dictionary-lookup ......... SUCCESS [11.587s]
[INFO] Apache cTAKES dictionary lookup ................... SUCCESS [5.381s]
[INFO] Apache cTAKES context dependent tokenizer ......... SUCCESS [3.129s]
[INFO] Apache cTAKES Resources lvg ....................... SUCCESS [1.003s]
[INFO] Apache cTAKES LVG lexical tools ................... SUCCESS [3.316s]
[INFO] Apache cTAKES Resources ne-contexts ............... SUCCESS [2.660s]
[INFO] Apache cTAKES named entity contexts ............... SUCCESS [6.335s]
[INFO] Apache cTAKES Resources constituency-parser ....... SUCCESS [2.809s]
[INFO] Apache cTAKES Constituency Parser ................. SUCCESS [4.723s]
[INFO] Apache cTAKES Resources coreference ............... SUCCESS [2.534s]
[INFO] Apache cTAKES Resources relation-extractor ........ SUCCESS [2.500s]
[INFO] Apache cTAKES Resources dependency-parser ......... SUCCESS [5.617s]
[INFO] Apache cTAKES Dependency Parser ................... SUCCESS [32.847s]
[INFO] Apache cTAKES Relation Extractor .................. SUCCESS [11.178s]
[INFO] Apache cTAKES CoReference Resolver ................ SUCCESS [5.356s]
[INFO] Apache cTAKES Resources drug-ner .................. SUCCESS [2.498s]
[INFO] Apache cTAKES Drug NER ............................ SUCCESS [6.043s]
[INFO] Apache cTAKES Resources side-effect ............... SUCCESS [2.708s]
[INFO] Apache cTAKES Side Effects ........................ SUCCESS [8.121s]
[INFO] Apache cTAKES Resources smoking-status ............ SUCCESS [2.584s]
[INFO] Apache cTAKES Smoking Status ...................... SUCCESS [8.538s]
[INFO] Apache cTAKES Resources assertion ................. SUCCESS [2.801s]
[INFO] Apache cTAKES Resources assertion-zoner ........... SUCCESS [2.948s]
[INFO] Apache cTAKES Assertion's zoner ................... SUCCESS [3.354s]
[INFO] Apache cTAKES Assertion ........................... SUCCESS [6.477s]
[INFO] Apache cTAKES Resources temporal .................. SUCCESS [2.606s]
[INFO] Apache cTAKES Resources ctakes-ytex-res ........... SUCCESS [2.992s]
[INFO] Apache cTAKES YTEX ................................ SUCCESS [8.884s]
[INFO] Apache cTAKES YTEX UIMA ........................... SUCCESS [8.782s]
[INFO] Apache cTAKES ctakes-clinical-pipeline ............ SUCCESS [5.778s]
[INFO] Apache cTAKES Temporal Information Extraction ..... FAILURE [12.637s]
[INFO] Apache cTAKES YTEX Web ............................ SKIPPED
[INFO] Apache cTAKES Distribution ........................ SKIPPED
[INFO] Apache cTAKES Regression-test ..................... SKIPPED
[INFO] Apache cTAKES template filler ..................... SKIPPED
[INFO] ctakes-examples ................................... SKIPPED
[INFO] Apache cTAKES Resources dictionary-lookup-fast-res  SKIPPED
[INFO] Apache cTAKES dictionary lookup fast .............. SKIPPED
[INFO] ------------------------------------------------------------------------
[INFO] BUILD FAILURE
[INFO] ------------------------------------------------------------------------
[INFO] Total time: 5:07.374s
[INFO] Finished at: Wed Jul 16 14:06:35 UTC 2014
[INFO] Final Memory: 80M/257M
[INFO] ------------------------------------------------------------------------
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[ERROR] Failed to execute goal org.apache.maven.plugins:maven-compiler-plugin:2.4:compile
(default-compile) on project ctakes-temporal: Compilation failure: Compilation failure:
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/src/main/java/org/apache/ctakes/temporal/data/analysis/CoreferenceLinkDistanceAnalyzer.java>:[17,67]
error: package org.apache.ctakes.temporal.eval.EvaluationOfEventCoreference does not exist
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/src/main/java/org/apache/ctakes/temporal/eval/EvaluationOfEventTimeRelations.java>:[331,29]
[deprecation] createAnnotatorDescription(File) in EventTimeRelationAnnotator has been deprecated
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/src/main/java/org/apache/ctakes/temporal/eval/EvaluationOfEventEventRelations.java>:[139,35]
[deprecation] createAnnotatorDescription(File) in EventEventRelationAnnotator has been deprecated
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/src/main/java/org/apache/ctakes/temporal/eval/EvaluationOfTemporalRelations.java>:[351,29]
[deprecation] createAnnotatorDescription(File) in EventTimeRelationAnnotator has been deprecated
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/src/main/java/org/apache/ctakes/temporal/eval/EvaluationOfTemporalRelations.java>:[352,50]
[deprecation] createAnnotatorDescription(File) in EventEventRelationAnnotator has been deprecated
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/src/main/java/org/apache/ctakes/temporal/eval/EvaluationOfTemporalRelations.java>:[353,50]
[deprecation] createAnnotatorDescription(File) in EventDischargeTimeAnnotator has been deprecated
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/src/main/java/org/apache/ctakes/temporal/eval/EvaluationOfTemporalRelations.java>:[354,50]
[deprecation] createAnnotatorDescription(File) in EventAdmissionTimeAnnotator has been deprecated
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/src/main/java/org/apache/ctakes/temporal/data/analysis/CoreferenceLinkDistanceAnalyzer.java>:[71,74]
error: cannot find symbol
[ERROR] symbol:   class ParagraphAnnotator
[ERROR] location: class CoreferenceLinkDistanceAnalyzer
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/src/main/java/org/apache/ctakes/temporal/eval/EvaluationOfEventProperties.java>:[180,42]
[deprecation] createAnnotatorDescription(File) in DocTimeRelAnnotator has been deprecated
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/src/main/java/org/apache/ctakes/temporal/eval/EvaluationOfEventProperties.java>:[181,50]
[deprecation] createAnnotatorDescription(File) in ContextualModalityAnnotator has been deprecated
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/src/main/java/org/apache/ctakes/temporal/ae/MetaTimeAnnotator.java>:[75,38]
[deprecation] createEnsembleDescription(File,String) in BackwardsTimeAnnotator has been deprecated
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/src/main/java/org/apache/ctakes/temporal/ae/MetaTimeAnnotator.java>:[78,46]
[deprecation] createEnsembleDescription(File,String) in ConstituencyBasedTimeAnnotator has
been deprecated
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/src/main/java/org/apache/ctakes/temporal/ae/MetaTimeAnnotator.java>:[81,32]
[deprecation] createEnsembleDescription(File,String) in CRFTimeAnnotator has been deprecated
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/src/main/java/org/apache/ctakes/temporal/ae/MetaTimeAnnotator.java>:[104,38]
[deprecation] createEnsembleDescription(File,String) in BackwardsTimeAnnotator has been deprecated
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/src/main/java/org/apache/ctakes/temporal/ae/MetaTimeAnnotator.java>:[107,46]
[deprecation] createEnsembleDescription(File,String) in ConstituencyBasedTimeAnnotator has
been deprecated
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/src/main/java/org/apache/ctakes/temporal/ae/MetaTimeAnnotator.java>:[110,32]
[deprecation] createEnsembleDescription(File,String) in CRFTimeAnnotator has been deprecated
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/src/main/java/org/apache/ctakes/temporal/eval/EvaluationOfTimeSpans.java>:[248,23]
[deprecation] createAnnotatorDescription(File) in TimeAnnotator has been deprecated
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/src/main/java/org/apache/ctakes/temporal/eval/EvaluationOfNEPredicateEventSpans.java>:[77,37]
[deprecation] createAnnotatorDescription(File) in NEPredicateEventAnnotator has been deprecated
[ERROR] -> [Help 1]
[ERROR] 
[ERROR] To see the full stack trace of the errors, re-run Maven with the -e switch.
[ERROR] Re-run Maven using the -X switch to enable full debug logging.
[ERROR] 
[ERROR] For more information about the errors and possible solutions, please read the following
articles:
[ERROR] [Help 1] http://cwiki.apache.org/confluence/display/MAVEN/MojoFailureException
[ERROR] 
[ERROR] After correcting the problems, you can resume the build with the command
[ERROR]   mvn <goals> -rf :ctakes-temporal
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