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From "Pei Chen (JIRA)" <j...@apache.org>
Subject [jira] [Updated] (CTAKES-263) OpenJDK6: Out of memory error on CVD default example
Date Tue, 03 Jun 2014 19:07:02 GMT

     [ https://issues.apache.org/jira/browse/CTAKES-263?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel
]

Pei Chen updated CTAKES-263:
----------------------------

    Fix Version/s: 3.2.0

> OpenJDK6: Out of memory error on CVD default example
> ----------------------------------------------------
>
>                 Key: CTAKES-263
>                 URL: https://issues.apache.org/jira/browse/CTAKES-263
>             Project: cTAKES
>          Issue Type: Bug
>    Affects Versions: 3.1.0
>         Environment: Physical Memory: 4GB
> UMLS logon: no, using defaults only 
> Java Memory: -Xms512M -Xmx1024M
> java version "1.6.0_27"
> OpenJDK Runtime Environment (IcedTea6 1.12.6) (6b27-1.12.6-1ubuntu0.13.04.2) OpenJDK
64-Bit Server VM (build 20.0-b12, mixed mode)
>            Reporter: Andy McMurry
>            Assignee: Andy McMurry
>            Priority: Minor
>              Labels: openjdk
>             Fix For: 3.2.0
>
>   Original Estimate: 24h
>  Remaining Estimate: 24h
>
> Steps to reproduce
> [Step #1]. 
> Follow instructions per User Guide 
> https://cwiki.apache.org/confluence/display/CTAKES/cTAKES+3.1+User+Install+Guide
> [Step #2]. Run default CVD 
> bin/runctakesCVD.sh
>  
> [Step #3]. Expected = AE loaded, actual = Memory error 
> Exception in thread "AWT-EventQueue-2" java.lang.OutOfMemoryError: Java heap space
> 	at scala.collection.mutable.BitSet.<init>(BitSet.scala:48)
> 	at org.mitre.jcarafe.crf.CoreModelSerializer$$anonfun$bitsetMap$2.apply(Model.scala:191)
> 	at org.mitre.jcarafe.crf.CoreModelSerializer$$anonfun$bitsetMap$2.apply(Model.scala:190)
> 	at sbinary.Generic$$anon$5.reads(generic.scala:71)
> 	at sbinary.Operations$.read(operations.scala:9)
> 	at sbinary.Generic$$anon$11.reads(generic.scala:170)
> 	at sbinary.Operations$.read(operations.scala:9)
> 	at sbinary.BasicTypes$$anon$4.reads(standardtypes.scala:29)
> 	at sbinary.BasicTypes$$anon$4.reads(standardtypes.scala:24)
> 	at sbinary.Operations$.read(operations.scala:9)
> 	at sbinary.Generic$CollectionFormat$$anonfun$reads$1.apply(generic.scala:23)
> 	at sbinary.Generic$CollectionFormat$$anonfun$reads$1.apply(generic.scala:23)
> 	at scala.collection.TraversableLike$$anonfun$map$1.apply(TraversableLike.scala:194)
> 	at scala.collection.TraversableLike$$anonfun$map$1.apply(TraversableLike.scala:194)
> 	at scala.collection.immutable.Range.foreach(Range.scala:75)
> 	at scala.collection.TraversableLike$class.map(TraversableLike.scala:194)
> 	at scala.collection.immutable.Range.map(Range.scala:43)
> 	at sbinary.Generic$CollectionFormat.reads(generic.scala:23)
> 	at sbinary.Operations$.read(operations.scala:9)
> 	at sbinary.Generic$$anon$5.reads(generic.scala:71)
> 	at sbinary.Operations$.read(operations.scala:9)
> 	at sbinary.BasicTypes$$anon$3.reads(standardtypes.scala:10)
> 	at sbinary.BasicTypes$$anon$3.reads(standardtypes.scala:8)
> 	at sbinary.Operations$.read(operations.scala:9)
> 	at sbinary.Generic$$anon$11.reads(generic.scala:167)
> 	at sbinary.Operations$.read(operations.scala:9)
> 	at sbinary.Generic$$anon$14.reads(generic.scala:259)
> 	at sbinary.Operations$.read(operations.scala:9)
> 	at sbinary.Operations$.fromFile(operations.scala:45)
> 	at org.mitre.jcarafe.crf.StandardSerializer$.readModel(Model.scala:329)
> 	at org.mitre.jcarafe.crf.StandardSerializer$.readModel(Model.scala:333)
> 	at org.mitre.jcarafe.scopetagger.FullDecoder$$anon$9.<init>(ScopeParser.scala:89)



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