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From "James Joseph Masanz (JIRA)" <j...@apache.org>
Subject [jira] [Commented] (CTAKES-279) ArrayIndexOutOfBoundsException: 7 generateFeatures(SingleDocumentProcessor.java:274)
Date Tue, 28 Jan 2014 20:30:41 GMT

    [ https://issues.apache.org/jira/browse/CTAKES-279?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanel&focusedCommentId=13884562#comment-13884562
] 

James Joseph Masanz commented on CTAKES-279:
--------------------------------------------

this was caused by a \r (carriage return) character appearing within the text (not immediately
prior to a \n)
this caused part of assertion to think there were 7 tokens on a line and part to think there
were fewer (stopping before the \r)



> ArrayIndexOutOfBoundsException: 7 generateFeatures(SingleDocumentProcessor.java:274)
> ------------------------------------------------------------------------------------
>
>                 Key: CTAKES-279
>                 URL: https://issues.apache.org/jira/browse/CTAKES-279
>             Project: cTAKES
>          Issue Type: Bug
>          Components: ctakes-assertion
>    Affects Versions: 3.1.1
>         Environment: using AggregatePlaintextUMLSProcessor within cTAKES 3.1.1
>            Reporter: James Joseph Masanz
>
> I can't post the data that caused this, but I've hit this exception 3 times. I will debug
and post more. Here's part of the stack trace. I am using AggregatePlaintextUMLSProcessor
within cTAKES 3.1.1
> Caused by: java.lang.ArrayIndexOutOfBoundsException: 7
>         at org.mitre.medfacts.i2b2.api.SingleDocumentProcessor.generateFeatures(SingleDocumentProcessor.java:274)
>         at org.mitre.medfacts.i2b2.api.SingleDocumentProcessor.processSingleDocument(SingleDocumentProcessor.java:102)
>         at org.apache.ctakes.assertion.medfacts.AssertionAnalysisEngine.process(AssertionAnalysisEngine.java:210)
>         at org.apache.uima.analysis_component.JCasAnnotator_ImplBase.process(JCasAnnotator_ImplBase.java:48)
>         at org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.callAnalysisComponentProcess(PrimitiveAnalysisEngine_impl.java:375)
>         ... 14 more



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