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From "Andy McMurry (JIRA)" <j...@apache.org>
Subject [jira] [Created] (CTAKES-263) OpenJDK6: Out of memory error on CVD default example
Date Tue, 12 Nov 2013 03:33:18 GMT
Andy McMurry created CTAKES-263:
-----------------------------------

             Summary: OpenJDK6: Out of memory error on CVD default example
                 Key: CTAKES-263
                 URL: https://issues.apache.org/jira/browse/CTAKES-263
             Project: cTAKES
          Issue Type: Bug
    Affects Versions: 3.1
         Environment: Physical Memory: 4GB
UMLS logon: no, using defaults only 
Java Memory: -Xms512M -Xmx1024M

java version "1.6.0_27"
OpenJDK Runtime Environment (IcedTea6 1.12.6) (6b27-1.12.6-1ubuntu0.13.04.2) OpenJDK 64-Bit
Server VM (build 20.0-b12, mixed mode)
            Reporter: Andy McMurry
            Priority: Minor


Steps to reproduce

[Step #1]. 
Follow instructions per User Guide 
https://cwiki.apache.org/confluence/display/CTAKES/cTAKES+3.1+User+Install+Guide

[Step #2]. Run default CVD 
bin/runctakesCVD.sh
 
[Step #3]. Expected = AE loaded, actual = Memory error 
Exception in thread "AWT-EventQueue-2" java.lang.OutOfMemoryError: Java heap space
	at scala.collection.mutable.BitSet.<init>(BitSet.scala:48)
	at org.mitre.jcarafe.crf.CoreModelSerializer$$anonfun$bitsetMap$2.apply(Model.scala:191)
	at org.mitre.jcarafe.crf.CoreModelSerializer$$anonfun$bitsetMap$2.apply(Model.scala:190)
	at sbinary.Generic$$anon$5.reads(generic.scala:71)
	at sbinary.Operations$.read(operations.scala:9)
	at sbinary.Generic$$anon$11.reads(generic.scala:170)
	at sbinary.Operations$.read(operations.scala:9)
	at sbinary.BasicTypes$$anon$4.reads(standardtypes.scala:29)
	at sbinary.BasicTypes$$anon$4.reads(standardtypes.scala:24)
	at sbinary.Operations$.read(operations.scala:9)
	at sbinary.Generic$CollectionFormat$$anonfun$reads$1.apply(generic.scala:23)
	at sbinary.Generic$CollectionFormat$$anonfun$reads$1.apply(generic.scala:23)
	at scala.collection.TraversableLike$$anonfun$map$1.apply(TraversableLike.scala:194)
	at scala.collection.TraversableLike$$anonfun$map$1.apply(TraversableLike.scala:194)
	at scala.collection.immutable.Range.foreach(Range.scala:75)
	at scala.collection.TraversableLike$class.map(TraversableLike.scala:194)
	at scala.collection.immutable.Range.map(Range.scala:43)
	at sbinary.Generic$CollectionFormat.reads(generic.scala:23)
	at sbinary.Operations$.read(operations.scala:9)
	at sbinary.Generic$$anon$5.reads(generic.scala:71)
	at sbinary.Operations$.read(operations.scala:9)
	at sbinary.BasicTypes$$anon$3.reads(standardtypes.scala:10)
	at sbinary.BasicTypes$$anon$3.reads(standardtypes.scala:8)
	at sbinary.Operations$.read(operations.scala:9)
	at sbinary.Generic$$anon$11.reads(generic.scala:167)
	at sbinary.Operations$.read(operations.scala:9)
	at sbinary.Generic$$anon$14.reads(generic.scala:259)
	at sbinary.Operations$.read(operations.scala:9)
	at sbinary.Operations$.fromFile(operations.scala:45)
	at org.mitre.jcarafe.crf.StandardSerializer$.readModel(Model.scala:329)
	at org.mitre.jcarafe.crf.StandardSerializer$.readModel(Model.scala:333)
	at org.mitre.jcarafe.scopetagger.FullDecoder$$anon$9.<init>(ScopeParser.scala:89)




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