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From "ASF subversion and git services (JIRA)" <j...@apache.org>
Subject [jira] [Commented] (CTAKES-156) java.io.FileNotFoundException: lookup/rxnorm_index when using DictionaryLookupAnnotator_sideEffectUMLS.xml
Date Tue, 27 Aug 2013 16:41:53 GMT

    [ https://issues.apache.org/jira/browse/CTAKES-156?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanel&focusedCommentId=13751417#comment-13751417
] 

ASF subversion and git services commented on CTAKES-156:
--------------------------------------------------------

Commit 1517871 from james-masanz@apache.org in branch 'ctakes/trunk'
[ https://svn.apache.org/r1517871 ]

CTAKES-156 - resources missing "org/apache/ctakes/dictionary/" at start of path
                
> java.io.FileNotFoundException: lookup/rxnorm_index  when using DictionaryLookupAnnotator_sideEffectUMLS.xml
> -----------------------------------------------------------------------------------------------------------
>
>                 Key: CTAKES-156
>                 URL: https://issues.apache.org/jira/browse/CTAKES-156
>             Project: cTAKES
>          Issue Type: Bug
>          Components: ctakes-side-effect
>    Affects Versions: 3.0-incubating, 3.1
>            Reporter: James Joseph Masanz
>             Fix For: 3.1
>
>
> Using RC7 of 3.0.0-incubating:
> 2/8/13 2:10:15 PM - 10: org.apache.uima.tools.cvd.MainFrame.handleException(527): SEVERE:
Exception occurred
> org.apache.uima.resource.ResourceInitializationException
> 	at org.apache.ctakes.core.resource.LuceneIndexReaderResourceImpl.load(LuceneIndexReaderResourceImpl.java:79)
> Caused by: java.io.FileNotFoundException: lookup/rxnorm_index
> 	at org.apache.ctakes.core.resource.FileLocator.locateExplicitly(FileLocator.java:69)
> 	at org.apache.ctakes.core.resource.FileLocator.locateFile(FileLocator.java:44)
> 	at org.apache.ctakes.core.resource.LuceneIndexReaderResourceImpl.load(LuceneIndexReaderResourceImpl.java:57)
> 	... 59 more
> DictionaryLookupAnnotator_sideEffectUMLS.xml contains this line
>                   <string>lookup/rxnorm_index</string>
> whereas  DictionaryLookupAnnotator_sideEffect.xml  contains this line
>                   <string>org/apache/ctakes/dictionary/lookup/drug_index</string>
> Personally I don't think this is severe enough to hold up the release of 3.0.0, but if
we have to create a new RC for some other reason, should consider adding it to the next RC

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