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From Apache Jenkins Server <jenk...@builds.apache.org>
Subject Build failed in Jenkins: ctakes-trunk-compiletest #338
Date Thu, 11 Jul 2013 20:46:34 GMT
See <https://builds.apache.org/job/ctakes-trunk-compiletest/338/changes>

Changes:

[tmill] Fixed a few regexps -- still don't show up in SHARP data training.

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[...truncated 5997 lines...]
-------------------------------------------------------
 T E S T S
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[INFO] --- maven-surefire-plugin:2.12:test (default-test) @ ctakes-temporal-res ---

Results :

Tests run: 0, Failures: 0, Errors: 0, Skipped: 0

[JENKINS] Recording test results
[INFO]                                                                         
[INFO] ------------------------------------------------------------------------
[INFO] Building Apache cTAKES Temporal Information Extraction 3.1.0-SNAPSHOT
[INFO] ------------------------------------------------------------------------
[INFO] [INFO] Deleting <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/target>

[INFO] --- maven-clean-plugin:2.4.1:clean (default-clean) @ ctakes-temporal ---
[INFO] [INFO] Configured Artifact: net.sourceforge.ctakesresources:ctakes-resources-umls2011ab:3.1.0:jar
[INFO] Unpacking /home/jenkins/jenkins-slave/maven-repositories/0/net/sourceforge/ctakesresources/ctakes-resources-umls2011ab/3.1.0/ctakes-resources-umls2011ab-3.1.0.jar
to <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/target/unpacked>
with includes "" and excludes ""

[INFO] --- maven-dependency-plugin:2.6:unpack (unpack) @ ctakes-temporal ---
[INFO] 
[INFO] --- maven-remote-resources-plugin:1.4:process (default) @ ctakes-temporal ---
Downloading: http://repo.maven.apache.org/maven2/jwnl/jwnl/1.3.3/jwnl-1.3.3.pom
[INFO] [debug] execute contextualize
[INFO] Using 'UTF-8' encoding to copy filtered resources.

[INFO] --- maven-resources-plugin:2.5:resources (default-resources) @ ctakes-temporal ---
[INFO] Copying 2 resources
[INFO] Copying 3 resources
[INFO] 
[INFO] --- maven-compiler-plugin:2.4:compile (default-compile) @ ctakes-temporal ---
[INFO] Compiling 71 source files to <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/target/classes>
[WARNING] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/src/main/java/org/apache/ctakes/temporal/eval/Evaluation_ImplBase.java>:[265,19]
[deprecation] locateFile(java.lang.String) in org.apache.ctakes.core.resource.FileLocator
has been deprecated
[WARNING] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/src/main/java/org/apache/ctakes/temporal/pipelines/EventAndTimeExtractionPipeline.java>:[157,19]
[deprecation] locateFile(java.lang.String) in org.apache.ctakes.core.resource.FileLocator
has been deprecated
[WARNING] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/src/main/java/org/apache/ctakes/temporal/pipelines/EventExtractionPipeline.java>:[150,19]
[deprecation] locateFile(java.lang.String) in org.apache.ctakes.core.resource.FileLocator
has been deprecated
[INFO] [INFO] Configured Artifact: net.sourceforge.ctakesresources:ctakes-resources-umls2011ab:3.1.0:jar
[INFO] ctakes-resources-umls2011ab-3.1.0.jar already unpacked.

[INFO] --- maven-dependency-plugin:2.6:unpack (unpack) @ ctakes-temporal ---
[INFO] 
[INFO] --- maven-remote-resources-plugin:1.4:process (default) @ ctakes-temporal ---
Downloading: http://repo.maven.apache.org/maven2/jwnl/jwnl/1.3.3/jwnl-1.3.3.pom
[debug] execute contextualize
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] Copying 2 resources
[INFO] Copying 3 resources
[INFO] Copying 3 resources
[INFO] 
[INFO] --- maven-resources-plugin:2.5:resources (default-resources) @ ctakes-temporal ---
[INFO] 
[INFO] --- maven-compiler-plugin:2.4:compile (default-compile) @ ctakes-temporal ---
[INFO] Nothing to compile - all classes are up to date
[debug] execute contextualize
[INFO] [INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/src/test/resources>
[INFO] Copying 3 resources
[INFO] Copying 3 resources

[INFO] --- maven-resources-plugin:2.5:testResources (default-testResources) @ ctakes-temporal
---
[INFO] [INFO] No sources to compile

[INFO] --- maven-compiler-plugin:2.4:testCompile (default-testCompile) @ ctakes-temporal ---
[INFO] [INFO] Surefire report directory: <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/target/surefire-reports>

-------------------------------------------------------
 T E S T S
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[INFO] --- maven-surefire-plugin:2.12:test (default-test) @ ctakes-temporal ---

Results :

Tests run: 0, Failures: 0, Errors: 0, Skipped: 0

[JENKINS] Recording test results
[INFO]                                                                         
[INFO] ------------------------------------------------------------------------
[INFO] Building Apache cTAKES ctakes-clinical-pipeline 3.1.0-SNAPSHOT
[INFO] ------------------------------------------------------------------------
[INFO] Deleting <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-clinical-pipeline/target>
[INFO] 
[INFO] --- maven-clean-plugin:2.4.1:clean (default-clean) @ ctakes-clinical-pipeline ---
[INFO] 
[INFO] --- maven-remote-resources-plugin:1.4:process (default) @ ctakes-clinical-pipeline
---
Downloading: http://repo.maven.apache.org/maven2/jwnl/jwnl/1.3.3/jwnl-1.3.3.pom
[debug] execute contextualize
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-clinical-pipeline/src/main/resources>
[INFO] [INFO] Copying 3 resources

[INFO] --- maven-resources-plugin:2.5:resources (default-resources) @ ctakes-clinical-pipeline
---
[INFO] 
[INFO] --- maven-compiler-plugin:2.4:compile (default-compile) @ ctakes-clinical-pipeline
---
[INFO] Compiling 4 source files to <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-clinical-pipeline/target/classes>
[INFO] -------------------------------------------------------------
[ERROR] COMPILATION ERROR : 
[INFO] -------------------------------------------------------------
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-clinical-pipeline/src/main/java/org/apache/ctakes/clinicalpipeline/runtime/BagOfAnnotationsGenerator.java>:[74,55]
[unchecked] unchecked cast
found   : java.lang.reflect.Type
required: java.lang.Class<T>
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-clinical-pipeline/src/main/java/org/apache/ctakes/clinicalpipeline/ae/ExtractionPrepAnnotator.java>:[167,17]
[unchecked] unchecked call to add(E) as a member of the raw type java.util.Set
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-clinical-pipeline/src/main/java/org/apache/ctakes/clinicalpipeline/ClinicalPipelineWithUmls.java>:[56,94]
cannot find symbol
symbol  : variable CORPUS_WO_GOLD_STD_TO_RUN_THROUGH_CTAKES
location: class org.apache.ctakes.assertion.util.AssertionConst
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-clinical-pipeline/src/main/java/org/apache/ctakes/clinicalpipeline/ClinicalPipelineWithUmls.java>:[58,64]
cannot find symbol
symbol  : variable CORPUS_WO_GOLD_STD_TO_RUN_THROUGH_CTAKES
location: class org.apache.ctakes.assertion.util.AssertionConst
[INFO] 4 errors 
[INFO] -------------------------------------------------------------
[INFO] ------------------------------------------------------------------------
[INFO] Reactor Summary:
[INFO] 
[INFO] Apache cTAKES ..................................... SUCCESS [31.836s]
[INFO] Apache cTAKES common type system .................. SUCCESS [22.162s]
[INFO] Apache cTAKES utils ............................... SUCCESS [5.550s]
[INFO] Apache cTAKES Resources core ...................... SUCCESS [3.981s]
[INFO] Apache cTAKES core ................................ SUCCESS [16.058s]
[INFO] Apache cTAKES Resources pos-tagger ................ SUCCESS [5.682s]
[INFO] Apache cTAKES part-of-speech tagger ............... SUCCESS [9.716s]
[INFO] Apache cTAKES Resources ctakes-chunker-res ........ SUCCESS [5.148s]
[INFO] Apache cTAKES chunker ............................. SUCCESS [5.848s]
[INFO] Apache cTAKES document preprocessor ............... SUCCESS [8.825s]
[INFO] Apache cTAKES Resources dictionary-lookup ......... SUCCESS [7.451s]
[INFO] Apache cTAKES dictionary lookup ................... SUCCESS [30.727s]
[INFO] Apache cTAKES context dependent tokenizer ......... SUCCESS [2.278s]
[INFO] Apache cTAKES Resources lvg ....................... SUCCESS [1.543s]
[INFO] Apache cTAKES LVG lexical tools ................... SUCCESS [2.444s]
[INFO] Apache cTAKES Resources ne-contexts ............... SUCCESS [1.327s]
[INFO] Apache cTAKES named entity contexts ............... SUCCESS [3.386s]
[INFO] Apache cTAKES Resources constituency-parser ....... SUCCESS [1.722s]
[INFO] Apache cTAKES Constituency Parser ................. SUCCESS [2.336s]
[INFO] Apache cTAKES Resources coreference ............... SUCCESS [6.395s]
[INFO] Apache cTAKES Resources relation-extractor ........ SUCCESS [3.698s]
[INFO] Apache cTAKES Resources dependency-parser ......... SUCCESS [24.837s]
[INFO] Apache cTAKES Dependency Parser ................... SUCCESS [41.126s]
[INFO] Apache cTAKES Relation Extractor .................. SUCCESS [11.599s]
[INFO] Apache cTAKES CoReference Resolver ................ SUCCESS [5.715s]
[INFO] Apache cTAKES Resources drug-ner .................. SUCCESS [1.962s]
[INFO] Apache cTAKES Drug NER ............................ SUCCESS [8.942s]
[INFO] Apache cTAKES Resources side-effect ............... SUCCESS [2.251s]
[INFO] Apache cTAKES Side Effects ........................ SUCCESS [8.096s]
[INFO] Apache cTAKES Resources smoking-status ............ SUCCESS [1.930s]
[INFO] Apache cTAKES Smoking Status ...................... SUCCESS [6.679s]
[INFO] Apache cTAKES Resources pad-term-spotter-res ...... SUCCESS [2.728s]
[INFO] Apache cTAKES Pad Term Spotter .................... SUCCESS [6.509s]
[INFO] Apache cTAKES Resources assertion ................. SUCCESS [4.211s]
[INFO] Apache cTAKES Resources assertion-zoner ........... SUCCESS [2.167s]
[INFO] Apache cTAKES Assertion's zoner ................... SUCCESS [2.708s]
[INFO] Apache cTAKES Assertion ........................... SUCCESS [5.212s]
[INFO] Apache cTAKES Resources temporal .................. SUCCESS [1.570s]
[INFO] Apache cTAKES Temporal Information Extraction ..... SUCCESS [27.398s]
[INFO] Apache cTAKES ctakes-clinical-pipeline ............ FAILURE [3.201s]
[INFO] Apache cTAKES Distribution ........................ SKIPPED
[INFO] Apache cTAKES Regression-test ..................... SKIPPED
[INFO] Apache cTAKES template filler ..................... SKIPPED
[INFO] ------------------------------------------------------------------------
[INFO] BUILD FAILURE
[INFO] ------------------------------------------------------------------------
[INFO] Total time: 5:57.887s
[INFO] Finished at: Thu Jul 11 20:46:20 UTC 2013
[INFO] Final Memory: 36M/165M
[INFO] ------------------------------------------------------------------------
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Waiting for Jenkins to finish collecting data
mavenExecutionResult exceptions not empty
message : Failed to execute goal org.apache.maven.plugins:maven-compiler-plugin:2.4:compile
(default-compile) on project ctakes-clinical-pipeline: Compilation failure
cause : Compilation failure
Stack trace : 
org.apache.maven.lifecycle.LifecycleExecutionException: Failed to execute goal org.apache.maven.plugins:maven-compiler-plugin:2.4:compile
(default-compile) on project ctakes-clinical-pipeline: Compilation failure
	at org.apache.maven.lifecycle.internal.MojoExecutor.execute(MojoExecutor.java:213)
	at org.apache.maven.lifecycle.internal.MojoExecutor.execute(MojoExecutor.java:153)
	at org.apache.maven.lifecycle.internal.MojoExecutor.execute(MojoExecutor.java:145)
	at org.apache.maven.lifecycle.internal.LifecycleModuleBuilder.buildProject(LifecycleModuleBuilder.java:84)
	at org.apache.maven.lifecycle.internal.LifecycleModuleBuilder.buildProject(LifecycleModuleBuilder.java:59)
	at org.apache.maven.lifecycle.internal.LifecycleStarter.singleThreadedBuild(LifecycleStarter.java:183)
	at org.apache.maven.lifecycle.internal.LifecycleStarter.execute(LifecycleStarter.java:161)
	at org.apache.maven.DefaultMaven.doExecute(DefaultMaven.java:320)
	at org.apache.maven.DefaultMaven.execute(DefaultMaven.java:156)
	at org.jvnet.hudson.maven3.launcher.Maven3Launcher.main(Maven3Launcher.java:79)
	at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
	at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39)
	at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
	at java.lang.reflect.Method.invoke(Method.java:597)
	at org.codehaus.plexus.classworlds.launcher.Launcher.launchStandard(Launcher.java:329)
	at org.codehaus.plexus.classworlds.launcher.Launcher.launch(Launcher.java:239)
	at org.jvnet.hudson.maven3.agent.Maven3Main.launch(Maven3Main.java:158)
	at hudson.maven.Maven3Builder.call(Maven3Builder.java:100)
	at hudson.maven.Maven3Builder.call(Maven3Builder.java:66)
	at hudson.remoting.UserRequest.perform(UserRequest.java:118)
	at hudson.remoting.UserRequest.perform(UserRequest.java:48)
	at hudson.remoting.Request$2.run(Request.java:326)
	at hudson.remoting.InterceptingExecutorService$1.call(InterceptingExecutorService.java:72)
	at java.util.concurrent.FutureTask$Sync.innerRun(FutureTask.java:303)
	at java.util.concurrent.FutureTask.run(FutureTask.java:138)
	at java.util.concurrent.ThreadPoolExecutor$Worker.runTask(ThreadPoolExecutor.java:895)
	at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:918)
	at java.lang.Thread.run(Thread.java:662)
Caused by: org.apache.maven.plugin.CompilationFailureException: Compilation failure
	at org.apache.maven.plugin.AbstractCompilerMojo.execute(AbstractCompilerMojo.java:678)
	at org.apache.maven.plugin.CompilerMojo.execute(CompilerMojo.java:128)
	at org.apache.maven.plugin.DefaultBuildPluginManager.executeMojo(DefaultBuildPluginManager.java:101)
	at org.apache.maven.lifecycle.internal.MojoExecutor.execute(MojoExecutor.java:209)
	... 27 more
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