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From Apache Jenkins Server <jenk...@builds.apache.org>
Subject Build failed in Jenkins: ctakes-trunk-compiletest #353
Date Fri, 19 Jul 2013 17:04:56 GMT
See <https://builds.apache.org/job/ctakes-trunk-compiletest/353/changes>

Changes:

[clin] Make a Yate's parameter for Chi2 feature selection. So people may turn on or off the
Yate's correction for Chi2 value calculation.
If Yate's correction is on (boolean Yates = true), small difference between observed value
and expected value (<0.5) will be ignored. More features will be trimmed.
Else, small difference will be kept. Users have the freedom to keep all features.

------------------------------------------
Started by an SCM change
Building remotely on ubuntu2 in workspace <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/>
Updating http://svn.apache.org/repos/asf/ctakes/trunk at revision '2013-07-19T17:02:30.717
+0000'
U         ctakes-clinical-pipeline/pom.xml
U         ctakes-temporal/src/main/java/org/apache/ctakes/temporal/ae/feature/selection/Chi2FeatureSelection.java
U         ctakes-assertion/pom.xml
U         pom.xml
At revision 1504942
Parsing POMs
ERROR: Failed to parse POMs
hudson.util.IOException2: remote file operation failed: <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/>
at hudson.remoting.Channel@32401cae:ubuntu2
	at hudson.FilePath.act(FilePath.java:861)
	at hudson.FilePath.act(FilePath.java:838)
	at hudson.maven.MavenModuleSetBuild$MavenModuleSetBuildExecution.parsePoms(MavenModuleSetBuild.java:862)
	at hudson.maven.MavenModuleSetBuild$MavenModuleSetBuildExecution.doRun(MavenModuleSetBuild.java:620)
	at hudson.model.AbstractBuild$AbstractBuildExecution.run(AbstractBuild.java:592)
	at hudson.model.Run.execute(Run.java:1568)
	at hudson.maven.MavenModuleSetBuild.run(MavenModuleSetBuild.java:477)
	at hudson.model.ResourceController.execute(ResourceController.java:88)
	at hudson.model.Executor.run(Executor.java:236)
Caused by: hudson.remoting.ProxyException: hudson.maven.MavenModuleSetBuild$MavenExecutionException:
org.apache.maven.project.ProjectBuildingException: Some problems were encountered while processing
the POMs:
[WARNING] 'dependencies.dependency.(groupId:artifactId:type:classifier)' must be unique: junit:junit:jar
-> duplicate declaration of version (?) @ line 154, column 15
[WARNING] 'dependencies.dependency.systemPath' for org.mitre.medfacts:medfacts-i2b2:jar should
not point at files within the project directory, ${project.basedir}/lib/med-facts-i2b2-1.2-SNAPSHOT.jar
will be unresolvable by dependent projects @ line 192, column 16
[WARNING] 'dependencies.dependency.systemPath' for org.mitre.medfacts:medfacts-zoner:jar should
not point at files within the project directory, ${project.basedir}/lib/med-facts-zoner-1.1.jar
will be unresolvable by dependent projects @ line 199, column 16
[WARNING] 'dependencies.dependency.systemPath' for org.mitre.jcarafe.core:jcarafe.core:jar
should not point at files within the project directory, ${project.basedir}/lib/jcarafe-core_2.9.1-0.9.8.3.RC4.jar
will be unresolvable by dependent projects @ line 206, column 16
[WARNING] 'dependencies.dependency.systemPath' for org.mitre.jcarafe.ext:jcarafe.ext:jar should
not point at files within the project directory, ${project.basedir}/lib/jcarafe-ext_2.9.1-0.9.8.3.RC4.jar
will be unresolvable by dependent projects @ line 213, column 16
[WARNING] 'dependencies.dependency.systemPath' for org.mitre.medfacts:medfacts-i2b2:jar refers
to a non-existing file <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-assertion/lib/med-facts-i2b2-1.2-SNAPSHOT.jar>
@ line 192, column 16
[WARNING] 'dependencies.dependency.systemPath' for org.mitre.medfacts:medfacts-zoner:jar refers
to a non-existing file <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-assertion/lib/med-facts-zoner-1.1.jar>
@ line 199, column 16
[WARNING] 'dependencies.dependency.systemPath' for org.mitre.jcarafe.core:jcarafe.core:jar
refers to a non-existing file <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-assertion/lib/jcarafe-core_2.9.1-0.9.8.3.RC4.jar>
@ line 206, column 16
[WARNING] 'dependencies.dependency.systemPath' for org.mitre.jcarafe.ext:jcarafe.ext:jar refers
to a non-existing file <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-assertion/lib/jcarafe-ext_2.9.1-0.9.8.3.RC4.jar>
@ line 213, column 16
[ERROR] 'dependencies.dependency.version' for net.sf.mastif:mastif-zoner:jar is missing. @
line 36, column 15
[WARNING] 'dependencies.dependency.(groupId:artifactId:type:classifier)' must be unique: org.jdom:jdom2:jar
-> duplicate declaration of version (?) @ line 91, column 17
[WARNING] 'dependencies.dependency.(groupId:artifactId:type:classifier)' must be unique: com.lexicalscope.jewelcli:jewelcli:jar
-> duplicate declaration of version (?) @ line 95, column 21
[WARNING] 'dependencies.dependency.(groupId:artifactId:type:classifier)' must be unique: org.apache.ctakes:ctakes-ne-contexts:jar
-> duplicate declaration of version (?) @ line 99, column 15

	at hudson.maven.MavenModuleSetBuild$PomParser.invoke(MavenModuleSetBuild.java:1229)
	at hudson.maven.MavenModuleSetBuild$PomParser.invoke(MavenModuleSetBuild.java:997)
	at hudson.FilePath$FileCallableWrapper.call(FilePath.java:2348)
	at hudson.remoting.UserRequest.perform(UserRequest.java:118)
	at hudson.remoting.UserRequest.perform(UserRequest.java:48)
	at hudson.remoting.Request$2.run(Request.java:326)
	at hudson.remoting.InterceptingExecutorService$1.call(InterceptingExecutorService.java:72)
	at java.util.concurrent.FutureTask$Sync.innerRun(FutureTask.java:334)
	at java.util.concurrent.FutureTask.run(FutureTask.java:166)
	at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1146)
	at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:615)
	at java.lang.Thread.run(Thread.java:679)
Caused by: hudson.remoting.ProxyException: org.apache.maven.project.ProjectBuildingException:
Some problems were encountered while processing the POMs:
[WARNING] 'dependencies.dependency.(groupId:artifactId:type:classifier)' must be unique: junit:junit:jar
-> duplicate declaration of version (?) @ line 154, column 15
[WARNING] 'dependencies.dependency.systemPath' for org.mitre.medfacts:medfacts-i2b2:jar should
not point at files within the project directory, ${project.basedir}/lib/med-facts-i2b2-1.2-SNAPSHOT.jar
will be unresolvable by dependent projects @ line 192, column 16
[WARNING] 'dependencies.dependency.systemPath' for org.mitre.medfacts:medfacts-zoner:jar should
not point at files within the project directory, ${project.basedir}/lib/med-facts-zoner-1.1.jar
will be unresolvable by dependent projects @ line 199, column 16
[WARNING] 'dependencies.dependency.systemPath' for org.mitre.jcarafe.core:jcarafe.core:jar
should not point at files within the project directory, ${project.basedir}/lib/jcarafe-core_2.9.1-0.9.8.3.RC4.jar
will be unresolvable by dependent projects @ line 206, column 16
[WARNING] 'dependencies.dependency.systemPath' for org.mitre.jcarafe.ext:jcarafe.ext:jar should
not point at files within the project directory, ${project.basedir}/lib/jcarafe-ext_2.9.1-0.9.8.3.RC4.jar
will be unresolvable by dependent projects @ line 213, column 16
[WARNING] 'dependencies.dependency.systemPath' for org.mitre.medfacts:medfacts-i2b2:jar refers
to a non-existing file <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-assertion/lib/med-facts-i2b2-1.2-SNAPSHOT.jar>
@ line 192, column 16
[WARNING] 'dependencies.dependency.systemPath' for org.mitre.medfacts:medfacts-zoner:jar refers
to a non-existing file <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-assertion/lib/med-facts-zoner-1.1.jar>
@ line 199, column 16
[WARNING] 'dependencies.dependency.systemPath' for org.mitre.jcarafe.core:jcarafe.core:jar
refers to a non-existing file <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-assertion/lib/jcarafe-core_2.9.1-0.9.8.3.RC4.jar>
@ line 206, column 16
[WARNING] 'dependencies.dependency.systemPath' for org.mitre.jcarafe.ext:jcarafe.ext:jar refers
to a non-existing file <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-assertion/lib/jcarafe-ext_2.9.1-0.9.8.3.RC4.jar>
@ line 213, column 16
[ERROR] 'dependencies.dependency.version' for net.sf.mastif:mastif-zoner:jar is missing. @
line 36, column 15
[WARNING] 'dependencies.dependency.(groupId:artifactId:type:classifier)' must be unique: org.jdom:jdom2:jar
-> duplicate declaration of version (?) @ line 91, column 17
[WARNING] 'dependencies.dependency.(groupId:artifactId:type:classifier)' must be unique: com.lexicalscope.jewelcli:jewelcli:jar
-> duplicate declaration of version (?) @ line 95, column 21
[WARNING] 'dependencies.dependency.(groupId:artifactId:type:classifier)' must be unique: org.apache.ctakes:ctakes-ne-contexts:jar
-> duplicate declaration of version (?) @ line 99, column 15

	at org.apache.maven.project.DefaultProjectBuilder.build(DefaultProjectBuilder.java:363)
	at hudson.maven.MavenEmbedder.buildProjects(MavenEmbedder.java:361)
	at hudson.maven.MavenEmbedder.readProjects(MavenEmbedder.java:331)
	at hudson.maven.MavenModuleSetBuild$PomParser.invoke(MavenModuleSetBuild.java:1179)
	... 11 more

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