Return-Path: X-Original-To: apmail-ctakes-notifications-archive@www.apache.org Delivered-To: apmail-ctakes-notifications-archive@www.apache.org Received: from mail.apache.org (hermes.apache.org [140.211.11.3]) by minotaur.apache.org (Postfix) with SMTP id 3437B108C6 for ; Fri, 14 Jun 2013 19:08:13 +0000 (UTC) Received: (qmail 8293 invoked by uid 500); 14 Jun 2013 19:08:13 -0000 Delivered-To: apmail-ctakes-notifications-archive@ctakes.apache.org Received: (qmail 8272 invoked by uid 500); 14 Jun 2013 19:08:13 -0000 Mailing-List: contact notifications-help@ctakes.apache.org; run by ezmlm Precedence: bulk List-Help: List-Unsubscribe: List-Post: List-Id: Reply-To: ctakes-dev@ctakes.apache.org Delivered-To: mailing list notifications@ctakes.apache.org Received: (qmail 8265 invoked by uid 500); 14 Jun 2013 19:08:13 -0000 Delivered-To: apmail-incubator-ctakes-notifications@incubator.apache.org Received: (qmail 8262 invoked by uid 99); 14 Jun 2013 19:08:13 -0000 Received: from athena.apache.org (HELO athena.apache.org) (140.211.11.136) by apache.org (qpsmtpd/0.29) with ESMTP; Fri, 14 Jun 2013 19:08:13 +0000 X-ASF-Spam-Status: No, hits=-2000.0 required=5.0 tests=ALL_TRUSTED X-Spam-Check-By: apache.org Received: from [140.211.11.8] (HELO aegis.apache.org) (140.211.11.8) by apache.org (qpsmtpd/0.29) with ESMTP; Fri, 14 Jun 2013 19:08:10 +0000 Received: from aegis.apache.org (localhost [127.0.0.1]) by aegis.apache.org (Postfix) with ESMTP id C0E25C0071; Fri, 14 Jun 2013 19:07:50 +0000 (UTC) Date: Fri, 14 Jun 2013 19:06:21 +0000 (UTC) From: Apache Jenkins Server To: ctakes-notifications@incubator.apache.org, peistation@gmail.com Message-ID: <182220515.514.1371236870787.JavaMail.hudson@aegis> Subject: Build failed in Jenkins: ctakes-trunk-compiletest #299 MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 7bit X-Jenkins-Job: ctakes-trunk-compiletest X-Jenkins-Result: FAILURE X-Virus-Checked: Checked by ClamAV on apache.org See Changes: [chenpei] CTAKES-209, CTAKES-210 - With the new SentenceDetector working with OpenNLP 1.5, we can simplify how models are loaded now. - Deleted the SuffixMaxentModelResourceImpl and related classes. It's just a string to the model file now. - Deleted duplicated SentenceDectector.xml descriptors that were scattered. - Added util in FileLocator.java to read in resources from InputStream instead of physical path File. Updated the SD to use this mechanism. ------------------------------------------ [...truncated 5674 lines...] [INFO] --- maven-surefire-plugin:2.12:test (default-test) @ ctakes-assertion-zoner-res --- Results : Tests run: 0, Failures: 0, Errors: 0, Skipped: 0 [JENKINS] Recording test results [INFO] [INFO] ------------------------------------------------------------------------ [INFO] Building Apache cTAKES Assertion's zoner 3.1.0-SNAPSHOT [INFO] ------------------------------------------------------------------------ [INFO] Deleting [INFO] [INFO] --- maven-clean-plugin:2.4.1:clean (default-clean) @ ctakes-assertion-zoner --- [INFO] [INFO] --- maven-remote-resources-plugin:1.3:process (default) @ ctakes-assertion-zoner --- [debug] execute contextualize [INFO] [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] --- maven-resources-plugin:2.5:resources (default-resources) @ ctakes-assertion-zoner --- [INFO] Copying 1 resource [INFO] Copying 3 resources [INFO] JCasGen: Output going to ' [INFO] [INFO] JCasGen: Reading the XML TAE descriptor, and creating types, for xml input file ' [INFO] JCasGen: Creating: 'org.apache.ctakes.assertion.zoner.types.Heading'. [INFO] JCasGen: Creating: 'org.apache.ctakes.assertion.zoner.types.Heading_Type'. [INFO] JCasGen: Creating: 'org.apache.ctakes.assertion.zoner.types.Subzone'. [INFO] JCasGen: Creating: 'org.apache.ctakes.assertion.zoner.types.Subzone_Type'. [INFO] JCasGen: Creating: 'org.apache.ctakes.assertion.zoner.types.Zone'. [INFO] JCasGen: Creating: 'org.apache.ctakes.assertion.zoner.types.Zone_Type'. [INFO] --- jcasgen-maven-plugin:0.9.3:generate (default) @ ctakes-assertion-zoner --- [INFO] [INFO] --- maven-compiler-plugin:2.4:compile (default-compile) @ ctakes-assertion-zoner --- [INFO] Compiling 8 source files to [INFO] [INFO] --- maven-remote-resources-plugin:1.3:process (default) @ ctakes-assertion-zoner --- [INFO] [debug] execute contextualize [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 1 resource [INFO] Copying 3 resources [INFO] Copying 3 resources [INFO] --- maven-resources-plugin:2.5:resources (default-resources) @ ctakes-assertion-zoner --- [INFO] [INFO] JCasGen: Output going to ' [INFO] JCasGen: Reading the XML TAE descriptor, and creating types, for xml input file ' [INFO] JCasGen: Replacing: 'org.apache.ctakes.assertion.zoner.types.Heading'. [INFO] JCasGen: Replacing: 'org.apache.ctakes.assertion.zoner.types.Heading_Type'. [INFO] JCasGen: Replacing: 'org.apache.ctakes.assertion.zoner.types.Subzone'. [INFO] JCasGen: Replacing: 'org.apache.ctakes.assertion.zoner.types.Subzone_Type'. [INFO] JCasGen: Replacing: 'org.apache.ctakes.assertion.zoner.types.Zone'. [INFO] JCasGen: Replacing: 'org.apache.ctakes.assertion.zoner.types.Zone_Type'. [INFO] --- jcasgen-maven-plugin:0.9.3:generate (default) @ ctakes-assertion-zoner --- [INFO] [INFO] Nothing to compile - all classes are up to date [INFO] --- maven-compiler-plugin:2.4:compile (default-compile) @ ctakes-assertion-zoner --- [debug] execute contextualize [INFO] [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] skip non existing resourceDirectory [INFO] Copying 3 resources [INFO] Copying 3 resources [INFO] --- maven-resources-plugin:2.5:testResources (default-testResources) @ ctakes-assertion-zoner --- [INFO] No sources to compile [INFO] [INFO] --- maven-compiler-plugin:2.4:testCompile (default-testCompile) @ ctakes-assertion-zoner --- [INFO] [INFO] Surefire report directory: ------------------------------------------------------- T E S T S ------------------------------------------------------- [INFO] --- maven-surefire-plugin:2.12:test (default-test) @ ctakes-assertion-zoner --- Results : Tests run: 0, Failures: 0, Errors: 0, Skipped: 0 [JENKINS] Recording test results [INFO] [INFO] ------------------------------------------------------------------------ [INFO] Building Apache cTAKES Assertion 3.1.0-SNAPSHOT [INFO] ------------------------------------------------------------------------ [INFO] [INFO] Deleting [INFO] --- maven-clean-plugin:2.4.1:clean (default-clean) @ ctakes-assertion --- [INFO] [INFO] --- maven-remote-resources-plugin:1.3:process (default) @ ctakes-assertion --- [debug] execute contextualize [INFO] [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] --- maven-resources-plugin:2.5:resources (default-resources) @ ctakes-assertion --- [INFO] Copying 1 resource [INFO] Copying 3 resources [INFO] [INFO] JCasGen: Output going to ' [INFO] JCasGen: Reading the XML TAE descriptor, and creating types, for xml input file ' [INFO] JCasGen: Creating: 'org.apache.ctakes.assertion.medfacts.types.Assertion'. [INFO] JCasGen: Creating: 'org.apache.ctakes.assertion.medfacts.types.Assertion_Type'. [INFO] JCasGen: Creating: 'org.apache.ctakes.assertion.medfacts.types.Concept'. [INFO] JCasGen: Creating: 'org.apache.ctakes.assertion.medfacts.types.Concept_Type'. [INFO] --- jcasgen-maven-plugin:0.9.3:generate (default) @ ctakes-assertion --- [INFO] [INFO] --- maven-compiler-plugin:2.4:compile (default-compile) @ ctakes-assertion --- [INFO] Compiling 62 source files to [WARNING] :[83,37] [deprecation] org.cleartk.classifier.opennlp.DefaultMaxentDataWriterFactory in org.cleartk.classifier.opennlp has been deprecated [WARNING] :[41,29] [deprecation] org.cleartk.classifier.CleartkAnnotatorDescriptionFactory in org.cleartk.classifier has been deprecated [WARNING] :[45,37] [deprecation] org.cleartk.classifier.opennlp.DefaultMaxentDataWriterFactory in org.cleartk.classifier.opennlp has been deprecated [WARNING] :[46,37] [deprecation] org.cleartk.classifier.opennlp.MaxentDataWriter in org.cleartk.classifier.opennlp has been deprecated [WARNING] :[31,47] [deprecation] org.cleartk.classifier.feature.extractor.ContextExtractor in org.cleartk.classifier.feature.extractor has been deprecated [WARNING] :[21,37] [deprecation] org.cleartk.classifier.opennlp.DefaultMaxentDataWriterFactory in org.cleartk.classifier.opennlp has been deprecated [WARNING] :[8,54] [deprecation] org.cleartk.classifier.feature.extractor.simple.SpannedTextExtractor in org.cleartk.classifier.feature.extractor.simple has been deprecated [WARNING] :[9,49] [deprecation] org.cleartk.classifier.feature.proliferate.CapitalTypeProliferator in org.cleartk.classifier.feature.proliferate has been deprecated [WARNING] :[10,49] [deprecation] org.cleartk.classifier.feature.proliferate.CharacterNGramProliferator in org.cleartk.classifier.feature.proliferate has been deprecated [WARNING] :[11,49] [deprecation] org.cleartk.classifier.feature.proliferate.LowerCaseProliferator in org.cleartk.classifier.feature.proliferate has been deprecated [WARNING] :[12,49] [deprecation] org.cleartk.classifier.feature.proliferate.NumericTypeProliferator in org.cleartk.classifier.feature.proliferate has been deprecated [WARNING] :[13,49] [deprecation] org.cleartk.classifier.feature.proliferate.ProliferatingExtractor in org.cleartk.classifier.feature.proliferate has been deprecated [WARNING] :[259,72] [deprecation] org.cleartk.classifier.opennlp.DefaultMaxentDataWriterFactory in org.cleartk.classifier.opennlp has been deprecated [WARNING] :[316,55] [unchecked] unchecked call to addAll(org.cleartk.eval.AnnotationStatistics) as a member of the raw type org.cleartk.eval.AnnotationStatistics [WARNING] :[747,24] [unchecked] unchecked call to add(java.util.Collection,java.util.Collection,com.google.common.base.Function,com.google.common.base.Function) as a member of the raw type org.cleartk.eval.AnnotationStatistics [WARNING] :[757,27] [unchecked] unchecked call to add(java.util.Collection,java.util.Collection,com.google.common.base.Function,com.google.common.base.Function) as a member of the raw type org.cleartk.eval.AnnotationStatistics [WARNING] :[767,27] [unchecked] unchecked call to add(java.util.Collection,java.util.Collection,com.google.common.base.Function,com.google.common.base.Function) as a member of the raw type org.cleartk.eval.AnnotationStatistics [WARNING] :[777,23] [unchecked] unchecked call to add(java.util.Collection,java.util.Collection,com.google.common.base.Function,com.google.common.base.Function) as a member of the raw type org.cleartk.eval.AnnotationStatistics [WARNING] :[787,23] [unchecked] unchecked call to add(java.util.Collection,java.util.Collection,com.google.common.base.Function,com.google.common.base.Function) as a member of the raw type org.cleartk.eval.AnnotationStatistics [WARNING] :[798,23] [unchecked] unchecked call to add(java.util.Collection,java.util.Collection,com.google.common.base.Function,com.google.common.base.Function) as a member of the raw type org.cleartk.eval.AnnotationStatistics [WARNING] :[291,72] [deprecation] org.cleartk.classifier.opennlp.DefaultMaxentDataWriterFactory in org.cleartk.classifier.opennlp has been deprecated [WARNING] :[38,30] [deprecation] locateFile(java.lang.String) in org.apache.ctakes.core.resource.FileLocator has been deprecated [WARNING] :[81,18] [unchecked] unchecked call to add(E) as a member of the raw type java.util.ArrayList [WARNING] :[42,25] [deprecation] locateFile(java.lang.String) in org.apache.ctakes.core.resource.FileLocator has been deprecated [WARNING] :[93,35] [unchecked] unchecked conversion found : java.util.List required: java.util.List [WARNING] :[57,41] [deprecation] locateFile(java.lang.String) in org.apache.ctakes.core.resource.FileLocator has been deprecated [WARNING] :[66,31] [deprecation] locateFile(java.lang.String) in org.apache.ctakes.core.resource.FileLocator has been deprecated [WARNING] :[33,90] [deprecation] org.cleartk.classifier.opennlp.DefaultMaxentDataWriterFactory in org.cleartk.classifier.opennlp has been deprecated [WARNING] :[74,21] [unchecked] unchecked cast found : org.apache.uima.jcas.tcas.Annotation required: T [WARNING] :[86,41] [deprecation] locateFile(java.lang.String) in org.apache.ctakes.core.resource.FileLocator has been deprecated [INFO] [INFO] --- maven-remote-resources-plugin:1.3:process (default) @ ctakes-assertion --- [debug] execute contextualize [INFO] [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 1 resource [INFO] Copying 3 resources [INFO] Copying 3 resources [INFO] --- maven-resources-plugin:2.5:resources (default-resources) @ ctakes-assertion --- [INFO] JCasGen: Output going to ' [INFO] [INFO] JCasGen: Reading the XML TAE descriptor, and creating types, for xml input file ' [INFO] JCasGen: Replacing: 'org.apache.ctakes.assertion.medfacts.types.Assertion'. [INFO] JCasGen: Replacing: 'org.apache.ctakes.assertion.medfacts.types.Assertion_Type'. [INFO] JCasGen: Replacing: 'org.apache.ctakes.assertion.medfacts.types.Concept'. [INFO] JCasGen: Replacing: 'org.apache.ctakes.assertion.medfacts.types.Concept_Type'. [INFO] --- jcasgen-maven-plugin:0.9.3:generate (default) @ ctakes-assertion --- [INFO] [INFO] Compiling 4 source files to [INFO] --- maven-compiler-plugin:2.4:compile (default-compile) @ ctakes-assertion --- [debug] execute contextualize [INFO] [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] skip non existing resourceDirectory [INFO] Copying 3 resources [INFO] Copying 3 resources [INFO] --- maven-resources-plugin:2.5:testResources (default-testResources) @ ctakes-assertion --- [INFO] [INFO] No sources to compile [INFO] --- maven-compiler-plugin:2.4:testCompile (default-testCompile) @ ctakes-assertion --- [INFO] [INFO] Surefire report directory: ------------------------------------------------------- T E S T S ------------------------------------------------------- [INFO] --- maven-surefire-plugin:2.12:test (default-test) @ ctakes-assertion --- Results : Tests run: 0, Failures: 0, Errors: 0, Skipped: 0 [JENKINS] Recording test results [INFO] [INFO] Deleting [INFO] ------------------------------------------------------------------------ [INFO] Building Apache cTAKES Resources temporal 3.1.0-SNAPSHOT [INFO] ------------------------------------------------------------------------ [INFO] [INFO] --- maven-clean-plugin:2.4.1:clean (default-clean) @ ctakes-temporal-res --- [INFO] [INFO] --- maven-remote-resources-plugin:1.3:process (default) @ ctakes-temporal-res --- [INFO] [debug] execute contextualize [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 1 resource [INFO] Copying 3 resources [INFO] --- maven-resources-plugin:2.5:resources (default-resources) @ ctakes-temporal-res --- [INFO] [INFO] No sources to compile [INFO] --- maven-compiler-plugin:2.4:compile (default-compile) @ ctakes-temporal-res --- [INFO] [INFO] --- maven-remote-resources-plugin:1.3:process (default) @ ctakes-temporal-res --- [debug] execute contextualize [INFO] [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 1 resource [INFO] Copying 3 resources [INFO] Copying 3 resources [INFO] --- maven-resources-plugin:2.5:resources (default-resources) @ ctakes-temporal-res --- [INFO] [INFO] No sources to compile [INFO] --- maven-compiler-plugin:2.4:compile (default-compile) @ ctakes-temporal-res --- [debug] execute contextualize [INFO] [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] skip non existing resourceDirectory [INFO] Copying 3 resources [INFO] Copying 3 resources [INFO] --- maven-resources-plugin:2.5:testResources (default-testResources) @ ctakes-temporal-res --- [INFO] [INFO] No sources to compile [INFO] --- maven-compiler-plugin:2.4:testCompile (default-testCompile) @ ctakes-temporal-res --- [INFO] [INFO] Surefire report directory: ------------------------------------------------------- T E S T S ------------------------------------------------------- [INFO] --- maven-surefire-plugin:2.12:test (default-test) @ ctakes-temporal-res --- Results : Tests run: 0, Failures: 0, Errors: 0, Skipped: 0 [JENKINS] Recording test results [INFO] [INFO] ------------------------------------------------------------------------ [INFO] Building Apache cTAKES Temporal Information Extraction 3.1.0-SNAPSHOT [INFO] ------------------------------------------------------------------------ [INFO] Deleting [INFO] [INFO] --- maven-clean-plugin:2.4.1:clean (default-clean) @ ctakes-temporal --- [INFO] Configured Artifact: net.sourceforge.ctakesresources:ctakes-resources-umls2011ab:3.1.0:jar [INFO] [INFO] Unpacking /home/jenkins/jenkins-slave/maven-repositories/1/net/sourceforge/ctakesresources/ctakes-resources-umls2011ab/3.1.0/ctakes-resources-umls2011ab-3.1.0.jar to with includes "" and excludes "" [INFO] --- maven-dependency-plugin:2.6:unpack (unpack) @ ctakes-temporal --- ERROR: Maven JVM terminated unexpectedly with exit code 143