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From Apache Jenkins Server <jenk...@builds.apache.org>
Subject Build failed in Jenkins: ctakes-trunk-compiletest » Apache cTAKES Regression-test #294
Date Thu, 13 Jun 2013 15:26:49 GMT
See <https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-regression-test/294/>

------------------------------------------
[...truncated 463 lines...]
13 Jun 2013 15:12:32  INFO TokenizerAnnotatorPTB - process(JCas) in org.apache.ctakes.core.ae.TokenizerAnnotatorPTB
13 Jun 2013 15:12:32  INFO LvgAnnotator - process(JCas)
13 Jun 2013 15:12:32  INFO ContextDependentTokenizerAnnotator - process(JCas)
13 Jun 2013 15:12:32  INFO POSTagger - process(JCas)
13 Jun 2013 15:12:32  INFO Chunker -  process(JCas)
13 Jun 2013 15:12:32  INFO CopyAnnotator - process(JCas)
13 Jun 2013 15:12:32  INFO OverlapAnnotator - process(JCas)
13 Jun 2013 15:12:32  INFO DictionaryLookupAnnotator - process(JCas)
13 Jun 2013 15:12:32  INFO MaxentParserWrapper - Started processing: sample_note_plaintext
   ....ended with 2 vectors.
13 Jun 2013 15:12:32  INFO MipacqSvmChainCreator - Classifying coreference in document: sample_note_plaintext
13 Jun 2013 15:12:33  INFO MipacqSvmChainCreator - Done classifying document: sample_note_plaintext
13 Jun 2013 15:12:33  INFO CasConsumer - Started
13 Jun 2013 15:12:33  INFO SentenceDetector - Starting processing.
13 Jun 2013 15:12:33  INFO TokenizerAnnotatorPTB - process(JCas) in org.apache.ctakes.core.ae.TokenizerAnnotatorPTB
13 Jun 2013 15:12:33  INFO LvgAnnotator - process(JCas)
13 Jun 2013 15:12:33  INFO ContextDependentTokenizerAnnotator - process(JCas)
13 Jun 2013 15:12:33  INFO POSTagger - process(JCas)
13 Jun 2013 15:12:33  INFO Chunker -  process(JCas)
13 Jun 2013 15:12:33  INFO CopyAnnotator - process(JCas)
13 Jun 2013 15:12:33  INFO OverlapAnnotator - process(JCas)
13 Jun 2013 15:12:33  INFO DictionaryLookupAnnotator - process(JCas)
13 Jun 2013 15:12:33  INFO MaxentParserWrapper - Started processing: testpatient_plaintext_1.txt
   ....ended with 4 vectors.
13 Jun 2013 15:12:33  INFO MipacqSvmChainCreator - Classifying coreference in document: testpatient_plaintext_1.txt
13 Jun 2013 15:12:33  INFO MipacqSvmChainCreator - Done classifying document: testpatient_plaintext_1.txt
13 Jun 2013 15:12:33  INFO CasConsumer - Started
13 Jun 2013 15:12:33  INFO SentenceDetector - Starting processing.
13 Jun 2013 15:12:33  INFO TokenizerAnnotatorPTB - process(JCas) in org.apache.ctakes.core.ae.TokenizerAnnotatorPTB
13 Jun 2013 15:12:33  INFO LvgAnnotator - process(JCas)
13 Jun 2013 15:12:33  INFO ContextDependentTokenizerAnnotator - process(JCas)
13 Jun 2013 15:12:33  INFO POSTagger - process(JCas)
13 Jun 2013 15:12:33  INFO Chunker -  process(JCas)
13 Jun 2013 15:12:33  INFO CopyAnnotator - process(JCas)
13 Jun 2013 15:12:33  INFO OverlapAnnotator - process(JCas)
13 Jun 2013 15:12:33  INFO DictionaryLookupAnnotator - process(JCas)
13 Jun 2013 15:12:33  INFO MaxentParserWrapper - Started processing: testpatient_plaintext_2.txt
   ....ended with 0 vectors.
13 Jun 2013 15:12:34  INFO MipacqSvmChainCreator - Classifying coreference in document: testpatient_plaintext_2.txt
13 Jun 2013 15:12:34  INFO MipacqSvmChainCreator - Done classifying document: testpatient_plaintext_2.txt
13 Jun 2013 15:12:34  INFO CasConsumer - Started
13 Jun 2013 15:12:34  INFO SentenceDetector - Starting processing.
13 Jun 2013 15:12:34  INFO TokenizerAnnotatorPTB - process(JCas) in org.apache.ctakes.core.ae.TokenizerAnnotatorPTB
13 Jun 2013 15:12:34  INFO LvgAnnotator - process(JCas)
13 Jun 2013 15:12:34  INFO ContextDependentTokenizerAnnotator - process(JCas)
13 Jun 2013 15:12:34  INFO POSTagger - process(JCas)
13 Jun 2013 15:12:34  INFO Chunker -  process(JCas)
13 Jun 2013 15:12:34  INFO CopyAnnotator - process(JCas)
13 Jun 2013 15:12:34  INFO OverlapAnnotator - process(JCas)
13 Jun 2013 15:12:34  INFO DictionaryLookupAnnotator - process(JCas)
13 Jun 2013 15:12:34  INFO MaxentParserWrapper - Started processing: doc2_07543210_sample_past_smoker.txt
   ....ended with 0 vectors.
13 Jun 2013 15:12:34  INFO MipacqSvmChainCreator - Classifying coreference in document: doc2_07543210_sample_past_smoker.txt
13 Jun 2013 15:12:34  INFO MipacqSvmChainCreator - Done classifying document: doc2_07543210_sample_past_smoker.txt
13 Jun 2013 15:12:34  INFO CasConsumer - Started
13 Jun 2013 15:12:34  INFO SentenceDetector - Starting processing.
13 Jun 2013 15:12:34  INFO TokenizerAnnotatorPTB - process(JCas) in org.apache.ctakes.core.ae.TokenizerAnnotatorPTB
13 Jun 2013 15:12:34  INFO LvgAnnotator - process(JCas)
13 Jun 2013 15:12:35  INFO ContextDependentTokenizerAnnotator - process(JCas)
13 Jun 2013 15:12:35  INFO POSTagger - process(JCas)
13 Jun 2013 15:12:35  INFO Chunker -  process(JCas)
13 Jun 2013 15:12:35  INFO CopyAnnotator - process(JCas)
13 Jun 2013 15:12:35  INFO OverlapAnnotator - process(JCas)
13 Jun 2013 15:12:35  INFO DictionaryLookupAnnotator - process(JCas)
13 Jun 2013 15:12:35  INFO MaxentParserWrapper - Started processing: testfakenote.txt
   ....ended with 5 vectors.
13 Jun 2013 15:12:35  INFO MipacqSvmChainCreator - Classifying coreference in document: testfakenote.txt
13 Jun 2013 15:12:36  INFO MipacqSvmChainCreator - Done classifying document: testfakenote.txt
13 Jun 2013 15:12:36  INFO CasConsumer - Started
13 Jun 2013 15:12:36  INFO SentenceDetector - Starting processing.
13 Jun 2013 15:12:36  INFO TokenizerAnnotatorPTB - process(JCas) in org.apache.ctakes.core.ae.TokenizerAnnotatorPTB
13 Jun 2013 15:12:36  INFO LvgAnnotator - process(JCas)
13 Jun 2013 15:12:36  INFO ContextDependentTokenizerAnnotator - process(JCas)
13 Jun 2013 15:12:36  INFO POSTagger - process(JCas)
13 Jun 2013 15:12:36  INFO Chunker -  process(JCas)
13 Jun 2013 15:12:36  INFO CopyAnnotator - process(JCas)
13 Jun 2013 15:12:36  INFO OverlapAnnotator - process(JCas)
13 Jun 2013 15:12:36  INFO DictionaryLookupAnnotator - process(JCas)
13 Jun 2013 15:12:36  INFO MaxentParserWrapper - Started processing: sample_note
   ....ended with 2 vectors.
13 Jun 2013 15:12:36  INFO MipacqSvmChainCreator - Classifying coreference in document: sample_note
13 Jun 2013 15:12:37  INFO MipacqSvmChainCreator - Done classifying document: sample_note
13 Jun 2013 15:12:37  INFO CasConsumer - Started
13 Jun 2013 15:12:37  INFO SentenceDetector - Starting processing.
13 Jun 2013 15:12:37  INFO TokenizerAnnotatorPTB - process(JCas) in org.apache.ctakes.core.ae.TokenizerAnnotatorPTB
13 Jun 2013 15:12:37  INFO LvgAnnotator - process(JCas)
13 Jun 2013 15:12:37  INFO ContextDependentTokenizerAnnotator - process(JCas)
13 Jun 2013 15:12:37  INFO POSTagger - process(JCas)
13 Jun 2013 15:12:37  INFO Chunker -  process(JCas)
13 Jun 2013 15:12:37  INFO CopyAnnotator - process(JCas)
13 Jun 2013 15:12:37  INFO OverlapAnnotator - process(JCas)
13 Jun 2013 15:12:37  INFO DictionaryLookupAnnotator - process(JCas)
13 Jun 2013 15:12:37  INFO MaxentParserWrapper - Started processing: doc1_07543210_sample_past_smoker.txt
   ....ended with 1 vectors.
13 Jun 2013 15:12:37  INFO MipacqSvmChainCreator - Classifying coreference in document: doc1_07543210_sample_past_smoker.txt
13 Jun 2013 15:12:38  INFO MipacqSvmChainCreator - Done classifying document: doc1_07543210_sample_past_smoker.txt
13 Jun 2013 15:12:38  INFO CasConsumer - Started
13 Jun 2013 15:12:38  INFO RegressionPipelineTest - Completed 12 documents
13 Jun 2013 15:12:38  INFO RegressionPipelineTest - Verifying Test Output: <https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-regression-test/ws/testdata/expectedoutput/CoreferenceCPETest/sample_note.xml>
13 Jun 2013 15:12:38  INFO RegressionPipelineTest - Verifying Test Output: <https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-regression-test/ws/testdata/expectedoutput/CoreferenceCPETest/doc2_07543210_sample_current.txt.xml>
13 Jun 2013 15:12:42  INFO RegressionPipelineTest - Verifying Test Output: <https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-regression-test/ws/testdata/expectedoutput/CoreferenceCPETest/testpatient_plaintext_2.txt.xml>
13 Jun 2013 15:12:42  INFO RegressionPipelineTest - Verifying Test Output: <https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-regression-test/ws/testdata/expectedoutput/CoreferenceCPETest/doc1_07543210_sample_current.txt.xml>
13 Jun 2013 15:12:42  INFO RegressionPipelineTest - Verifying Test Output: <https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-regression-test/ws/testdata/expectedoutput/CoreferenceCPETest/SampleInputRadiologyNotes.txt.xml>
13 Jun 2013 15:12:44  INFO RegressionPipelineTest - Verifying Test Output: <https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-regression-test/ws/testdata/expectedoutput/CoreferenceCPETest/doc1_07543210_sample_unknown.txt.xml>
13 Jun 2013 15:12:46  INFO RegressionPipelineTest - Verifying Test Output: <https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-regression-test/ws/testdata/expectedoutput/CoreferenceCPETest/doc2_07543210_sample_past_smoker.txt.xml>
13 Jun 2013 15:12:47  INFO RegressionPipelineTest - Verifying Test Output: <https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-regression-test/ws/testdata/expectedoutput/CoreferenceCPETest/text1.txt.xml>
13 Jun 2013 15:12:47  INFO RegressionPipelineTest - Verifying Test Output: <https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-regression-test/ws/testdata/expectedoutput/CoreferenceCPETest/doc1_07543210_sample_past_smoker.txt.xml>
13 Jun 2013 15:12:47  INFO RegressionPipelineTest - Verifying Test Output: <https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-regression-test/ws/testdata/expectedoutput/CoreferenceCPETest/sample_note_plaintext.xml>
13 Jun 2013 15:12:47  INFO RegressionPipelineTest - Verifying Test Output: <https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-regression-test/ws/testdata/expectedoutput/CoreferenceCPETest/testfakenote.txt.xml>
13 Jun 2013 15:12:47  INFO RegressionPipelineTest - Verifying Test Output: <https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-regression-test/ws/testdata/expectedoutput/CoreferenceCPETest/testpatient_plaintext_1.txt.xml>
Exception in thread "BaseCPMImpl-Thread" junit.framework.AssertionFailedError: Verifying Test
Output: testpatient_plaintext_1.txt.xmlorg.custommonkey.xmlunit.Diff
[not identical] Expected attribute value '150' but was '235' - comparing <org.apache.ctakes.typesystem.type.textsem.MeasurementAnnotation
begin="150"...> at /CAS[1]/org.apache.ctakes.typesystem.type.textsem.MeasurementAnnotation[1]/@begin
to <org.apache.ctakes.typesystem.type.textsem.MeasurementAnnotation begin="235"...>
at /CAS[1]/org.apache.ctakes.typesystem.type.textsem.MeasurementAnnotation[1]/@begin

[not identical] Expected attribute value '156' but was '240' - comparing <org.apache.ctakes.typesystem.type.textsem.MeasurementAnnotation
end="156"...> at /CAS[1]/org.apache.ctakes.typesystem.type.textsem.MeasurementAnnotation[1]/@end
to <org.apache.ctakes.typesystem.type.textsem.MeasurementAnnotation end="240"...> at
/CAS[1]/org.apache.ctakes.typesystem.type.textsem.MeasurementAnnotation[1]/@end

[not identical] Expected attribute value '2' but was '7' - comparing <org.apache.ctakes.typesystem.type.textsem.MeasurementAnnotation
id="2"...> at /CAS[1]/org.apache.ctakes.typesystem.type.textsem.MeasurementAnnotation[1]/@id
to <org.apache.ctakes.typesystem.type.textsem.MeasurementAnnotation id="7"...> at /CAS[1]/org.apache.ctakes.typesystem.type.textsem.MeasurementAnnotation[1]/@id

[not identical] Expected attribute value '248' but was '175' - comparing <org.apache.ctakes.typesystem.type.textsem.MeasurementAnnotation
begin="248"...> at /CAS[1]/org.apache.ctakes.typesystem.type.textsem.MeasurementAnnotation[2]/@begin
to <org.apache.ctakes.typesystem.type.textsem.MeasurementAnnotation begin="175"...>
at /CAS[1]/org.apache.ctakes.typesystem.type.textsem.MeasurementAnnotation[2]/@begin

[not identical] Expected attribute value '253' but was '180' - comparing <org.apache.ctakes.typesystem.type.textsem.MeasurementAnnotation
end="253"...> at /CAS[1]/org.apache.ctakes.typesystem.type.textsem.MeasurementAnnotation[2]/@end
to <org.apache.ctakes.typesystem.type.textsem.MeasurementAnnotation end="180"...> at
/CAS[1]/org.apache.ctakes.typesystem.type.textsem.MeasurementAnnotation[2]/@end

[not identical] Expected attribute value '8' but was '4' - comparing <org.apache.ctakes.typesystem.type.textsem.MeasurementAnnotation
id="8"...> at /CAS[1]/org.apache.ctakes.typesystem.type.textsem.MeasurementAnnotation[2]/@id
to <org.apache.ctakes.typesystem.type.textsem.MeasurementAnnotation id="4"...> at /CAS[1]/org.apache.ctakes.typesystem.type.textsem.MeasurementAnnotation[2]/@id

[not identical] Expected attribute value '235' but was '150' - comparing <org.apache.ctakes.typesystem.type.textsem.MeasurementAnnotation
begin="235"...> at /CAS[1]/org.apache.ctakes.typesystem.type.textsem.MeasurementAnnotation[3]/@begin
to <org.apache.ctakes.typesystem.type.textsem.MeasurementAnnotation begin="150"...>
at /CAS[1]/org.apache.ctakes.typesystem.type.textsem.MeasurementAnnotation[3]/@begin

[not identical] Expected attribute value '240' but was '156' - comparing <org.apache.ctakes.typesystem.type.textsem.MeasurementAnnotation
end="240"...> at /CAS[1]/org.apache.ctakes.typesystem.type.textsem.MeasurementAnnotation[3]/@end
to <org.apache.ctakes.typesystem.type.textsem.MeasurementAnnotation end="156"...> at
/CAS[1]/org.apache.ctakes.typesystem.type.textsem.MeasurementAnnotation[3]/@end

[not identical] Expected attribute value '7' but was '2' - comparing <org.apache.ctakes.typesystem.type.textsem.MeasurementAnnotation
id="7"...> at /CAS[1]/org.apache.ctakes.typesystem.type.textsem.MeasurementAnnotation[3]/@id
to <org.apache.ctakes.typesystem.type.textsem.MeasurementAnnotation id="2"...> at /CAS[1]/org.apache.ctakes.typesystem.type.textsem.MeasurementAnnotation[3]/@id

[not identical] Expected attribute value '175' but was '248' - comparing <org.apache.ctakes.typesystem.type.textsem.MeasurementAnnotation
begin="175"...> at /CAS[1]/org.apache.ctakes.typesystem.type.textsem.MeasurementAnnotation[4]/@begin
to <org.apache.ctakes.typesystem.type.textsem.MeasurementAnnotation begin="248"...>
at /CAS[1]/org.apache.ctakes.typesystem.type.textsem.MeasurementAnnotation[4]/@begin

[not identical] Expected attribute value '180' but was '253' - comparing <org.apache.ctakes.typesystem.type.textsem.MeasurementAnnotation
end="180"...> at /CAS[1]/org.apache.ctakes.typesystem.type.textsem.MeasurementAnnotation[4]/@end
to <org.apache.ctakes.typesystem.type.textsem.MeasurementAnnotation end="253"...> at
/CAS[1]/org.apache.ctakes.typesystem.type.textsem.MeasurementAnnotation[4]/@end

[not identical] Expected attribute value '4' but was '8' - comparing <org.apache.ctakes.typesystem.type.textsem.MeasurementAnnotation
id="4"...> at /CAS[1]/org.apache.ctakes.typesystem.type.textsem.MeasurementAnnotation[4]/@id
to <org.apache.ctakes.typesystem.type.textsem.MeasurementAnnotation id="8"...> at /CAS[1]/org.apache.ctakes.typesystem.type.textsem.MeasurementAnnotation[4]/@id

[not identical] Expected attribute value '12458' but was '12493' - comparing <org.apache.ctakes.typesystem.type.textsem.DiseaseDisorderMention
_id="12458"...> at /CAS[1]/org.apache.ctakes.typesystem.type.textsem.DiseaseDisorderMention[1]/@_id
to <org.apache.ctakes.typesystem.type.textsem.DiseaseDisorderMention _id="12493"...>
at /CAS[1]/org.apache.ctakes.typesystem.type.textsem.DiseaseDisorderMention[1]/@_id

[not identical] Expected attribute value '12454' but was '12489' - comparing <org.apache.ctakes.typesystem.type.textsem.DiseaseDisorderMention
_ref_ontologyConceptArr="12454"...> at /CAS[1]/org.apache.ctakes.typesystem.type.textsem.DiseaseDisorderMention[1]/@_ref_ontologyConceptArr
to <org.apache.ctakes.typesystem.type.textsem.DiseaseDisorderMention _ref_ontologyConceptArr="12489"...>
at /CAS[1]/org.apache.ctakes.typesystem.type.textsem.DiseaseDisorderMention[1]/@_ref_ontologyConceptArr

[not identical] Expected sequence of child nodes '3865' but was '3867' - comparing <org.apache.ctakes.typesystem.type.textsem.DiseaseDisorderMention...>
at /CAS[1]/org.apache.ctakes.typesystem.type.textsem.DiseaseDisorderMention[1] to <org.apache.ctakes.typesystem.type.textsem.DiseaseDisorderMention...>
at /CAS[1]/org.apache.ctakes.typesystem.type.textsem.DiseaseDisorderMention[1]

[not identical] Expected attribute value '12498' but was '12533' - comparing <org.apache.ctakes.typesystem.type.textsem.ProcedureMention
_id="12498"...> at /CAS[1]/org.apache.ctakes.typesystem.type.textsem.ProcedureMention[1]/@_id
to <org.apache.ctakes.typesystem.type.textsem.ProcedureMention _id="12533"...> at /CAS[1]/org.apache.ctakes.typesystem.type.textsem.ProcedureMention[1]/@_id

[not identical] Expected attribute value '12495' but was '12530' - comparing <org.apache.ctakes.typesystem.type.textsem.ProcedureMention
_ref_ontologyConceptArr="12495"...> at /CAS[1]/org.apache.ctakes.typesystem.type.textsem.ProcedureMention[1]/@_ref_ontologyConceptArr
to <org.apache.ctakes.typesystem.type.textsem.ProcedureMention _ref_ontologyConceptArr="12530"...>
at /CAS[1]/org.apache.ctakes.typesystem.type.textsem.ProcedureMention[1]/@_ref_ontologyConceptArr

[not identical] Expected sequence of child nodes '3867' but was '3869' - comparing <org.apache.ctakes.typesystem.type.textsem.ProcedureMention...>
at /CAS[1]/org.apache.ctakes.typesystem.type.textsem.ProcedureMention[1] to <org.apache.ctakes.typesystem.type.textsem.ProcedureMention...>
at /CAS[1]/org.apache.ctakes.typesystem.type.textsem.ProcedureMention[1]

[not identical] Expected attribute value '12535' but was '12570' - comparing <org.apache.ctakes.typesystem.type.textsem.SignSymptomMention
_id="12535"...> at /CAS[1]/org.apache.ctakes.typesystem.type.textsem.SignSymptomMention[1]/@_id
to <org.apache.ctakes.typesystem.type.textsem.SignSymptomMention _id="12570"...> at
/CAS[1]/org.apache.ctakes.typesystem.type.textsem.SignSymptomMention[1]/@_id

[not identical] Expected attribute value '12532' but was '12567' - comparing <org.apache.ctakes.typesystem.type.textsem.SignSymptomMention
_ref_ontologyConceptArr="12532"...> at /CAS[1]/org.apache.ctakes.typesystem.type.textsem.SignSymptomMention[1]/@_ref_ontologyConceptArr
to <org.apache.ctakes.typesystem.type.textsem.SignSymptomMention _ref_ontologyConceptArr="12567"...>
at /CAS[1]/org.apache.ctakes.typesystem.type.textsem.SignSymptomMention[1]/@_ref_ontologyConceptArr

[not identical] Expected sequence of child nodes '3869' but was '3871' - comparing <org.apache.ctakes.typesystem.type.textsem.SignSymptomMention...>
at /CAS[1]/org.apache.ctakes.typesystem.type.textsem.SignSymptomMention[1] to <org.apache.ctakes.typesystem.type.textsem.SignSymptomMention...>
at /CAS[1]/org.apache.ctakes.typesystem.type.textsem.SignSymptomMention[1]

[not identical] Expected attribute value '12574' but was '12609' - comparing <org.apache.ctakes.typesystem.type.textsem.AnatomicalSiteMention
_id="12574"...> at /CAS[1]/org.apache.ctakes.typesystem.type.textsem.AnatomicalSiteMention[1]/@_id
to <org.apache.ctakes.typesystem.type.textsem.AnatomicalSiteMention _id="12609"...>
at /CAS[1]/org.apache.ctakes.typesystem.type.textsem.AnatomicalSiteMention[1]/@_id

[not identical] Expected attribute value '12571' but was '12606' - comparing <org.apache.ctakes.typesystem.type.textsem.AnatomicalSiteMention
_ref_ontologyConceptArr="12571"...> at /CAS[1]/org.apache.ctakes.typesystem.type.textsem.AnatomicalSiteMention[1]/@_ref_ontologyConceptArr
to <org.apache.ctakes.typesystem.type.textsem.AnatomicalSiteMention _ref_ontologyConceptArr="12606"...>
at /CAS[1]/org.apache.ctakes.typesystem.type.textsem.AnatomicalSiteMention[1]/@_ref_ontologyConceptArr

[not identical] Expected sequence of child nodes '3871' but was '3873' - comparing <org.apache.ctakes.typesystem.type.textsem.AnatomicalSiteMention...>
at /CAS[1]/org.apache.ctakes.typesystem.type.textsem.AnatomicalSiteMention[1] to <org.apache.ctakes.typesystem.type.textsem.AnatomicalSiteMention...>
at /CAS[1]/org.apache.ctakes.typesystem.type.textsem.AnatomicalSiteMention[1]

[not identical] Expected attribute value '12602' but was '12448' - comparing <org.apache.ctakes.typesystem.type.textsem.MedicationEventMention
_id="12602"...> at /CAS[1]/org.apache.ctakes.typesystem.type.textsem.MedicationEventMention[1]/@_id
to <org.apache.ctakes.typesystem.type.textsem.MedicationEventMention _id="12448"...>
at /CAS[1]/org.apache.ctakes.typesystem.type.textsem.MedicationEventMention[1]/@_id

[not identical] Expected attribute value '12594' but was '12440' - comparing <org.apache.ctakes.typesystem.type.textsem.MedicationEventMention
_ref_ontologyConceptArr="12594"...> at /CAS[1]/org.apache.ctakes.typesystem.type.textsem.MedicationEventMention[1]/@_ref_ontologyConceptArr
to <org.apache.ctakes.typesystem.type.textsem.MedicationEventMention _ref_ontologyConceptArr="12440"...>
at /CAS[1]/org.apache.ctakes.typesystem.type.textsem.MedicationEventMention[1]/@_ref_ontologyConceptArr

[not identical] Expected sequence of child nodes '3873' but was '3865' - comparing <org.apache.ctakes.typesystem.type.textsem.MedicationEventMention...>
at /CAS[1]/org.apache.ctakes.typesystem.type.textsem.MedicationEventMention[1] to <org.apache.ctakes.typesystem.type.textsem.MedicationEventMention...>
at /CAS[1]/org.apache.ctakes.typesystem.type.textsem.MedicationEventMention[1]

[not identical] Expected attribute value '12458' but was '12493' - comparing <org.apache.ctakes.coreference.type.NEMarkable
_ref_content="12458"...> at /CAS[1]/org.apache.ctakes.coreference.type.NEMarkable[1]/@_ref_content
to <org.apache.ctakes.coreference.type.NEMarkable _ref_content="12493"...> at /CAS[1]/org.apache.ctakes.coreference.type.NEMarkable[1]/@_ref_content

[not identical] Expected attribute value '47' but was '37' - comparing <org.apache.ctakes.coreference.type.NEMarkable
id="47"...> at /CAS[1]/org.apache.ctakes.coreference.type.NEMarkable[1]/@id to <org.apache.ctakes.coreference.type.NEMarkable
id="37"...> at /CAS[1]/org.apache.ctakes.coreference.type.NEMarkable[1]/@id

[not identical] Expected attribute value '12498' but was '12533' - comparing <org.apache.ctakes.coreference.type.NEMarkable
_ref_content="12498"...> at /CAS[1]/org.apache.ctakes.coreference.type.NEMarkable[2]/@_ref_content
to <org.apache.ctakes.coreference.type.NEMarkable _ref_content="12533"...> at /CAS[1]/org.apache.ctakes.coreference.type.NEMarkable[2]/@_ref_content

[not identical] Expected attribute value '48' but was '38' - comparing <org.apache.ctakes.coreference.type.NEMarkable
id="48"...> at /CAS[1]/org.apache.ctakes.coreference.type.NEMarkable[2]/@id to <org.apache.ctakes.coreference.type.NEMarkable
id="38"...> at /CAS[1]/org.apache.ctakes.coreference.type.NEMarkable[2]/@id

[not identical] Expected attribute value '12602' but was '12448' - comparing <org.apache.ctakes.coreference.type.NEMarkable
_ref_content="12602"...> at /CAS[1]/org.apache.ctakes.coreference.type.NEMarkable[3]/@_ref_content
to <org.apache.ctakes.coreference.type.NEMarkable _ref_content="12448"...> at /CAS[1]/org.apache.ctakes.coreference.type.NEMarkable[3]/@_ref_content

[not identical] Expected attribute value '49' but was '39' - comparing <org.apache.ctakes.coreference.type.NEMarkable
id="49"...> at /CAS[1]/org.apache.ctakes.coreference.type.NEMarkable[3]/@id to <org.apache.ctakes.coreference.type.NEMarkable
id="39"...> at /CAS[1]/org.apache.ctakes.coreference.type.NEMarkable[3]/@id

[not identical] Expected attribute value '12574' but was '12609' - comparing <org.apache.ctakes.coreference.type.NEMarkable
_ref_content="12574"...> at /CAS[1]/org.apache.ctakes.coreference.type.NEMarkable[4]/@_ref_content
to <org.apache.ctakes.coreference.type.NEMarkable _ref_content="12609"...> at /CAS[1]/org.apache.ctakes.coreference.type.NEMarkable[4]/@_ref_content

[not identical] Expected attribute value '50' but was '40' - comparing <org.apache.ctakes.coreference.type.NEMarkable
id="50"...> at /CAS[1]/org.apache.ctakes.coreference.type.NEMarkable[4]/@id to <org.apache.ctakes.coreference.type.NEMarkable
id="40"...> at /CAS[1]/org.apache.ctakes.coreference.type.NEMarkable[4]/@id

[not identical] Expected attribute value '12535' but was '12570' - comparing <org.apache.ctakes.coreference.type.NEMarkable
_ref_content="12535"...> at /CAS[1]/org.apache.ctakes.coreference.type.NEMarkable[5]/@_ref_content
to <org.apache.ctakes.coreference.type.NEMarkable _ref_content="12570"...> at /CAS[1]/org.apache.ctakes.coreference.type.NEMarkable[5]/@_ref_content

[not identical] Expected attribute value '51' but was '41' - comparing <org.apache.ctakes.coreference.type.NEMarkable
id="51"...> at /CAS[1]/org.apache.ctakes.coreference.type.NEMarkable[5]/@id to <org.apache.ctakes.coreference.type.NEMarkable
id="41"...> at /CAS[1]/org.apache.ctakes.coreference.type.NEMarkable[5]/@id

[not identical] Expected attribute value '12597' but was '12443' - comparing <org.apache.ctakes.typesystem.type.refsem.OntologyConcept
_id="12597"...> at /CAS[1]/org.apache.ctakes.typesystem.type.refsem.OntologyConcept[1]/@_id
to <org.apache.ctakes.typesystem.type.refsem.OntologyConcept _id="12443"...> at /CAS[1]/org.apache.ctakes.typesystem.type.refsem.OntologyConcept[1]/@_id

[not identical] Expected sequence of child nodes '5047' but was '5065' - comparing <org.apache.ctakes.typesystem.type.refsem.OntologyConcept...>
at /CAS[1]/org.apache.ctakes.typesystem.type.refsem.OntologyConcept[1] to <org.apache.ctakes.typesystem.type.refsem.OntologyConcept...>
at /CAS[1]/org.apache.ctakes.typesystem.type.refsem.OntologyConcept[1]

[not identical] Expected attribute value '12594' but was '12606' - comparing <uima.cas.FSArray
_id="12594"...> at /CAS[1]/uima.cas.FSArray[147]/@_id to <uima.cas.FSArray _id="12606"...>
at /CAS[1]/uima.cas.FSArray[147]/@_id

[not identical] Expected text value '12597' but was '12599' - comparing <i ...>12597</i>
at /CAS[1]/uima.cas.FSArray[147]/i[1]/text()[1] to <i ...>12599</i> at /CAS[1]/uima.cas.FSArray[147]/i[1]/text()[1]

[not identical] Expected attribute value '12564' but was '12560' - comparing <org.apache.ctakes.typesystem.type.refsem.UmlsConcept
_id="12564"...> at /CAS[1]/org.apache.ctakes.typesystem.type.refsem.UmlsConcept[1]/@_id
to <org.apache.ctakes.typesystem.type.refsem.UmlsConcept _id="12560"...> at /CAS[1]/org.apache.ctakes.typesystem.type.refsem.UmlsConcept[2]/@_id

[not identical] Expected attribute value '100002' but was '100206' - comparing <org.apache.ctakes.typesystem.type.refsem.UmlsConcept
code="100002"...> at /CAS[1]/org.apache.ctakes.typesystem.type.refsem.UmlsConcept[1]/@code
to <org.apache.ctakes.typesystem.type.refsem.UmlsConcept code="100206"...> at /CAS[1]/org.apache.ctakes.typesystem.type.refsem.UmlsConcept[2]/@code

[not identical] Expected attribute value 'Cui0002' but was 'Cui0206' - comparing <org.apache.ctakes.typesystem.type.refsem.UmlsConcept
cui="Cui0002"...> at /CAS[1]/org.apache.ctakes.typesystem.type.refsem.UmlsConcept[1]/@cui
to <org.apache.ctakes.typesystem.type.refsem.UmlsConcept cui="Cui0206"...> at /CAS[1]/org.apache.ctakes.typesystem.type.refsem.UmlsConcept[2]/@cui

[not identical] Expected attribute value '100002#SNOMED' but was '100206#SNOMED' - comparing
<org.apache.ctakes.typesystem.type.refsem.UmlsConcept oid="100002#SNOMED"...> at /CAS[1]/org.apache.ctakes.typesystem.type.refsem.UmlsConcept[1]/@oid
to <org.apache.ctakes.typesystem.type.refsem.UmlsConcept oid="100206#SNOMED"...> at
/CAS[1]/org.apache.ctakes.typesystem.type.refsem.UmlsConcept[2]/@oid

[not identical] Expected attribute value 'T_AS' but was 'T_SS' - comparing <org.apache.ctakes.typesystem.type.refsem.UmlsConcept
tui="T_AS"...> at /CAS[1]/org.apache.ctakes.typesystem.type.refsem.UmlsConcept[1]/@tui
to <org.apache.ctakes.typesystem.type.refsem.UmlsConcept tui="T_SS"...> at /CAS[1]/org.apache.ctakes.typesystem.type.refsem.UmlsConcept[2]/@tui

[not identical] Expected attribute value '12571' but was '12567' - comparing <uima.cas.FSArray
_id="12571"...> at /CAS[1]/uima.cas.FSArray[148]/@_id to <uima.cas.FSArray _id="12567"...>
at /CAS[1]/uima.cas.FSArray[148]/@_id

[not identical] Expected text value '12564' but was '12560' - comparing <i ...>12564</i>
at /CAS[1]/uima.cas.FSArray[148]/i[1]/text()[1] to <i ...>12560</i> at /CAS[1]/uima.cas.FSArray[148]/i[1]/text()[1]

[not identical] Expected attribute value '12525' but was '12523' - comparing <org.apache.ctakes.typesystem.type.refsem.UmlsConcept
_id="12525"...> at /CAS[1]/org.apache.ctakes.typesystem.type.refsem.UmlsConcept[2]/@_id
to <org.apache.ctakes.typesystem.type.refsem.UmlsConcept _id="12523"...> at /CAS[1]/org.apache.ctakes.typesystem.type.refsem.UmlsConcept[3]/@_id

[not identical] Expected attribute value '100206' but was '100102' - comparing <org.apache.ctakes.typesystem.type.refsem.UmlsConcept
code="100206"...> at /CAS[1]/org.apache.ctakes.typesystem.type.refsem.UmlsConcept[2]/@code
to <org.apache.ctakes.typesystem.type.refsem.UmlsConcept code="100102"...> at /CAS[1]/org.apache.ctakes.typesystem.type.refsem.UmlsConcept[3]/@code

[not identical] Expected attribute value 'Cui0206' but was 'Cui0102' - comparing <org.apache.ctakes.typesystem.type.refsem.UmlsConcept
cui="Cui0206"...> at /CAS[1]/org.apache.ctakes.typesystem.type.refsem.UmlsConcept[2]/@cui
to <org.apache.ctakes.typesystem.type.refsem.UmlsConcept cui="Cui0102"...> at /CAS[1]/org.apache.ctakes.typesystem.type.refsem.UmlsConcept[3]/@cui

[not identical] Expected attribute value '100206#SNOMED' but was '100102#SNOMED' - comparing
<org.apache.ctakes.typesystem.type.refsem.UmlsConcept oid="100206#SNOMED"...> at /CAS[1]/org.apache.ctakes.typesystem.type.refsem.UmlsConcept[2]/@oid
to <org.apache.ctakes.typesystem.type.refsem.UmlsConcept oid="100102#SNOMED"...> at
/CAS[1]/org.apache.ctakes.typesystem.type.refsem.UmlsConcept[3]/@oid

[not identical] Expected attribute value 'T_SS' but was 'T_PR' - comparing <org.apache.ctakes.typesystem.type.refsem.UmlsConcept
tui="T_SS"...> at /CAS[1]/org.apache.ctakes.typesystem.type.refsem.UmlsConcept[2]/@tui
to <org.apache.ctakes.typesystem.type.refsem.UmlsConcept tui="T_PR"...> at /CAS[1]/org.apache.ctakes.typesystem.type.refsem.UmlsConcept[3]/@tui

[not identical] Expected attribute value '12532' but was '12530' - comparing <uima.cas.FSArray
_id="12532"...> at /CAS[1]/uima.cas.FSArray[149]/@_id to <uima.cas.FSArray _id="12530"...>
at /CAS[1]/uima.cas.FSArray[149]/@_id

[not identical] Expected text value '12525' but was '12523' - comparing <i ...>12525</i>
at /CAS[1]/uima.cas.FSArray[149]/i[1]/text()[1] to <i ...>12523</i> at /CAS[1]/uima.cas.FSArray[149]/i[1]/text()[1]

[not identical] Expected attribute value '12488' but was '12482' - comparing <org.apache.ctakes.typesystem.type.refsem.UmlsConcept
_id="12488"...> at /CAS[1]/org.apache.ctakes.typesystem.type.refsem.UmlsConcept[3]/@_id
to <org.apache.ctakes.typesystem.type.refsem.UmlsConcept _id="12482"...> at /CAS[1]/org.apache.ctakes.typesystem.type.refsem.UmlsConcept[4]/@_id

[not identical] Expected attribute value '100102' but was '200309' - comparing <org.apache.ctakes.typesystem.type.refsem.UmlsConcept
code="100102"...> at /CAS[1]/org.apache.ctakes.typesystem.type.refsem.UmlsConcept[3]/@code
to <org.apache.ctakes.typesystem.type.refsem.UmlsConcept code="200309"...> at /CAS[1]/org.apache.ctakes.typesystem.type.refsem.UmlsConcept[4]/@code

[not identical] Expected attribute value 'Cui0102' but was 'Cui0309' - comparing <org.apache.ctakes.typesystem.type.refsem.UmlsConcept
cui="Cui0102"...> at /CAS[1]/org.apache.ctakes.typesystem.type.refsem.UmlsConcept[3]/@cui
to <org.apache.ctakes.typesystem.type.refsem.UmlsConcept cui="Cui0309"...> at /CAS[1]/org.apache.ctakes.typesystem.type.refsem.UmlsConcept[4]/@cui

[not identical] Expected attribute value '100102#SNOMED' but was '200309#SNOMED' - comparing
<org.apache.ctakes.typesystem.type.refsem.UmlsConcept oid="100102#SNOMED"...> at /CAS[1]/org.apache.ctakes.typesystem.type.refsem.UmlsConcept[3]/@oid
to <org.apache.ctakes.typesystem.type.refsem.UmlsConcept oid="200309#SNOMED"...> at
/CAS[1]/org.apache.ctakes.typesystem.type.refsem.UmlsConcept[4]/@oid

[not identical] Expected attribute value 'T_PR' but was 'T_DD' - comparing <org.apache.ctakes.typesystem.type.refsem.UmlsConcept
tui="T_PR"...> at /CAS[1]/org.apache.ctakes.typesystem.type.refsem.UmlsConcept[3]/@tui
to <org.apache.ctakes.typesystem.type.refsem.UmlsConcept tui="T_DD"...> at /CAS[1]/org.apache.ctakes.typesystem.type.refsem.UmlsConcept[4]/@tui

[not identical] Expected attribute value '12495' but was '12489' - comparing <uima.cas.FSArray
_id="12495"...> at /CAS[1]/uima.cas.FSArray[150]/@_id to <uima.cas.FSArray _id="12489"...>
at /CAS[1]/uima.cas.FSArray[150]/@_id

[not identical] Expected attribute value '1' but was '2' - comparing <uima.cas.FSArray
size="1"...> at /CAS[1]/uima.cas.FSArray[150]/@size to <uima.cas.FSArray size="2"...>
at /CAS[1]/uima.cas.FSArray[150]/@size

[different] Expected number of child nodes '3' but was '5' - comparing <uima.cas.FSArray...>
at /CAS[1]/uima.cas.FSArray[150] to <uima.cas.FSArray...> at /CAS[1]/uima.cas.FSArray[150]

	at junit.framework.Assert.fail(Assert.java:50)
	at junit.framework.Assert.assertTrue(Assert.java:20)
	at org.apache.ctakes.regression.test.RegressionPipelineTest.compareXMLOutput(RegressionPipelineTest.java:148)
	at org.apache.ctakes.regression.test.RegressionPipelineTest$StatusCallbackListenerImpl.collectionProcessComplete(RegressionPipelineTest.java:201)
	at org.apache.uima.collection.impl.cpm.BaseCPMImpl.run(BaseCPMImpl.java:538)
	at java.lang.Thread.run(Thread.java:662)

Results :

Tests run: 0, Failures: 0, Errors: 0, Skipped: 0

[JENKINS] Recording test results

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