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From "Chen Lin (JIRA)" <j...@apache.org>
Subject [jira] [Resolved] (CTAKES-198) Drug NER only create drug signatures for RXNOM. Should it be extended to all identified MedicationEventMention?
Date Fri, 31 May 2013 15:39:20 GMT

     [ https://issues.apache.org/jira/browse/CTAKES-198?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel
]

Chen Lin resolved CTAKES-198.
-----------------------------

    Resolution: Fixed

Code scheme check was removed. Now drug signatures will be applied to all MedicationEventMention.
                
> Drug NER only create drug signatures for RXNOM. Should it be extended to all identified
MedicationEventMention?
> ---------------------------------------------------------------------------------------------------------------
>
>                 Key: CTAKES-198
>                 URL: https://issues.apache.org/jira/browse/CTAKES-198
>             Project: cTAKES
>          Issue Type: Improvement
>          Components: ctakes-drug-ner
>    Affects Versions: future enhancement
>            Reporter: Chen Lin
>            Priority: Minor
>              Labels: patch
>
> In DrugMentionAnnotator of the drug-ner module, it is hard-coded to only add drug signatures
(e.g. dosage, status change, strength, etc.) for RXNOM terms. Shouldn't the check for RXNOM
be removed, so that signatures can be added for all MedicationEventMentions?   
> while (uniqueNER.hasNext())
> 		{
> 			tokenAnt = (MedicationEventMention) uniqueNER.next();
> 			boolean isDrugNER = false;
> 			FSArray ocArr = tokenAnt.getOntologyConceptArr();
> 			if (ocArr != null)
> 			{
> 				for (int i = 0; i < ocArr.size() && !isDrugNER; i++)
> 				{
> 					OntologyConcept oc = (OntologyConcept) ocArr.get(i);
> 					String scheme = oc.getCodingScheme();
> 					if (scheme.compareTo("RXNORM") == 0)
> 					{
> 						isDrugNER = true;
> 					}
> 				}
> 			}

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