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From "Chen Lin (JIRA)" <j...@apache.org>
Subject [jira] [Created] (CTAKES-198) Drug NER only create drug signatures for RXNOM. Should it be extended to all identified MedicationEventMention?
Date Fri, 24 May 2013 19:25:20 GMT
Chen Lin created CTAKES-198:
-------------------------------

             Summary: Drug NER only create drug signatures for RXNOM. Should it be extended
to all identified MedicationEventMention?
                 Key: CTAKES-198
                 URL: https://issues.apache.org/jira/browse/CTAKES-198
             Project: cTAKES
          Issue Type: Improvement
          Components: ctakes-drug-ner
    Affects Versions: future enhancement
            Reporter: Chen Lin
            Priority: Minor


In DrugMentionAnnotator of the drug-ner module, it is hard-coded to only add drug signatures
(e.g. dosage, status change, strength, etc.) for RXNOM terms. Shouldn't the check for RXNOM
be removed, so that signatures can be added for all MedicationEventMentions?   

while (uniqueNER.hasNext())
		{

			tokenAnt = (MedicationEventMention) uniqueNER.next();
			boolean isDrugNER = false;
			FSArray ocArr = tokenAnt.getOntologyConceptArr();
			if (ocArr != null)
			{
				for (int i = 0; i < ocArr.size() && !isDrugNER; i++)
				{
					OntologyConcept oc = (OntologyConcept) ocArr.get(i);

					String scheme = oc.getCodingScheme();
					if (scheme.compareTo("RXNORM") == 0)
					{
						isDrugNER = true;
					}

				}
			}

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