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From Apache Jenkins Server <jenk...@builds.apache.org>
Subject Build failed in Jenkins: ctakes-trunk-compiletest #262
Date Mon, 20 May 2013 16:58:38 GMT
See <https://builds.apache.org/job/ctakes-trunk-compiletest/262/changes>

Changes:

[james-masanz] Make use of MergeGoldViewFromOneCasIntoInitialViewOfAnotherCas.
Also, allow for different number of annotations in gold view and system-generated annotations.

[james-masanz] annotator for reading XMI containing gold standard annotations and copying
them into a new view of the current CAS

------------------------------------------
[...truncated 1286 lines...]
[INFO] --- maven-clean-plugin:2.4.1:clean (default-clean) @ ctakes-chunker-res ---
[INFO] 
[INFO] --- maven-remote-resources-plugin:1.3:process (default) @ ctakes-chunker-res ---
[debug] execute contextualize
[INFO] [INFO] Using 'UTF-8' encoding to copy filtered resources.

[INFO] --- maven-resources-plugin:2.5:resources (default-resources) @ ctakes-chunker-res ---
[INFO] Copying 3 resources
[INFO] Copying 3 resources
[INFO] [INFO] No sources to compile

[INFO] --- maven-compiler-plugin:2.4:compile (default-compile) @ ctakes-chunker-res ---
[INFO] 
[INFO] --- maven-remote-resources-plugin:1.3:process (default) @ ctakes-chunker-res ---
[debug] execute contextualize
[INFO] [INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] Copying 3 resources
[INFO] Copying 3 resources
[INFO] Copying 3 resources

[INFO] --- maven-resources-plugin:2.5:resources (default-resources) @ ctakes-chunker-res ---
[INFO] [INFO] No sources to compile

[INFO] --- maven-compiler-plugin:2.4:compile (default-compile) @ ctakes-chunker-res ---
[debug] execute contextualize
[INFO] [INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-chunker-res/src/test/resources>
[INFO] Copying 3 resources
[INFO] Copying 3 resources

[INFO] --- maven-resources-plugin:2.5:testResources (default-testResources) @ ctakes-chunker-res
---
[INFO] [INFO] No sources to compile

[INFO] --- maven-compiler-plugin:2.4:testCompile (default-testCompile) @ ctakes-chunker-res
---
[INFO] [INFO] Surefire report directory: <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-chunker-res/target/surefire-reports>

-------------------------------------------------------
 T E S T S
-------------------------------------------------------

[INFO] --- maven-surefire-plugin:2.12:test (default-test) @ ctakes-chunker-res ---

Results :

Tests run: 0, Failures: 0, Errors: 0, Skipped: 0

[JENKINS] Recording test results
[INFO]                                                                         
[INFO] ------------------------------------------------------------------------
[INFO] Building Apache cTAKES chunker 3.1.0-SNAPSHOT
[INFO] ------------------------------------------------------------------------
[INFO] Deleting <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-chunker/target>
[INFO] 
[INFO] --- maven-clean-plugin:2.4.1:clean (default-clean) @ ctakes-chunker ---
[INFO] 
[INFO] --- maven-remote-resources-plugin:1.3:process (default) @ ctakes-chunker ---
Downloading: http://repo.maven.apache.org/maven2/jwnl/jwnl/1.3.3/jwnl-1.3.3.pom
[INFO] [debug] execute contextualize
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-chunker/src/main/resources>
[INFO] Copying 3 resources

[INFO] --- maven-resources-plugin:2.5:resources (default-resources) @ ctakes-chunker ---
[INFO] 
[INFO] --- maven-compiler-plugin:2.4:compile (default-compile) @ ctakes-chunker ---
[INFO] Compiling 5 source files to <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-chunker/target/classes>
[INFO] 
[INFO] --- maven-remote-resources-plugin:1.3:process (default) @ ctakes-chunker ---
Downloading: http://repo.maven.apache.org/maven2/jwnl/jwnl/1.3.3/jwnl-1.3.3.pom
[INFO] [debug] execute contextualize
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-chunker/src/main/resources>
[INFO] Copying 3 resources
[INFO] Copying 3 resources

[INFO] --- maven-resources-plugin:2.5:resources (default-resources) @ ctakes-chunker ---
[INFO] [INFO] Nothing to compile - all classes are up to date

[INFO] --- maven-compiler-plugin:2.4:compile (default-compile) @ ctakes-chunker ---
[debug] execute contextualize
[INFO] [INFO] Using 'UTF-8' encoding to copy filtered resources.

[INFO] --- maven-resources-plugin:2.5:testResources (default-testResources) @ ctakes-chunker
---
[INFO] Copying 10 resources
[INFO] Copying 3 resources
[INFO] Copying 3 resources
[INFO] [INFO] Compiling 2 source files to <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-chunker/target/test-classes>

[INFO] --- maven-compiler-plugin:2.4:testCompile (default-testCompile) @ ctakes-chunker ---
[INFO] [INFO] Surefire report directory: <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-chunker/target/surefire-reports>

-------------------------------------------------------
 T E S T S
-------------------------------------------------------

[INFO] --- maven-surefire-plugin:2.12:test (default-test) @ ctakes-chunker ---
Running org.apache.ctakes.chunker.ChunkerTests
Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.062 sec
Running org.apache.ctakes.chunker.ChunkAdjusterTests
Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0 sec

Results :

Tests run: 4, Failures: 0, Errors: 0, Skipped: 0

[JENKINS] Recording test results
[INFO]                                                                         
[INFO] ------------------------------------------------------------------------
[INFO] Building Apache cTAKES document preprocessor 3.1.0-SNAPSHOT
[INFO] ------------------------------------------------------------------------
[INFO] Deleting <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-preprocessor/target>
[INFO] 
[INFO] --- maven-clean-plugin:2.4.1:clean (default-clean) @ ctakes-preprocessor ---
[INFO] 
[INFO] --- maven-remote-resources-plugin:1.3:process (default) @ ctakes-preprocessor ---
Downloading: http://repo.maven.apache.org/maven2/jwnl/jwnl/1.3.3/jwnl-1.3.3.pom
[debug] execute contextualize
[INFO] [INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] Copying 4 resources
[INFO] Copying 3 resources

[INFO] --- maven-resources-plugin:2.5:resources (default-resources) @ ctakes-preprocessor
---
[INFO] [INFO] Compiling 10 source files to <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-preprocessor/target/classes>

[INFO] --- maven-compiler-plugin:2.4:compile (default-compile) @ ctakes-preprocessor ---
[WARNING] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-preprocessor/src/main/java/org/apache/ctakes/preprocessor/ClinicalNotePreProcessor.java>:[889,29]
[unchecked] unchecked call to add(E) as a member of the raw type java.util.List
[WARNING] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-preprocessor/src/main/java/org/apache/ctakes/preprocessor/DocumentMetaData.java>:[50,23]
[unchecked] unchecked call to put(K,V) as a member of the raw type java.util.Map
[WARNING] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-preprocessor/src/main/java/org/apache/ctakes/preprocessor/DocumentMetaData.java>:[97,25]
[unchecked] unchecked call to add(E) as a member of the raw type java.util.List
[WARNING] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-preprocessor/src/main/java/org/apache/ctakes/preprocessor/DocumentMetaData.java>:[106,28]
[unchecked] unchecked call to addAll(java.util.Collection<? extends E>) as a member
of the raw type java.util.List
[INFO] Downloading: http://repo.maven.apache.org/maven2/jwnl/jwnl/1.3.3/jwnl-1.3.3.pom

[INFO] --- maven-remote-resources-plugin:1.3:process (default) @ ctakes-preprocessor ---
[debug] execute contextualize
[INFO] [INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] Copying 4 resources
[INFO] Copying 3 resources
[INFO] Copying 3 resources

[INFO] --- maven-resources-plugin:2.5:resources (default-resources) @ ctakes-preprocessor
---
[INFO] Nothing to compile - all classes are up to date
[INFO] 
[INFO] --- maven-compiler-plugin:2.4:compile (default-compile) @ ctakes-preprocessor ---
[INFO] [debug] execute contextualize
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] Copying 2 resources
[INFO] Copying 3 resources
[INFO] Copying 3 resources

[INFO] --- maven-resources-plugin:2.5:testResources (default-testResources) @ ctakes-preprocessor
---
[INFO] [INFO] Compiling 1 source file to <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-preprocessor/target/test-classes>

[INFO] --- maven-compiler-plugin:2.4:testCompile (default-testCompile) @ ctakes-preprocessor
---
[INFO] [INFO] Surefire report directory: <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-preprocessor/target/surefire-reports>

-------------------------------------------------------
 T E S T S
-------------------------------------------------------

[INFO] --- maven-surefire-plugin:2.12:test (default-test) @ ctakes-preprocessor ---
Running org.apache.ctakes.preprocessor.ClinicalNotePreProcessorTest
log4j: reset attribute= "false".
log4j: Threshold ="null".
log4j: Level value for root is  [INFO].
log4j: root level set to INFO
log4j: Class name: [org.apache.log4j.ConsoleAppender]
log4j: Parsing layout of class: "org.apache.log4j.PatternLayout"
log4j: Setting property [conversionPattern] to [%d{dd MMM yyyy HH:mm:ss} %5p %c{1} - %m%n].
log4j: Adding appender named [consoleAppender] to category [root].
Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.473 sec

Results :

Tests run: 1, Failures: 0, Errors: 0, Skipped: 0

[JENKINS] Recording test results
[INFO] [INFO] Deleting <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-dictionary-lookup-res/target>
                                                                        
[INFO] ------------------------------------------------------------------------
[INFO] Building Apache cTAKES Resources dictionary-lookup 3.1.0-SNAPSHOT
[INFO] ------------------------------------------------------------------------
[INFO] 
[INFO] --- maven-clean-plugin:2.4.1:clean (default-clean) @ ctakes-dictionary-lookup-res ---
[INFO] 
[INFO] --- maven-remote-resources-plugin:1.3:process (default) @ ctakes-dictionary-lookup-res
---
[debug] execute contextualize
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] 
[INFO] --- maven-resources-plugin:2.5:resources (default-resources) @ ctakes-dictionary-lookup-res
---
[INFO] Copying 68 resources
[INFO] Copying 3 resources
[INFO] [INFO] No sources to compile

[INFO] --- maven-compiler-plugin:2.4:compile (default-compile) @ ctakes-dictionary-lookup-res
---
[INFO] 
[INFO] --- maven-remote-resources-plugin:1.3:process (default) @ ctakes-dictionary-lookup-res
---
[debug] execute contextualize
[INFO] [INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] Copying 68 resources
[INFO] Copying 3 resources
[INFO] Copying 3 resources

[INFO] --- maven-resources-plugin:2.5:resources (default-resources) @ ctakes-dictionary-lookup-res
---
[INFO] [INFO] No sources to compile

[INFO] --- maven-compiler-plugin:2.4:compile (default-compile) @ ctakes-dictionary-lookup-res
---
[debug] execute contextualize
[INFO] [INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-dictionary-lookup-res/src/test/resources>
[INFO] Copying 3 resources
[INFO] Copying 3 resources

[INFO] --- maven-resources-plugin:2.5:testResources (default-testResources) @ ctakes-dictionary-lookup-res
---
[INFO] [INFO] No sources to compile

[INFO] --- maven-compiler-plugin:2.4:testCompile (default-testCompile) @ ctakes-dictionary-lookup-res
---
[INFO] [INFO] Surefire report directory: <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-dictionary-lookup-res/target/surefire-reports>

-------------------------------------------------------
 T E S T S
-------------------------------------------------------

[INFO] --- maven-surefire-plugin:2.12:test (default-test) @ ctakes-dictionary-lookup-res ---

Results :

Tests run: 0, Failures: 0, Errors: 0, Skipped: 0

[JENKINS] Recording test results
[INFO]                                                                         
[INFO] ------------------------------------------------------------------------
[INFO] Building Apache cTAKES dictionary lookup 3.1.0-SNAPSHOT
[INFO] ------------------------------------------------------------------------
[INFO] Deleting <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-dictionary-lookup/target>
[INFO] 
[INFO] --- maven-clean-plugin:2.4.1:clean (default-clean) @ ctakes-dictionary-lookup ---
[INFO] Downloading: http://repo.maven.apache.org/maven2/jwnl/jwnl/1.3.3/jwnl-1.3.3.pom

[INFO] --- maven-remote-resources-plugin:1.3:process (default) @ ctakes-dictionary-lookup
---
[debug] execute contextualize
[INFO] [INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-dictionary-lookup/src/main/resources>
[INFO] Copying 3 resources

[INFO] --- maven-resources-plugin:2.5:resources (default-resources) @ ctakes-dictionary-lookup
---
[INFO] 
[INFO] --- maven-dependency-plugin:2.6:unpack-dependencies (unpack-dependencies) @ ctakes-dictionary-lookup
---
[INFO] Unpacking /home/jenkins/jenkins-slave/maven-repositories/1/net/sourceforge/ctakesresources/ctakes-resources-umls2011ab/3.1.0/ctakes-resources-umls2011ab-3.1.0.jar
to <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-dictionary-lookup/target/classes>
with includes "" and excludes ""
ERROR: Maven JVM terminated unexpectedly with exit code 143


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