Return-Path: X-Original-To: apmail-ctakes-notifications-archive@www.apache.org Delivered-To: apmail-ctakes-notifications-archive@www.apache.org Received: from mail.apache.org (hermes.apache.org [140.211.11.3]) by minotaur.apache.org (Postfix) with SMTP id 5E6C6F922 for ; Tue, 23 Apr 2013 19:51:58 +0000 (UTC) Received: (qmail 53811 invoked by uid 500); 23 Apr 2013 19:51:58 -0000 Delivered-To: apmail-ctakes-notifications-archive@ctakes.apache.org Received: (qmail 53777 invoked by uid 500); 23 Apr 2013 19:51:58 -0000 Mailing-List: contact notifications-help@ctakes.apache.org; run by ezmlm Precedence: bulk List-Help: List-Unsubscribe: List-Post: List-Id: Reply-To: ctakes-dev@ctakes.apache.org Delivered-To: mailing list notifications@ctakes.apache.org Received: (qmail 53761 invoked by uid 500); 23 Apr 2013 19:51:57 -0000 Delivered-To: apmail-incubator-ctakes-notifications@incubator.apache.org Received: (qmail 53757 invoked by uid 99); 23 Apr 2013 19:51:57 -0000 Received: from athena.apache.org (HELO athena.apache.org) (140.211.11.136) by apache.org (qpsmtpd/0.29) with ESMTP; Tue, 23 Apr 2013 19:51:57 +0000 X-ASF-Spam-Status: No, hits=-2000.0 required=5.0 tests=ALL_TRUSTED X-Spam-Check-By: apache.org Received: from [140.211.11.8] (HELO aegis.apache.org) (140.211.11.8) by apache.org (qpsmtpd/0.29) with ESMTP; Tue, 23 Apr 2013 19:51:51 +0000 Received: from aegis.apache.org (localhost [127.0.0.1]) by aegis.apache.org (Postfix) with ESMTP id 1C69EC0071; Tue, 23 Apr 2013 19:51:31 +0000 (UTC) Date: Tue, 23 Apr 2013 19:47:11 +0000 (UTC) From: Apache Jenkins Server To: ctakes-notifications@incubator.apache.org, dmitriy.dligach@childrens.harvard.edu, chen.lin@childrens.harvard.edu, timothy.miller@childrens.harvard.edu Message-ID: <1586983757.4241.1366746691097.JavaMail.hudson@aegis> In-Reply-To: <972147783.4167.1366707137297.JavaMail.hudson@aegis> References: <972147783.4167.1366707137297.JavaMail.hudson@aegis> Subject: Build failed in Jenkins: ctakes-trunk-compiletest #233 MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 7bit X-Jenkins-Job: ctakes-trunk-compiletest X-Jenkins-Result: FAILURE X-Virus-Checked: Checked by ClamAV on apache.org See Changes: [dligach] Fixed a bug (changed the order of time and event as arguments of CONTAINS) [dligach] Baseline that marks "CONTAINS" relation between a time expression and the nearest event mention [clin] make the null check statement succinct. [clin] fix a type in DocTimeRelAnnotator to get the right EventPropertyExtractor [clin] Removing unused EvevPropertyExtractor replaced with EventPropertyExtractor.java [clin] rename the event property extractor. add a null check for feature extraction [tmill] Added DependencyRegex class back in. ------------------------------------------ [...truncated 1301 lines...] [INFO] --- maven-clean-plugin:2.4.1:clean (default-clean) @ ctakes-chunker-res --- [INFO] [INFO] --- maven-remote-resources-plugin:1.3:process (default) @ ctakes-chunker-res --- [INFO] [debug] execute contextualize [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] --- maven-resources-plugin:2.5:resources (default-resources) @ ctakes-chunker-res --- [INFO] Copying 3 resources [INFO] Copying 3 resources [INFO] [INFO] No sources to compile [INFO] --- maven-compiler-plugin:2.4:compile (default-compile) @ ctakes-chunker-res --- [INFO] [INFO] --- maven-remote-resources-plugin:1.3:process (default) @ ctakes-chunker-res --- [INFO] [debug] execute contextualize [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 3 resources [INFO] Copying 3 resources [INFO] Copying 3 resources [INFO] --- maven-resources-plugin:2.5:resources (default-resources) @ ctakes-chunker-res --- [INFO] [INFO] No sources to compile [INFO] --- maven-compiler-plugin:2.4:compile (default-compile) @ ctakes-chunker-res --- [INFO] [debug] execute contextualize [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] skip non existing resourceDirectory [INFO] Copying 3 resources [INFO] Copying 3 resources [INFO] --- maven-resources-plugin:2.5:testResources (default-testResources) @ ctakes-chunker-res --- [INFO] [INFO] No sources to compile [INFO] --- maven-compiler-plugin:2.4:testCompile (default-testCompile) @ ctakes-chunker-res --- [INFO] [INFO] Surefire report directory: ------------------------------------------------------- T E S T S ------------------------------------------------------- [INFO] --- maven-surefire-plugin:2.12:test (default-test) @ ctakes-chunker-res --- Results : Tests run: 0, Failures: 0, Errors: 0, Skipped: 0 [JENKINS] Recording test results [INFO] [INFO] ------------------------------------------------------------------------ [INFO] Building Apache cTAKES chunker 3.1.0-SNAPSHOT [INFO] ------------------------------------------------------------------------ [INFO] Deleting [INFO] [INFO] --- maven-clean-plugin:2.4.1:clean (default-clean) @ ctakes-chunker --- [INFO] [INFO] --- maven-remote-resources-plugin:1.3:process (default) @ ctakes-chunker --- Downloading: http://repo.maven.apache.org/maven2/jwnl/jwnl/1.3.3/jwnl-1.3.3.pom [INFO] [INFO] --- maven-resources-plugin:2.5:resources (default-resources) @ ctakes-chunker --- [debug] execute contextualize [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] skip non existing resourceDirectory [INFO] Copying 3 resources [INFO] [INFO] --- maven-compiler-plugin:2.4:compile (default-compile) @ ctakes-chunker --- [INFO] Compiling 5 source files to [INFO] [INFO] --- maven-remote-resources-plugin:1.3:process (default) @ ctakes-chunker --- Downloading: http://repo.maven.apache.org/maven2/jwnl/jwnl/1.3.3/jwnl-1.3.3.pom [INFO] [INFO] --- maven-resources-plugin:2.5:resources (default-resources) @ ctakes-chunker --- [debug] execute contextualize [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] skip non existing resourceDirectory [INFO] Copying 3 resources [INFO] Copying 3 resources [INFO] [INFO] --- maven-compiler-plugin:2.4:compile (default-compile) @ ctakes-chunker --- [INFO] [INFO] Nothing to compile - all classes are up to date [INFO] --- maven-resources-plugin:2.5:testResources (default-testResources) @ ctakes-chunker --- [debug] execute contextualize [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 10 resources [INFO] Copying 3 resources [INFO] Copying 3 resources [INFO] [INFO] --- maven-compiler-plugin:2.4:testCompile (default-testCompile) @ ctakes-chunker --- [INFO] Compiling 2 source files to [INFO] [INFO] --- maven-surefire-plugin:2.12:test (default-test) @ ctakes-chunker --- [INFO] Surefire report directory: ------------------------------------------------------- T E S T S ------------------------------------------------------- Running org.apache.ctakes.chunker.ChunkerTests [JENKINS] Recording test resultsTests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.061 sec Running org.apache.ctakes.chunker.ChunkAdjusterTests Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0 sec Results : Tests run: 4, Failures: 0, Errors: 0, Skipped: 0 [INFO] [INFO] ------------------------------------------------------------------------ [INFO] Building Apache cTAKES document preprocessor 3.1.0-SNAPSHOT [INFO] ------------------------------------------------------------------------ [INFO] [INFO] --- maven-clean-plugin:2.4.1:clean (default-clean) @ ctakes-preprocessor --- [INFO] Deleting [INFO] [INFO] --- maven-remote-resources-plugin:1.3:process (default) @ ctakes-preprocessor --- Downloading: http://repo.maven.apache.org/maven2/jwnl/jwnl/1.3.3/jwnl-1.3.3.pom [INFO] [INFO] --- maven-resources-plugin:2.5:resources (default-resources) @ ctakes-preprocessor --- [debug] execute contextualize [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 4 resources [INFO] Copying 3 resources [INFO] [INFO] --- maven-compiler-plugin:2.4:compile (default-compile) @ ctakes-preprocessor --- [INFO] Compiling 10 source files to [WARNING] :[889,29] [unchecked] unchecked call to add(E) as a member of the raw type java.util.List [WARNING] :[50,23] [unchecked] unchecked call to put(K,V) as a member of the raw type java.util.Map [WARNING] :[97,25] [unchecked] unchecked call to add(E) as a member of the raw type java.util.List [WARNING] :[106,28] [unchecked] unchecked call to addAll(java.util.Collection) as a member of the raw type java.util.List [INFO] [INFO] --- maven-remote-resources-plugin:1.3:process (default) @ ctakes-preprocessor --- Downloading: http://repo.maven.apache.org/maven2/jwnl/jwnl/1.3.3/jwnl-1.3.3.pom [INFO] [debug] execute contextualize [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 4 resources [INFO] Copying 3 resources [INFO] Copying 3 resources [INFO] --- maven-resources-plugin:2.5:resources (default-resources) @ ctakes-preprocessor --- [INFO] [INFO] --- maven-compiler-plugin:2.4:compile (default-compile) @ ctakes-preprocessor --- [INFO] Nothing to compile - all classes are up to date [INFO] [INFO] --- maven-resources-plugin:2.5:testResources (default-testResources) @ ctakes-preprocessor --- [debug] execute contextualize [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 2 resources [INFO] Copying 3 resources [INFO] Copying 3 resources [INFO] [INFO] Compiling 1 source file to [INFO] --- maven-compiler-plugin:2.4:testCompile (default-testCompile) @ ctakes-preprocessor --- [INFO] [INFO] [INFO] Surefire report directory: ------------------------------------------------------- T E S T S ------------------------------------------------------- --- maven-surefire-plugin:2.12:test (default-test) @ ctakes-preprocessor --- Running org.apache.ctakes.preprocessor.ClinicalNotePreProcessorTest log4j: reset attribute= "false". log4j: Threshold ="null". log4j: Level value for root is [INFO]. log4j: root level set to INFO log4j: Class name: [org.apache.log4j.ConsoleAppender] log4j: Parsing layout of class: "org.apache.log4j.PatternLayout" log4j: Setting property [conversionPattern] to [%d{dd MMM yyyy HH:mm:ss} %5p %c{1} - %m%n]. log4j: Adding appender named [consoleAppender] to category [root]. Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.466 sec Results : Tests run: 1, Failures: 0, Errors: 0, Skipped: 0 [JENKINS] Recording test results [INFO] [INFO] ------------------------------------------------------------------------ [INFO] Building Apache cTAKES Resources dictionary-lookup 3.1.0-SNAPSHOT [INFO] ------------------------------------------------------------------------ [INFO] [INFO] --- maven-clean-plugin:2.4.1:clean (default-clean) @ ctakes-dictionary-lookup-res --- [INFO] Deleting [INFO] [INFO] --- maven-remote-resources-plugin:1.3:process (default) @ ctakes-dictionary-lookup-res --- [INFO] [INFO] --- maven-resources-plugin:2.5:resources (default-resources) @ ctakes-dictionary-lookup-res --- [debug] execute contextualize [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 68 resources [INFO] Copying 3 resources [INFO] [INFO] --- maven-compiler-plugin:2.4:compile (default-compile) @ ctakes-dictionary-lookup-res --- [INFO] No sources to compile [INFO] [INFO] --- maven-remote-resources-plugin:1.3:process (default) @ ctakes-dictionary-lookup-res --- [INFO] [debug] execute contextualize [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 68 resources [INFO] Copying 3 resources [INFO] Copying 3 resources [INFO] --- maven-resources-plugin:2.5:resources (default-resources) @ ctakes-dictionary-lookup-res --- [INFO] [INFO] No sources to compile [INFO] --- maven-compiler-plugin:2.4:compile (default-compile) @ ctakes-dictionary-lookup-res --- [INFO] [INFO] --- maven-resources-plugin:2.5:testResources (default-testResources) @ ctakes-dictionary-lookup-res --- [debug] execute contextualize [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] skip non existing resourceDirectory [INFO] Copying 3 resources [INFO] Copying 3 resources [INFO] [INFO] --- maven-compiler-plugin:2.4:testCompile (default-testCompile) @ ctakes-dictionary-lookup-res --- [INFO] No sources to compile [INFO] [INFO] Surefire report directory: ------------------------------------------------------- T E S T S ------------------------------------------------------- [INFO] --- maven-surefire-plugin:2.12:test (default-test) @ ctakes-dictionary-lookup-res --- Results : Tests run: 0, Failures: 0, Errors: 0, Skipped: 0 [JENKINS] Recording test results [INFO] [INFO] ------------------------------------------------------------------------ [INFO] Building Apache cTAKES dictionary lookup 3.1.0-SNAPSHOT [INFO] ------------------------------------------------------------------------ [INFO] [INFO] Deleting [INFO] --- maven-clean-plugin:2.4.1:clean (default-clean) @ ctakes-dictionary-lookup --- [INFO] Downloading: http://repo.maven.apache.org/maven2/jwnl/jwnl/1.3.3/jwnl-1.3.3.pom [INFO] --- maven-remote-resources-plugin:1.3:process (default) @ ctakes-dictionary-lookup --- [debug] execute contextualize [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] skip non existing resourceDirectory [INFO] [INFO] Copying 3 resources [INFO] --- maven-resources-plugin:2.5:resources (default-resources) @ ctakes-dictionary-lookup --- [INFO] [INFO] --- maven-dependency-plugin:2.6:unpack-dependencies (unpack-dependencies) @ ctakes-dictionary-lookup --- [INFO] Unpacking /home/jenkins/jenkins-slave/maven-repositories/1/net/sourceforge/ctakesresources/ctakes-resources-umls2011ab/3.1.0/ctakes-resources-umls2011ab-3.1.0.jar to with includes "" and excludes "" ERROR: Maven JVM terminated unexpectedly with exit code 143