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From Apache Jenkins Server <jenk...@builds.apache.org>
Subject Build failed in Jenkins: ctakes-trunk-compiletest #190
Date Tue, 26 Feb 2013 03:15:48 GMT
See <https://builds.apache.org/job/ctakes-trunk-compiletest/190/changes>

Changes:

[seanfinan] CTAKES-159 : Added some typing
CTAKES-160 : Refined some Exception try/catch and throws
CTAKES-161 : modernizing for jdk 1.5+
Some improvements to the dictionary-lookup led to refactoring
Some faster consumer implementations (pulled redundancies out of inner iterations)

------------------------------------------
[...truncated 1033 lines...]
26 Feb 2013 03:14:43  INFO TokenizerAnnotatorPTBTests - - - - - - - - - - - - - - - - - -
- - - - - - - - - - - - - - - - - - - - - - -
26 Feb 2013 03:14:43  INFO TokenizerAnnotatorPTBTests - Test PTB Tokenizer for string (shown
here in quotes) "he ... she  "
26 Feb 2013 03:14:43  INFO TokenizerAnnotatorPTBTests - Verified 3 token(s) using assertions.
26 Feb 2013 03:14:43  INFO SentenceDetector - Starting processing.
26 Feb 2013 03:14:43  INFO TokenizerAnnotatorPTB - process(JCas) in org.apache.ctakes.core.ae.TokenizerAnnotatorPTB
26 Feb 2013 03:14:43  INFO TokenizerAnnotatorPTBTests - - - - - - - - - - - - - - - - - -
- - - - - - - - - - - - - - - - - - - - - - -
26 Feb 2013 03:14:43  INFO TokenizerAnnotatorPTBTests - Test PTB Tokenizer for string (shown
here in quotes) "5-1212 1-800-555-1212 55901-9999  "
26 Feb 2013 03:14:43  INFO TokenizerAnnotatorPTBTests - Verified 3 token(s) using assertions.
26 Feb 2013 03:14:43  INFO SentenceDetector - Starting processing.
26 Feb 2013 03:14:43  INFO TokenizerAnnotatorPTB - process(JCas) in org.apache.ctakes.core.ae.TokenizerAnnotatorPTB
26 Feb 2013 03:14:43  INFO TokenizerAnnotatorPTBTests - - - - - - - - - - - - - - - - - -
- - - - - - - - - - - - - - - - - - - - - - -
26 Feb 2013 03:14:43  INFO TokenizerAnnotatorPTBTests - Test PTB Tokenizer for string (shown
here in quotes) "80's P'yongyang 'Assad 2000's  "
26 Feb 2013 03:14:43  INFO TokenizerAnnotatorPTBTests - Verified 4 token(s) using assertions.
26 Feb 2013 03:14:43  INFO SentenceDetector - Starting processing.
26 Feb 2013 03:14:43  INFO TokenizerAnnotatorPTB - process(JCas) in org.apache.ctakes.core.ae.TokenizerAnnotatorPTB
26 Feb 2013 03:14:43  INFO TokenizerAnnotatorPTBTests - - - - - - - - - - - - - - - - - -
- - - - - - - - - - - - - - - - - - - - - - -
26 Feb 2013 03:14:43  INFO TokenizerAnnotatorPTBTests - Test PTB Tokenizer for string (shown
here in quotes) "80's-esque  "
26 Feb 2013 03:14:43  INFO TokenizerAnnotatorPTBTests - Verified 1 token(s) using assertions.
Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 2.295 sec
Running org.apache.ctakes.core.ae.SimpleSegmentAnnotatorTests
Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.137 sec
Running org.apache.ctakes.core.ci.HyphenTextModifierImplTests
OK to see the following 4 had been written to stderr:
Orig: Non  Hodgkin's the x  ray without any non small  cell complications.
Non-Hodgkin Orig: 0-12 New: 0-11
x-ray Orig: 19-25 New: 18-23
non-small-cell Orig: 38-53 New: 36-50
Orig: Non Hodgkin's the x ray without any non small cell complications.
New:  Non-Hodgkin's the x-ray without any non-small-cell complications.
Non-Hodgkin Orig: 0-11 New: 0-11
x-ray Orig: 18-23 New: 18-23
non-small-cell Orig: 36-50 New: 36-50
UNSUPPORTED: TextModification with offset changes.
UNSUPPORTED: TextModification with offset changes.
UNSUPPORTED: TextModification with offset changes.
New:  (new text not generated, see previous messages)
Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.147 sec

Results :

Tests run: 3, Failures: 0, Errors: 0, Skipped: 0

[JENKINS] Recording test results
[INFO] [INFO] Deleting <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-pos-tagger/target>
                                                                        
[INFO] ------------------------------------------------------------------------
[INFO] Building Apache cTAKES part-of-speech tagger 3.1.0-incubating-SNAPSHOT
[INFO] ------------------------------------------------------------------------
[INFO] 
[INFO] --- maven-clean-plugin:2.4.1:clean (default-clean) @ ctakes-pos-tagger ---
[INFO] 
[INFO] --- maven-remote-resources-plugin:1.3:process (default) @ ctakes-pos-tagger ---
[INFO] [debug] execute contextualize
[INFO] Using 'UTF-8' encoding to copy filtered resources.

[INFO] --- maven-resources-plugin:2.5:resources (default-resources) @ ctakes-pos-tagger ---
[INFO] Copying 6 resources
[INFO] Copying 3 resources
[INFO] [INFO] Compiling 3 source files to <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-pos-tagger/target/classes>

[INFO] --- maven-compiler-plugin:2.4:compile (default-compile) @ ctakes-pos-tagger ---
[WARNING] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-pos-tagger/src/main/java/org/apache/ctakes/postagger/POSTagger.java>:[151,20]
[deprecation] POSDictionary(java.lang.String,boolean) in opennlp.tools.postag.POSDictionary
has been deprecated
[WARNING] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-pos-tagger/src/main/java/org/apache/ctakes/postagger/POSTagger.java>:[192,24]
[deprecation] tag(java.util.List<java.lang.String>) in opennlp.tools.postag.POSTaggerME
has been deprecated
[INFO] 
[INFO] --- maven-remote-resources-plugin:1.3:process (default) @ ctakes-pos-tagger ---
[INFO] [debug] execute contextualize
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] Copying 6 resources
[INFO] Copying 3 resources
[INFO] Copying 3 resources

[INFO] --- maven-resources-plugin:2.5:resources (default-resources) @ ctakes-pos-tagger ---
[INFO] [INFO] Nothing to compile - all classes are up to date

[INFO] --- maven-compiler-plugin:2.4:compile (default-compile) @ ctakes-pos-tagger ---
[INFO] [debug] execute contextualize
[INFO] Using 'UTF-8' encoding to copy filtered resources.

[INFO] --- maven-resources-plugin:2.5:testResources (default-testResources) @ ctakes-pos-tagger
---
[INFO] Copying 8 resources
[INFO] Copying 3 resources
[INFO] Copying 3 resources
[INFO] [INFO] Compiling 4 source files to <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-pos-tagger/target/test-classes>

[INFO] --- maven-compiler-plugin:2.4:testCompile (default-testCompile) @ ctakes-pos-tagger
---
[INFO] [INFO] Surefire report directory: <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-pos-tagger/target/surefire-reports>

-------------------------------------------------------
 T E S T S
-------------------------------------------------------

[INFO] --- maven-surefire-plugin:2.12:test (default-test) @ ctakes-pos-tagger ---
Running org.apache.ctakes.postagger.test.OpenNLPPOSCollectionReaderTests
Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 1.481 sec
Running org.apache.ctakes.postagger.test.POSTaggerTests
Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0 sec
Running org.apache.ctakes.postagger.test.TagDictionaryCreatorTests
TagDictionary written to target/test-classes/data/output/unit-test-2lines-tag-dictionary.txt
Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.004 sec

Results :

Tests run: 6, Failures: 0, Errors: 0, Skipped: 0

[JENKINS] Recording test results
[INFO] [INFO] Deleting <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-chunker/target>
                                                                        
[INFO] ------------------------------------------------------------------------
[INFO] Building Apache cTAKES chunker 3.1.0-incubating-SNAPSHOT
[INFO] ------------------------------------------------------------------------
[INFO] 
[INFO] --- maven-clean-plugin:2.4.1:clean (default-clean) @ ctakes-chunker ---
[INFO] 
[INFO] --- maven-remote-resources-plugin:1.3:process (default) @ ctakes-chunker ---
[INFO] [debug] execute contextualize
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] Copying 3 resources

[INFO] --- maven-resources-plugin:2.5:resources (default-resources) @ ctakes-chunker ---
[INFO] Copying 3 resources
[INFO] [INFO] Compiling 5 source files to <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-chunker/target/classes>

[INFO] --- maven-compiler-plugin:2.4:compile (default-compile) @ ctakes-chunker ---
[INFO] 
[INFO] --- maven-remote-resources-plugin:1.3:process (default) @ ctakes-chunker ---
[INFO] [debug] execute contextualize
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] Copying 3 resources
[INFO] Copying 3 resources
[INFO] Copying 3 resources

[INFO] --- maven-resources-plugin:2.5:resources (default-resources) @ ctakes-chunker ---
[INFO] [INFO] Nothing to compile - all classes are up to date

[INFO] --- maven-compiler-plugin:2.4:compile (default-compile) @ ctakes-chunker ---
[debug] execute contextualize
[INFO] [INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] Copying 10 resources
[INFO] Copying 3 resources
[INFO] Copying 3 resources

[INFO] --- maven-resources-plugin:2.5:testResources (default-testResources) @ ctakes-chunker
---
[INFO] [INFO] Compiling 2 source files to <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-chunker/target/test-classes>

[INFO] --- maven-compiler-plugin:2.4:testCompile (default-testCompile) @ ctakes-chunker ---
[INFO] [INFO] Surefire report directory: <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-chunker/target/surefire-reports>

-------------------------------------------------------
 T E S T S
-------------------------------------------------------

[INFO] --- maven-surefire-plugin:2.12:test (default-test) @ ctakes-chunker ---
Running org.apache.ctakes.chunker.ChunkerTests
Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.051 sec
Running org.apache.ctakes.chunker.ChunkAdjusterTests
Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0 sec

Results :

Tests run: 4, Failures: 0, Errors: 0, Skipped: 0

[JENKINS] Recording test results
[INFO]                                                                         
[INFO] ------------------------------------------------------------------------
[INFO] Building Apache cTAKES document preprocessor 3.1.0-incubating-SNAPSHOT
[INFO] ------------------------------------------------------------------------
[INFO] [INFO] Deleting <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-preprocessor/target>

[INFO] --- maven-clean-plugin:2.4.1:clean (default-clean) @ ctakes-preprocessor ---
[INFO] 
[INFO] --- maven-remote-resources-plugin:1.3:process (default) @ ctakes-preprocessor ---
[INFO] [debug] execute contextualize
[INFO] Using 'UTF-8' encoding to copy filtered resources.

[INFO] --- maven-resources-plugin:2.5:resources (default-resources) @ ctakes-preprocessor
---
[INFO] Copying 4 resources
[INFO] Copying 3 resources
[INFO] 
[INFO] --- maven-compiler-plugin:2.4:compile (default-compile) @ ctakes-preprocessor ---
[INFO] Compiling 10 source files to <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-preprocessor/target/classes>
[WARNING] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-preprocessor/src/main/java/org/apache/ctakes/preprocessor/ClinicalNotePreProcessor.java>:[889,29]
[unchecked] unchecked call to add(E) as a member of the raw type java.util.List
[WARNING] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-preprocessor/src/main/java/org/apache/ctakes/preprocessor/DocumentMetaData.java>:[50,23]
[unchecked] unchecked call to put(K,V) as a member of the raw type java.util.Map
[WARNING] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-preprocessor/src/main/java/org/apache/ctakes/preprocessor/DocumentMetaData.java>:[97,25]
[unchecked] unchecked call to add(E) as a member of the raw type java.util.List
[WARNING] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-preprocessor/src/main/java/org/apache/ctakes/preprocessor/DocumentMetaData.java>:[106,28]
[unchecked] unchecked call to addAll(java.util.Collection<? extends E>) as a member
of the raw type java.util.List
[INFO] 
[INFO] --- maven-remote-resources-plugin:1.3:process (default) @ ctakes-preprocessor ---
[INFO] [debug] execute contextualize
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] Copying 4 resources
[INFO] Copying 3 resources
[INFO] Copying 3 resources

[INFO] --- maven-resources-plugin:2.5:resources (default-resources) @ ctakes-preprocessor
---
[INFO] [INFO] Nothing to compile - all classes are up to date

[INFO] --- maven-compiler-plugin:2.4:compile (default-compile) @ ctakes-preprocessor ---
[INFO] [debug] execute contextualize
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] Copying 2 resources
[INFO] Copying 3 resources
[INFO] Copying 3 resources

[INFO] --- maven-resources-plugin:2.5:testResources (default-testResources) @ ctakes-preprocessor
---
[INFO] [INFO] Compiling 1 source file to <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-preprocessor/target/test-classes>

[INFO] --- maven-compiler-plugin:2.4:testCompile (default-testCompile) @ ctakes-preprocessor
---
[INFO] [INFO] Surefire report directory: <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-preprocessor/target/surefire-reports>

-------------------------------------------------------
 T E S T S
-------------------------------------------------------

[INFO] --- maven-surefire-plugin:2.12:test (default-test) @ ctakes-preprocessor ---
Running org.apache.ctakes.preprocessor.ClinicalNotePreProcessorTest
log4j: reset attribute= "false".
log4j: Threshold ="null".
log4j: Level value for root is  [INFO].
log4j: root level set to INFO
log4j: Class name: [org.apache.log4j.ConsoleAppender]
log4j: Parsing layout of class: "org.apache.log4j.PatternLayout"
log4j: Setting property [conversionPattern] to [%d{dd MMM yyyy HH:mm:ss} %5p %c{1} - %m%n].
log4j: Adding appender named [consoleAppender] to category [root].
Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.455 sec

Results :

Tests run: 1, Failures: 0, Errors: 0, Skipped: 0

[JENKINS] Recording test results
[INFO]                                                                         
[INFO] ------------------------------------------------------------------------
[INFO] Building Apache cTAKES dictionary lookup 3.1.0-incubating-SNAPSHOT
[INFO] ------------------------------------------------------------------------
[INFO] Deleting <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-dictionary-lookup/target>
[INFO] 
[INFO] --- maven-clean-plugin:2.4.1:clean (default-clean) @ ctakes-dictionary-lookup ---
[INFO] 
[INFO] --- maven-remote-resources-plugin:1.3:process (default) @ ctakes-dictionary-lookup
---
[INFO] [debug] execute contextualize
[INFO] Using 'UTF-8' encoding to copy filtered resources.

[INFO] --- maven-resources-plugin:2.5:resources (default-resources) @ ctakes-dictionary-lookup
---
[INFO] Copying 68 resources
[INFO] Copying 3 resources
[INFO] 
[INFO] --- maven-dependency-plugin:2.6:unpack-dependencies (unpack-dependencies) @ ctakes-dictionary-lookup
---
[INFO] Unpacking /home/jenkins/jenkins-slave/maven-repositories/1/net/sourceforge/ctakesresources/ctakes-resources-umls2011ab/3.1.0/ctakes-resources-umls2011ab-3.1.0.jar
to <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-dictionary-lookup/target/classes>
with includes "" and excludes ""
ERROR: Maven JVM terminated unexpectedly with exit code 143


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