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From "Mattmann, Chris A (3980)" <chris.a.mattm...@jpl.nasa.gov>
Subject Re: ctakes our existing web application
Date Sun, 28 Feb 2016 20:20:25 GMT
Great to hear! Let me know and please feel free to issue pull
requests, and issues, etc.

++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
Chris Mattmann, Ph.D.
Chief Architect
Instrument Software and Science Data Systems Section (398)
NASA Jet Propulsion Laboratory Pasadena, CA 91109 USA
Office: 168-519, Mailstop: 168-527
Email: chris.a.mattmann@nasa.gov
WWW:  http://sunset.usc.edu/~mattmann/
++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
Adjunct Associate Professor, Computer Science Department
University of Southern California, Los Angeles, CA 90089 USA
++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++





-----Original Message-----
From: Ben Yu <ben.yu@pharm.utah.edu>
Reply-To: "dev@ctakes.apache.org" <dev@ctakes.apache.org>
Date: Friday, February 26, 2016 at 12:57 PM
To: "dev@ctakes.apache.org" <dev@ctakes.apache.org>
Subject: RE: ctakes our existing web application

>Oh beautiful! Thank you Chris. Exactly the direction I was going to. I'll
>dive into it ...
>
>Thanks,
>ben
>
>-----Original Message-----
>From: Mattmann, Chris A (3980) [mailto:chris.a.mattmann@jpl.nasa.gov]
>Sent: Friday, February 26, 2016 1:54 PM
>To: dev@ctakes.apache.org
>Subject: Re: ctakes our existing web application
>
>Hey there,
>
>You may want to look at Shangridocs, which provides cTAKES as a REST
>service via Tika:
>
>http://github.com/chrismattmann/shangridocs.git
>
>Happy to help get you started.
>
>Cheers,
>Chris
>
>++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
>Chris Mattmann, Ph.D.
>Chief Architect
>Instrument Software and Science Data Systems Section (398) NASA Jet
>Propulsion Laboratory Pasadena, CA 91109 USA
>Office: 168-519, Mailstop: 168-527
>Email: chris.a.mattmann@nasa.gov
>WWW:  http://sunset.usc.edu/~mattmann/
>++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
>Adjunct Associate Professor, Computer Science Department University of
>Southern California, Los Angeles, CA 90089 USA
>++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
>
>
>
>
>
>-----Original Message-----
>From: Ben Yu <ben.yu@pharm.utah.edu>
>Reply-To: "dev@ctakes.apache.org" <dev@ctakes.apache.org>
>Date: Friday, February 26, 2016 at 12:52 PM
>To: "dev@ctakes.apache.org" <dev@ctakes.apache.org>
>Subject: ctakes our existing web application
>
>>Hi group,
>>We started to look at options to integrate ctakes into our existing web
>>app and started the experiment on the ClinicalPipelineFactory class. I
>>can run it with different engine descriptions and see the outputs
>>without doing any modifications. But when I create my own class in my
>>web app and follow the same logic, I got this error:
>>Exception in thread "main" java.lang.IllegalArgumentException: URI is
>>not hierarchical
>>        at java.io.File.<init>(File.java:418)
>>        at
>>org.apache.ctakes.lvg.ae.LvgAnnotator.createAnnotatorDescription(LvgAnn
>>ota
>>tor.java:565)
>>        at
>>edu.utah.porc.chartreview.ctakes.ClinicalPipelineFactory.getTokenProces
>>sin
>>gPipeline(ClinicalPipelineFactory.java:132)
>>        at
>>edu.utah.porc.chartreview.ctakes.ClinicalPipelineFactory.getDefaultPipe
>>lin
>>e(ClinicalPipelineFactory.java:71)
>>        at
>>edu.utah.porc.chartreview.ctakes.ClinicalPipelineFactory.main(ClinicalP
>>ipe
>>lineFactory.java:244)
>>
>>I am very new to ctakes and I realized there are lots of setups need to
>>be done but not sure if this is related to anything amiss?
>>
>>The web app is a spring/maven project. I've put in all the ctakes
>>dependencies and got over the compiling. Above was a run time error.
>>
>>Thanks in adance for any help,
>>Ben
>>801-587-7751
>>
>

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