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From Phan Hồng Phúc <phanhongphu...@gmail.com>
Subject Re: Clinical Element Model normalization component
Date Wed, 10 Feb 2016 18:55:53 GMT
Thank you,
- Phúc

2016-02-10 21:09 GMT+07:00 Miller, Timothy <
Timothy.Miller@childrens.harvard.edu>:

> Yes it is org.apache.ctakes.typesystem.type.textsem.MedicationMention
> Tim
>
>
> On 02/10/2016 04:20 AM, Phan Hồng Phúc wrote:
> > Hi Tim,
> >
> > Could you provide me the full pakage name of annotation type which
> > recognize the 'tylenol' name?
> > Here are the list of annotation drug type I got, it does not contains
> > MedicationMention:
> >
> >    - org.apache.ctakes.drugner.type.ChunkAnnotation [0]
> >
> >
> >    - org.apache.ctakes.drugner.type.DecimalStrengthAnnotation [0]
> >
> >
> >    - org.apache.ctakes.drugner.type.DosagesAnnotation [0]
> >
> >
> >    - org.apache.ctakes.drugner.type.DrugChangeStatusAnnotation [0]
> >
> >
> >    - org.apache.ctakes.drugner.type.DrugMentionAnnotation [0]
> >
> >
> >    - org.apache.ctakes.drugner.type.DurationAnnotation [0]
> >
> >
> >    - org.apache.ctakes.drugner.type.FormAnnotation [0]
> >
> >
> >    - org.apache.ctakes.drugner.type.FractionStrengthAnnotation [0]
> >
> >
> >    - org.apache.ctakes.drugner.type.FrequencyAnnotation [0]
> >
> >
> >    - org.apache.ctakes.drugner.type.FrequencyUnitAnnotation [0]
> >
> >
> >    - org.apache.ctakes.drugner.type.RangeStrengthAnnotation [0]
> >
> >
> >    - org.apache.ctakes.drugner.type.RouteAnnotation [0]
> >
> >
> >    - org.apache.ctakes.drugner.type.StrengthAnnotation [0]
> >
> >
> >    - org.apache.ctakes.drugner.type.StrengthUnitAnnotation [0]
> >
> >
> >    - org.apache.ctakes.drugner.type.SubSectionAnnotation [0]
> >
> >
> >    - org.apache.ctakes.drugner.type.SuffixStrengthAnnotation [0]
> >
> > Thank you,
> > - Phúc
> >
> >
> > 2016-02-10 2:31 GMT+07:00 Miller, Timothy <
> > Timothy.Miller@childrens.harvard.edu>:
> >
> >> I'm not that familiar with that module but I can confirm that I was able
> >> to replicate your output on this example.
> >> If it helps at all the MedicationMention type does have a span for the
> >> tylenol mention, but obviously doesn't help with all the dosage, route,
> >> etc. information you might want.
> >> Hopefully one of the devs/maintainers of that module will have some
> idea.
> >> Tim
> >>
> >>
> >> On 02/09/2016 02:19 PM, Phan HôÌng Phuìc wrote:
> >>> Hi all,
> >>>
> >>> I try to run the sample to get the drug name.
> >>> Let me describe my steps:
> >>> - runctakesCVD.bat
> >>> - Load AE:
> >>>
> >>
> apache-ctakes-3.2.2\desc\ctakes-clinical-pipeline\desc\analysis_engine\AggregatePlaintextFastUMLSProcessor
> >>> - Add sample text: "*He is taking 500mg of tylenol, twice a day"*
> >>> *- *After run, I see a list of result but all type
> >>> org.apache.ctakes.drugner.type.* are [0]
> >>>
> >>> I think it should contain at least drug name "tylenol" in the result.
> >>>
> >>> Do I miss something?
> >>>
> >>> Thank you,
> >>> - Phúc
> >>>
> >>
>
>

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