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From Ben Yu <ben...@pharm.utah.edu>
Subject RE: ctakes our existing web application
Date Fri, 26 Feb 2016 20:57:12 GMT
Oh beautiful! Thank you Chris. Exactly the direction I was going to. I'll dive into it ...

Thanks,
ben

-----Original Message-----
From: Mattmann, Chris A (3980) [mailto:chris.a.mattmann@jpl.nasa.gov] 
Sent: Friday, February 26, 2016 1:54 PM
To: dev@ctakes.apache.org
Subject: Re: ctakes our existing web application

Hey there,

You may want to look at Shangridocs, which provides cTAKES as a REST service via Tika:

http://github.com/chrismattmann/shangridocs.git

Happy to help get you started.

Cheers,
Chris

++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
Chris Mattmann, Ph.D.
Chief Architect
Instrument Software and Science Data Systems Section (398) NASA Jet Propulsion Laboratory
Pasadena, CA 91109 USA
Office: 168-519, Mailstop: 168-527
Email: chris.a.mattmann@nasa.gov
WWW:  http://sunset.usc.edu/~mattmann/
++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
Adjunct Associate Professor, Computer Science Department University of Southern California,
Los Angeles, CA 90089 USA
++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++





-----Original Message-----
From: Ben Yu <ben.yu@pharm.utah.edu>
Reply-To: "dev@ctakes.apache.org" <dev@ctakes.apache.org>
Date: Friday, February 26, 2016 at 12:52 PM
To: "dev@ctakes.apache.org" <dev@ctakes.apache.org>
Subject: ctakes our existing web application

>Hi group,
>We started to look at options to integrate ctakes into our existing web 
>app and started the experiment on the ClinicalPipelineFactory class. I 
>can run it with different engine descriptions and see the outputs 
>without doing any modifications. But when I create my own class in my 
>web app and follow the same logic, I got this error:
>Exception in thread "main" java.lang.IllegalArgumentException: URI is 
>not hierarchical
>        at java.io.File.<init>(File.java:418)
>        at
>org.apache.ctakes.lvg.ae.LvgAnnotator.createAnnotatorDescription(LvgAnn
>ota
>tor.java:565)
>        at
>edu.utah.porc.chartreview.ctakes.ClinicalPipelineFactory.getTokenProces
>sin
>gPipeline(ClinicalPipelineFactory.java:132)
>        at
>edu.utah.porc.chartreview.ctakes.ClinicalPipelineFactory.getDefaultPipe
>lin
>e(ClinicalPipelineFactory.java:71)
>        at
>edu.utah.porc.chartreview.ctakes.ClinicalPipelineFactory.main(ClinicalP
>ipe
>lineFactory.java:244)
>
>I am very new to ctakes and I realized there are lots of setups need to 
>be done but not sure if this is related to anything amiss?
>
>The web app is a spring/maven project. I've put in all the ctakes 
>dependencies and got over the compiling. Above was a run time error.
>
>Thanks in adance for any help,
>Ben
>801-587-7751
>

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