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From "Miller, Timothy" <Timothy.Mil...@childrens.harvard.edu>
Subject Re: Clinical Element Model normalization component
Date Wed, 10 Feb 2016 14:09:20 GMT
Yes it is org.apache.ctakes.typesystem.type.textsem.MedicationMention
Tim


On 02/10/2016 04:20 AM, Phan Hồng Phúc wrote:
> Hi Tim,
>
> Could you provide me the full pakage name of annotation type which
> recognize the 'tylenol' name?
> Here are the list of annotation drug type I got, it does not contains
> MedicationMention:
>
>    - org.apache.ctakes.drugner.type.ChunkAnnotation [0]
>
>
>    - org.apache.ctakes.drugner.type.DecimalStrengthAnnotation [0]
>
>
>    - org.apache.ctakes.drugner.type.DosagesAnnotation [0]
>
>
>    - org.apache.ctakes.drugner.type.DrugChangeStatusAnnotation [0]
>
>
>    - org.apache.ctakes.drugner.type.DrugMentionAnnotation [0]
>
>
>    - org.apache.ctakes.drugner.type.DurationAnnotation [0]
>
>
>    - org.apache.ctakes.drugner.type.FormAnnotation [0]
>
>
>    - org.apache.ctakes.drugner.type.FractionStrengthAnnotation [0]
>
>
>    - org.apache.ctakes.drugner.type.FrequencyAnnotation [0]
>
>
>    - org.apache.ctakes.drugner.type.FrequencyUnitAnnotation [0]
>
>
>    - org.apache.ctakes.drugner.type.RangeStrengthAnnotation [0]
>
>
>    - org.apache.ctakes.drugner.type.RouteAnnotation [0]
>
>
>    - org.apache.ctakes.drugner.type.StrengthAnnotation [0]
>
>
>    - org.apache.ctakes.drugner.type.StrengthUnitAnnotation [0]
>
>
>    - org.apache.ctakes.drugner.type.SubSectionAnnotation [0]
>
>
>    - org.apache.ctakes.drugner.type.SuffixStrengthAnnotation [0]
>
> Thank you,
> - Phúc
>
>
> 2016-02-10 2:31 GMT+07:00 Miller, Timothy <
> Timothy.Miller@childrens.harvard.edu>:
>
>> I'm not that familiar with that module but I can confirm that I was able
>> to replicate your output on this example.
>> If it helps at all the MedicationMention type does have a span for the
>> tylenol mention, but obviously doesn't help with all the dosage, route,
>> etc. information you might want.
>> Hopefully one of the devs/maintainers of that module will have some idea.
>> Tim
>>
>>
>> On 02/09/2016 02:19 PM, Phan HôÌng Phuìc wrote:
>>> Hi all,
>>>
>>> I try to run the sample to get the drug name.
>>> Let me describe my steps:
>>> - runctakesCVD.bat
>>> - Load AE:
>>>
>> apache-ctakes-3.2.2\desc\ctakes-clinical-pipeline\desc\analysis_engine\AggregatePlaintextFastUMLSProcessor
>>> - Add sample text: "*He is taking 500mg of tylenol, twice a day"*
>>> *- *After run, I see a list of result but all type
>>> org.apache.ctakes.drugner.type.* are [0]
>>>
>>> I think it should contain at least drug name "tylenol" in the result.
>>>
>>> Do I miss something?
>>>
>>> Thank you,
>>> - Phúc
>>>
>>

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