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From Peter Klügl <peter.klu...@averbis.com>
Subject Re: Combining Knowledge- and Data-driven Methods for De-identification of Clinical Narratives
Date Mon, 02 Nov 2015 08:56:52 GMT
Hi,

I just wanted to ask about the current status. I assume that the source
is not yet in svn, right? Let me know when I can do something (in case I
miss some mail on this list).

Best,

Peter

Am 13.10.2015 um 21:17 schrieb Pei Chen:
> Thanks Azad.
> I submitted a Jira to infra to help us do the import (that way we will try
> and preserve the commit history).
> In the meantime, would you mind filling out the ICLA[1].
>
> [Reminder: Let's keep it in sandbox and not release it until all of the 3rd
> party dependencies licenses have been verified.]
>
> [1] http://www.apache.org/licenses/#clas
>
> Thanks,
> Pei
>
>     Pei Chen
> Wired Informatics <http://www.wiredinformatics.com>
> 265 Franklin St Ste 1702
> Boston, MA 02110
> tel: (617) 433-7544
> Pei.Chen@wiredinformatics.com
>
> On Sun, Oct 11, 2015 at 3:51 PM, Azad Dehghan <azad.dehghan@gmail.com>
> wrote:
>
>> 1: Yes. Sorted.
>> 3: Code attached to the Jira.
>>
>> Azad
>>
>> On 8 October 2015 at 20:03, Chen, Pei <Pei.Chen@childrens.harvard.edu>
>> wrote:
>>
>>> This is great news!
>>>> What is the current status and procedure? Is there an explicit
>>> contribution to cTAKES? Is there an ICLA? What about the license of the
>>> sourceforge project?
>>> Jira has been opened to track this:
>>> https://issues.apache.org/jira/browse/CTAKES-384
>>>
>>> 1) Azad, would you be willing to switch licenses?  I believe it's
>>> currently GNU3 -> ASL 2.0?
>>> 2) Create a project/module in cTAKES sandbox for this
>>> 3) Export/Import sourceforge and attach the code to the Jira initially.
>>> One of the current cTAKES committers can commit it to the repo (Until
>> folks
>>> can commit directly to the ctakes repo directly going forward.)
>>>
>>> -----Original Message-----
>>> From: Peter Klügl [mailto:peter.kluegl@averbis.com]
>>> Sent: Thursday, October 08, 2015 8:06 AM
>>> To: dev@ctakes.apache.org
>>> Subject: Re: Combining Knowledge- and Data-driven Methods for
>>> De-identification of Clinical Narratives
>>>
>>> Hi,
>>>
>>> I can offer my help here if required.
>>>
>>> I have experience in translating JAPE rules to UIMA Ruta and already
>>> worked with clinical notes, e.g., also concerning deidentification.
>>>
>>> The problem is that I can only invest a few hours in the next two weeks.
>>> I will have more time next month or even more next year.
>>>
>>> What is the current status and procedure? Is there an explicit
>>> contribution to cTAKES? Is there an ICLA? What about the license of the
>>> sourceforge project?
>>>
>>> Best,
>>>
>>> Peter
>>>
>>> Am 01.10.2015 um 16:20 schrieb Pei Chen:
>>>> Hi Azad,
>>>> This is awesome news.  Thanks for adding in the code that was
>>>> referenced by the paper.  I'll create a Jira to track we need to port
>>>> it over to UIMA/Ruta.
>>>>
>>>> In the meantime, the link is at:
>>>> https://urldefense.proofpoint.com/v2/url?u=http-3A__sourceforge.net_p_
>>>>
>> clinical-2Ddeid_code_ci_master_tree_&d=BQICaQ&c=qS4goWBT7poplM69zy_3xhKwEW14JZMSdioCoppxeFU&r=huK2MFkj300qccT8OSuuoYhy_xEYujfPwiAxhPVz5WY&m=yjhqco4EH0XrR798kbkzfYcFQ8z8MR9UF8mMRSjKTH0&s=_k7AbwzkVrRwTrNC3LArZ5hQ5Q47eh06KCDla7UBugY&e=
>>> for those who may be interested in helping out...
>>>> --Pei
>>>>
>>>> Hello Pei,
>>>>
>>>> I hope all is well.
>>>>
>>>> I have now uploaded the source code for cDeid
>>>> (https://urldefense.proofpoint.com/v2/url?u=http-3A__sourceforge.net_p
>>>> _clinical-2Ddeid_code_ci_master_tree_&d=BQICaQ&c=qS4goWBT7poplM69zy_3x
>>>> hKwEW14JZMSdioCoppxeFU&r=huK2MFkj300qccT8OSuuoYhy_xEYujfPwiAxhPVz5WY&m
>>>>
>> =yjhqco4EH0XrR798kbkzfYcFQ8z8MR9UF8mMRSjKTH0&s=_k7AbwzkVrRwTrNC3LArZ5hQ5Q47eh06KCDla7UBugY&e=
>>> ) ; I have tried to make the code as portable and modular as possible
>> with
>>> some trade-off for performance. This should help with porting the code to
>>> cTAKES/UIMA.
>>>> Once you let the community know I will try to get involved to help
>>>> with translating JAPE to RUTA, etc.
>>>>
>>>> Best,
>>>> Azad
>>>


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