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From Pei Chen <pei.c...@wiredinformatics.com>
Subject Re: Combining Knowledge- and Data-driven Methods for De-identification of Clinical Narratives
Date Tue, 13 Oct 2015 19:17:19 GMT
Thanks Azad.
I submitted a Jira to infra to help us do the import (that way we will try
and preserve the commit history).
In the meantime, would you mind filling out the ICLA[1].

[Reminder: Let's keep it in sandbox and not release it until all of the 3rd
party dependencies licenses have been verified.]

[1] http://www.apache.org/licenses/#clas

Thanks,
Pei

    Pei Chen
Wired Informatics <http://www.wiredinformatics.com>
265 Franklin St Ste 1702
Boston, MA 02110
tel: (617) 433-7544
Pei.Chen@wiredinformatics.com

On Sun, Oct 11, 2015 at 3:51 PM, Azad Dehghan <azad.dehghan@gmail.com>
wrote:

> 1: Yes. Sorted.
> 3: Code attached to the Jira.
>
> Azad
>
> On 8 October 2015 at 20:03, Chen, Pei <Pei.Chen@childrens.harvard.edu>
> wrote:
>
> > This is great news!
> > > What is the current status and procedure? Is there an explicit
> > contribution to cTAKES? Is there an ICLA? What about the license of the
> > sourceforge project?
> > Jira has been opened to track this:
> > https://issues.apache.org/jira/browse/CTAKES-384
> >
> > 1) Azad, would you be willing to switch licenses?  I believe it's
> > currently GNU3 -> ASL 2.0?
> > 2) Create a project/module in cTAKES sandbox for this
> > 3) Export/Import sourceforge and attach the code to the Jira initially.
> > One of the current cTAKES committers can commit it to the repo (Until
> folks
> > can commit directly to the ctakes repo directly going forward.)
> >
> > -----Original Message-----
> > From: Peter Kl├╝gl [mailto:peter.kluegl@averbis.com]
> > Sent: Thursday, October 08, 2015 8:06 AM
> > To: dev@ctakes.apache.org
> > Subject: Re: Combining Knowledge- and Data-driven Methods for
> > De-identification of Clinical Narratives
> >
> > Hi,
> >
> > I can offer my help here if required.
> >
> > I have experience in translating JAPE rules to UIMA Ruta and already
> > worked with clinical notes, e.g., also concerning deidentification.
> >
> > The problem is that I can only invest a few hours in the next two weeks.
> > I will have more time next month or even more next year.
> >
> > What is the current status and procedure? Is there an explicit
> > contribution to cTAKES? Is there an ICLA? What about the license of the
> > sourceforge project?
> >
> > Best,
> >
> > Peter
> >
> > Am 01.10.2015 um 16:20 schrieb Pei Chen:
> > > Hi Azad,
> > > This is awesome news.  Thanks for adding in the code that was
> > > referenced by the paper.  I'll create a Jira to track we need to port
> > > it over to UIMA/Ruta.
> > >
> > > In the meantime, the link is at:
> > > https://urldefense.proofpoint.com/v2/url?u=http-3A__sourceforge.net_p_
> > >
> >
> clinical-2Ddeid_code_ci_master_tree_&d=BQICaQ&c=qS4goWBT7poplM69zy_3xhKwEW14JZMSdioCoppxeFU&r=huK2MFkj300qccT8OSuuoYhy_xEYujfPwiAxhPVz5WY&m=yjhqco4EH0XrR798kbkzfYcFQ8z8MR9UF8mMRSjKTH0&s=_k7AbwzkVrRwTrNC3LArZ5hQ5Q47eh06KCDla7UBugY&e=
> > for those who may be interested in helping out...
> > >
> > > --Pei
> > >
> > > Hello Pei,
> > >
> > > I hope all is well.
> > >
> > > I have now uploaded the source code for cDeid
> > > (https://urldefense.proofpoint.com/v2/url?u=http-3A__sourceforge.net_p
> > > _clinical-2Ddeid_code_ci_master_tree_&d=BQICaQ&c=qS4goWBT7poplM69zy_3x
> > > hKwEW14JZMSdioCoppxeFU&r=huK2MFkj300qccT8OSuuoYhy_xEYujfPwiAxhPVz5WY&m
> > >
> >
> =yjhqco4EH0XrR798kbkzfYcFQ8z8MR9UF8mMRSjKTH0&s=_k7AbwzkVrRwTrNC3LArZ5hQ5Q47eh06KCDla7UBugY&e=
> > ) ; I have tried to make the code as portable and modular as possible
> with
> > some trade-off for performance. This should help with porting the code to
> > cTAKES/UIMA.
> > >
> > > Once you let the community know I will try to get involved to help
> > > with translating JAPE to RUTA, etc.
> > >
> > > Best,
> > > Azad
> >
> >
>

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