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From Peter Klügl <peter.klu...@averbis.com>
Subject Re: Combining Knowledge- and Data-driven Methods for De-identification of Clinical Narratives
Date Fri, 09 Oct 2015 13:32:02 GMT
Hi,

do you have full IP for all files in the sourceforge project? ... e.g.,
the files in GATE/plugins/ANNIE/ or GATE/plugins/ANNIE/resources/gazetteer/

Best,

Peter

Am 08.10.2015 um 21:44 schrieb Azad Dehghan:
> Hi Pei,
>
> The licence has now been updated.
>
> @Andy the licencing is up to the IP holder.
>
> Cheers,
> Azad
>
> On 8 October 2015 at 20:03, Chen, Pei <Pei.Chen@childrens.harvard.edu>
> wrote:
>
>> This is great news!
>>> What is the current status and procedure? Is there an explicit
>> contribution to cTAKES? Is there an ICLA? What about the license of the
>> sourceforge project?
>> Jira has been opened to track this:
>> https://issues.apache.org/jira/browse/CTAKES-384
>>
>> 1) Azad, would you be willing to switch licenses?  I believe it's
>> currently GNU3 -> ASL 2.0?
>> 2) Create a project/module in cTAKES sandbox for this
>> 3) Export/Import sourceforge and attach the code to the Jira initially.
>> One of the current cTAKES committers can commit it to the repo (Until folks
>> can commit directly to the ctakes repo directly going forward.)
>>
>> -----Original Message-----
>> From: Peter Klügl [mailto:peter.kluegl@averbis.com]
>> Sent: Thursday, October 08, 2015 8:06 AM
>> To: dev@ctakes.apache.org
>> Subject: Re: Combining Knowledge- and Data-driven Methods for
>> De-identification of Clinical Narratives
>>
>> Hi,
>>
>> I can offer my help here if required.
>>
>> I have experience in translating JAPE rules to UIMA Ruta and already
>> worked with clinical notes, e.g., also concerning deidentification.
>>
>> The problem is that I can only invest a few hours in the next two weeks.
>> I will have more time next month or even more next year.
>>
>> What is the current status and procedure? Is there an explicit
>> contribution to cTAKES? Is there an ICLA? What about the license of the
>> sourceforge project?
>>
>> Best,
>>
>> Peter
>>
>> Am 01.10.2015 um 16:20 schrieb Pei Chen:
>>> Hi Azad,
>>> This is awesome news.  Thanks for adding in the code that was
>>> referenced by the paper.  I'll create a Jira to track we need to port
>>> it over to UIMA/Ruta.
>>>
>>> In the meantime, the link is at:
>>> https://urldefense.proofpoint.com/v2/url?u=http-3A__sourceforge.net_p_
>>>
>> clinical-2Ddeid_code_ci_master_tree_&d=BQICaQ&c=qS4goWBT7poplM69zy_3xhKwEW14JZMSdioCoppxeFU&r=huK2MFkj300qccT8OSuuoYhy_xEYujfPwiAxhPVz5WY&m=yjhqco4EH0XrR798kbkzfYcFQ8z8MR9UF8mMRSjKTH0&s=_k7AbwzkVrRwTrNC3LArZ5hQ5Q47eh06KCDla7UBugY&e=
>> for those who may be interested in helping out...
>>> --Pei
>>>
>>> Hello Pei,
>>>
>>> I hope all is well.
>>>
>>> I have now uploaded the source code for cDeid
>>> (https://urldefense.proofpoint.com/v2/url?u=http-3A__sourceforge.net_p
>>> _clinical-2Ddeid_code_ci_master_tree_&d=BQICaQ&c=qS4goWBT7poplM69zy_3x
>>> hKwEW14JZMSdioCoppxeFU&r=huK2MFkj300qccT8OSuuoYhy_xEYujfPwiAxhPVz5WY&m
>>>
>> =yjhqco4EH0XrR798kbkzfYcFQ8z8MR9UF8mMRSjKTH0&s=_k7AbwzkVrRwTrNC3LArZ5hQ5Q47eh06KCDla7UBugY&e=
>> ) ; I have tried to make the code as portable and modular as possible with
>> some trade-off for performance. This should help with porting the code to
>> cTAKES/UIMA.
>>> Once you let the community know I will try to get involved to help
>>> with translating JAPE to RUTA, etc.
>>>
>>> Best,
>>> Azad
>>


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