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From: "Geise, Brandon D." <bdgeise@geisinger.edu>
To: "dev@ctakes.apache.org" <dev@ctakes.apache.org>
Subject: RE: Fast Dictionary Update
Thread-Topic: Fast Dictionary Update
Thread-Index: AdDwpEDakN4hdJN4TiCY7ydXmSXEcgAAvDPQAAAWVDAAAKHT4AABUIQQ
Date: Wed, 16 Sep 2015 18:42:19 +0000
Message-ID: <33605790b50c4a6e819d3eb44a39c722@LOFEXMBX207W12V.geisinger.edu>
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Thanks Sean, much appreciated.  To clarify the example below would create t=
he dictionary for use for the rare word approach?

Thanks,
Brandon

-----Original Message-----
From: Finan, Sean [mailto:Sean.Finan@childrens.harvard.edu]=20
Sent: Wednesday, September 16, 2015 2:16 PM
To: dev@ctakes.apache.org
Subject: RE: Fast Dictionary Update

Hi Brandon,

I just checked in a bin/dictionarytool.zip It should have everything that y=
ou need (.jar, lib/, data/).
java -cp dictionarytool.jar;lib/* org.apache.ctakes.dictionarytool.Dictiona=
ryCreator2 [args] Should do the trick.

To recreate a 2015 version of the current ctakes dictionary, the arguments =
are:=20
-umls my/path/to/2015AA/META -fd ./data/tiny -atui ./data/tiny/CtakesAnatTu=
is.txt -tui ./data/tiny/CtakesSnomedTuis.txt -db jdbc:hsqldb:file:my/path/t=
o/snorx2015 -tbl CUI_TERMS

Create my/path/to/snorx2015 by copying resources/memdbtemplate/ctakesumls.p=
roperties to my/path/to/snorx2015.properties   - there is a resources/READM=
E about this.

Before populating a DB, I usually do a trial run first, writing to a flat f=
ile.  Replace "-db ... -tbl ..." with "-ol my/path/to/testout.bsv"


Sean

-----Original Message-----
From: Geise, Brandon D. [mailto:bdgeise@geisinger.edu]
Sent: Wednesday, September 16, 2015 1:49 PM
To: dev@ctakes.apache.org
Subject: RE: Fast Dictionary Update

Hi Sean,

That'd be great.

I think I'm building it incorrectly because after I build the jar and try t=
o run specifying DictionaryCreator2 as the main class it says it can't find=
 it.  I'm not too familiar with Java and building projects/jars so it could=
 be my ignorance causing the problem.

Thanks,
Brandon

-----Original Message-----
From: Finan, Sean [mailto:Sean.Finan@childrens.harvard.edu]
Sent: Wednesday, September 16, 2015 1:45 PM
To: dev@ctakes.apache.org
Subject: RE: Fast Dictionary Update

Hi Brandon,

I can send you a jar or commit one pre-built.  What goes wrong when you try=
 to build the tool?

Sean

-----Original Message-----
From: Geise, Brandon D. [mailto:bdgeise@geisinger.edu]
Sent: Wednesday, September 16, 2015 1:23 PM
To: 'dev@ctakes.apache.org'
Subject: Fast Dictionary Update

Does someone have the DictionaryTool jar available?  I'm having trouble cre=
ating the jar file from the project and would like to be able to create an =
updated UMLS fast dictionary for 2015.

Thanks,
Brandon


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