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From andy mcmurry <mcmurry.a...@gmail.com>
Subject Re: [cancer-informatics] Fwd: BD2K Coordination Center Solicits Hackathon Proposals
Date Thu, 24 Sep 2015 19:24:50 GMT
Awesome! Britt and I used ctakes to combine public and private data in this
paper

"*Improved **de-identification** of physician notes through integrative
modeling of both public and private medical text*"

http://www.biomedcentral.com/1472-6947/13/112
On Sep 24, 2015 11:02 AM, "Mattmann, Chris A (3980)" <
chris.a.mattmann@jpl.nasa.gov> wrote:

> Hey Andy,
>
> Sure, the clinical use case is to combine public and private data.
> So take a company’s private clinical data, and research, and then
> map it e.g.,to public research publications and connect the two.
>
> So the tool I’m talking about is Shangridocs:
>
> http://github.com/chrismattmann/shangridocs/
>
> Would love to chat if people are interested in doing some funding
> proposal related to this. I see a big need for it across multiple
> domains.
>
> Cheers,
> Chris
>
> ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
> Chris Mattmann, Ph.D.
> Chief Architect
> Instrument Software and Science Data Systems Section (398)
> NASA Jet Propulsion Laboratory Pasadena, CA 91109 USA
> Office: 168-519, Mailstop: 168-527
> Email: chris.a.mattmann@nasa.gov
> WWW:  http://sunset.usc.edu/~mattmann/
> ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
> Adjunct Associate Professor, Computer Science Department
> University of Southern California, Los Angeles, CA 90089 USA
> ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
>
>
>
>
>
> -----Original Message-----
> From: andy mcmurry <mcmurry.andy@gmail.com>
> Reply-To: "dev@ctakes.apache.org" <dev@ctakes.apache.org>
> Date: Saturday, September 19, 2015 at 8:44 PM
> To: "dev@ctakes.apache.org" <dev@ctakes.apache.org>
> Cc: "user@ctakes.apache.org" <user@ctakes.apache.org>
> Subject: Re: [cancer-informatics] Fwd: BD2K Coordination Center Solicits
> Hackathon Proposals
>
> >Chris: sounds interesting. could you share some of your clinical use
> >cases ?
> >
> >On Sep 19, 2015 9:27 AM, "Mattmann, Chris A (3980)" <
> >chris.a.mattmann@jpl.nasa.gov> wrote:
> >>
> >> Hey Folks,
> >>
> >> If anyone wants to discuss how JPL can contribute to a BD2K
> >> proposal or if someone is already leading it, I would definitely
> >> be interested in contributing. We have been combining Tika, cTAKES,
> >> and other software (Spark, OODT) into a solution we call “Shangridocs”
> >> which could be quite compelling here.
> >>
> >> Please feel free to contact me off-line and would love to discuss.
> >>
> >> Cheers,
> >> Chris
> >>
> >> ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
> >> Chris Mattmann, Ph.D.
> >> Chief Architect
> >> Instrument Software and Science Data Systems Section (398)
> >> NASA Jet Propulsion Laboratory Pasadena, CA 91109 USA
> >> Office: 168-519, Mailstop: 168-527
> >> Email: chris.a.mattmann@nasa.gov
> >> WWW:  http://sunset.usc.edu/~mattmann/
> >> ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
> >> Adjunct Associate Professor, Computer Science Department
> >> University of Southern California, Los Angeles, CA 90089 USA
> >> ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
> >>
> >>
> >>
> >>
> >>
> >> -----Original Message-----
> >> From: andy mcmurry <mcmurry.andy@gmail.com>
> >> Reply-To: "user@ctakes.apache.org" <user@ctakes.apache.org>
> >> Date: Friday, September 18, 2015 at 4:24 PM
> >> To: "dev@ctakes.apache.org" <dev@ctakes.apache.org>
> >> Cc: "user@ctakes.apache.org" <user@ctakes.apache.org>
> >> Subject: Re: [cancer-informatics] Fwd: BD2K Coordination Center Solicits
> >> Hackathon Proposals
> >>
> >> >+1 , I support the idea of cTAKES as an intermediate step for other
> >> >annotation sources, data "mash up".
> >> >Phenotypes -- Genes, etc.
> >> >
> >> >
> >> >On Thu, Sep 17, 2015 at 2:52 PM, Wilson, Brian
> >> ><BWilson@tuftsmedicalcenter.org> wrote:
> >> >
> >> >
> >> >> > Food for thought :)
> >> >
> >> >> >
> >> >> > The Big Data to Knowledge Coordination Center (BD2KCC) is
> >>announcing
> >> >> > a call for  hackathon event proposals related to biomedical big
> >>data
> >> >> > science. The BD2KCC is part of the National Institutes of Health
> >> >> > (NIH)’s Big Data to Knowledge (BD2K) program, which is committed
to
> >> >> > fostering consortium activities and collaborations among the
> >> >> > nationwide BD2K investigator teams. The current request for
> >> >> > applications aims to advance the mission of BD2K by inviting
> >> >> > proposals to host public hackathon events that will harness broad
> >> >> > expertise for the development and application of biomedical big
> >>data
> >> >> > software tools. Applications for the first round of funding are
due
> >> >> > October 15th, 2015. More information about this opportunity can
be
> >> >> > found at:
> >> >http://bd2kcc.org/files/hackathons.pdf
> >> ><http://bd2kcc.org/files/hackathons.pdf>.
> >> >>
> >> >>
> >> >>
> >> >
> >> >The information in this e-mail is intended only for the person to whom
> >>it
> >> >is addressed. If you believe this e-mail was sent to you in error and
> >>the
> >> >e-mail contains patient information, please contact the Tufts Medical
> >> >Center HIPAA Hotline at
> >> >(617) 636-4422 <tel:%28617%29%20636-4422>. If the e-mail was sent
to
> >>you
> >> >in error but does not contain patient information, please contact the
> >> >sender and properly dispose of the e-mail.
> >> >
> >> >
> >> >
> >> >
> >> >
> >>
>
>

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