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From "Finan, Sean" <Sean.Fi...@childrens.harvard.edu>
Subject RE: Invalid UMLS License
Date Mon, 27 Jul 2015 16:05:58 GMT
Hi Justin,

Check your specification of username and password.  It thinks that your username is the entire
phrase: " zhangjustin -Dctakes.umlspw=[removed]"

I think that the problem might be the capital D in -Dctakes.umlspw 

Sean

-----Original Message-----
From: Justin Zhang [mailto:justinzhang.xl@gmail.com] 
Sent: Monday, July 27, 2015 12:02 PM
To: dev@ctakes.apache.org
Subject: Re: Invalid UMLS License

Hello Sean,

I checked out CTAKES snapshot (last week) in Eclipse following development installation guide
https://urldefense.proofpoint.com/v2/url?u=https-3A__cwiki.apache.org_confluence_display_CTAKES_cTAKES-2B3.0-2BDeveloper-2BInstall-2BGuide&d=BQIFaQ&c=qS4goWBT7poplM69zy_3xhKwEW14JZMSdioCoppxeFU&r=fs67GvlGZstTpyIisCYNYmQCP6r0bcpKGd4f7d4gTao&m=lbEdKoY0da48z2A6Xnehe0DtLHhe9WSu6whMx1DpeS8&s=KLhbpi0HBety6lMXLxgIgwiI2Zc9eQLMH6qAIMj8AiQ&e=


I launched UIMA_CVD from project "cakes-clinical-pipeline", and loaded AE AggregatePlaintextFastUMLSProcessor.xml

I still got "ERROR UmlsUserApprover". With my account id and password, I could login from
web (the following link)


https://urldefense.proofpoint.com/v2/url?u=https-3A__utslogin.nlm.nih.gov_cas_login-3Fservice-3Dhttps-253A-252F-252Futs.nlm.nih.gov-253A443-252F-252Fj-5Fspring-5Fcas-5Fsecurity-5Fcheck-253Bjsessionid-253D366912C5528E774DD06D6A87A1B77342&d=BQIFaQ&c=qS4goWBT7poplM69zy_3xhKwEW14JZMSdioCoppxeFU&r=fs67GvlGZstTpyIisCYNYmQCP6r0bcpKGd4f7d4gTao&m=lbEdKoY0da48z2A6Xnehe0DtLHhe9WSu6whMx1DpeS8&s=5jtS1Q5YJij5m44pytmtX79CPqptWKf9jB87Ew7y0hc&e=


The error message was copied below. Any suggestions? Thanks

log4j: reset attribute= "false".

log4j: Threshold ="null".

log4j: Retreiving an instance of org.apache.log4j.Logger.

log4j: Setting [ProgressAppender] additivity to [false].

log4j: Level value for ProgressAppender is  [INFO].

log4j: ProgressAppender level set to INFO

log4j: Class name: [org.apache.log4j.ConsoleAppender]

log4j: Parsing layout of class: "org.apache.log4j.PatternLayout"

log4j: Setting property [conversionPattern] to [%m].

log4j: Adding appender named [noEolAppender] to category [ProgressAppender].

log4j: Retreiving an instance of org.apache.log4j.Logger.

log4j: Setting [ProgressDone] additivity to [false].

log4j: Level value for ProgressDone is  [INFO].

log4j: ProgressDone level set to INFO

log4j: Class name: [org.apache.log4j.ConsoleAppender]

log4j: Parsing layout of class: "org.apache.log4j.PatternLayout"

log4j: Setting property [conversionPattern] to [%m%n].

log4j: Adding appender named [eolAppender] to category [ProgressDone].

log4j: Level value for root is  [INFO].

log4j: root level set to INFO

log4j: Class name: [org.apache.log4j.ConsoleAppender]

log4j: Parsing layout of class: "org.apache.log4j.PatternLayout"

log4j: Setting property [conversionPattern] to [%d{dd MMM yyyy HH:mm:ss} %5p %c{1} - %m%n].

log4j: Adding appender named [consoleAppender] to category [root].

27 Jul 2015 10:39:05  INFO LvgCmdApiResourceImpl - Loading NLM Norm and Lvg with config file
= /Users/justin/App/eclipse_mars/workspace_eclipse_mars/ctakes/ctakes-lvg-res/target/classes/org/apache/ctakes/lvg/data/config/lvg.properties

27 Jul 2015 10:39:05  INFO LvgCmdApiResourceImpl -   config file absolute
path =
/Users/justin/App/eclipse_mars/workspace_eclipse_mars/ctakes/ctakes-lvg-res/target/classes/org/apache/ctakes/lvg/data/config/lvg.properties

27 Jul 2015 10:39:05  INFO LvgCmdApiResourceImpl - cwd = /Users/justin/App/eclipse_mars/workspace_eclipse_mars/ctakes/ctakes-clinical-pipeline

27 Jul 2015 10:39:05  INFO LvgCmdApiResourceImpl - cd /Users/justin/App/eclipse_mars/workspace_eclipse_mars/ctakes/ctakes-lvg-res/target/classes/org/apache/ctakes/lvg/

27 Jul 2015 10:39:05  INFO LvgCmdApiResourceImpl - cd /Users/justin/App/eclipse_mars/workspace_eclipse_mars/ctakes/ctakes-clinical-pipeline

27 Jul 2015 10:39:06  INFO ClearNLPDependencyParserAE - using Morphy analysis? true

Loading configuration.

Loading feature templates.

Loading lexica.

Loading model:

........................................................................................

27 Jul 2015 10:39:15  INFO Chunker - Chunker model file:
org/apache/ctakes/chunker/models/chunker-model.zip

27 Jul 2015 10:39:17  INFO ContextDependentTokenizerAnnotator - Finite state machines loaded.

27 Jul 2015 10:39:17  INFO ConstituencyParser - Initializing parser...

27 Jul 2015 10:39:19  INFO ContextAnnotator - SCOPE ORDER: [1, 3]

27 Jul 2015 10:39:19  INFO NegationContextAnalyzer - initBoundaryData() called for ContextInitializer

27 Jul 2015 10:39:20  INFO DrugMentionAnnotator - Finite state machines loaded.

27 Jul 2015 10:39:20  INFO POSTagger - POS tagger model file:
org/apache/ctakes/postagger/models/mayo-pos.zip

27 Jul 2015 10:39:20  INFO AbstractJCasTermAnnotator - Using dictionary lookup window type:
org.apache.ctakes.typesystem.type.textspan.Sentence

27 Jul 2015 10:39:20  INFO AbstractJCasTermAnnotator - Exclusion tagset
loaded: CC CD DT EX IN LS MD PDT POS PP PP$ PRP PRP$ RP TO VB VBD VBG VBN VBP VBZ WDT WP WPS
WRB

27 Jul 2015 10:39:20  INFO AbstractJCasTermAnnotator - Using minimum term text span: 3

27 Jul 2015 10:39:21  INFO DictionaryDescriptorParser - Parsing dictionary
specifications:
/Users/justin/App/eclipse_mars/workspace_eclipse_mars/ctakes/ctakes-dictionary-lookup-fast-res/target/classes/org/apache/ctakes/dictionary/lookup/fast/cTakesHsql.xml

27 Jul 2015 10:39:21  INFO UmlsUserApprover - Checking UMLS Account at https://urldefense.proofpoint.com/v2/url?u=https-3A__uts-2Dws.nlm.nih.gov_restful_isValidUMLSUser&d=BQIFaQ&c=qS4goWBT7poplM69zy_3xhKwEW14JZMSdioCoppxeFU&r=fs67GvlGZstTpyIisCYNYmQCP6r0bcpKGd4f7d4gTao&m=lbEdKoY0da48z2A6Xnehe0DtLHhe9WSu6whMx1DpeS8&s=2Mg1-XF2l5zWbSeV2-H2my6WBXiFuqcHNXpRSy7u-gY&e=
 for user zhangjustin -Dctakes.umlspw=20aug10! -Djava.util.logging.config.file=/Logger.properties:

.

27 Jul 2015 10:39:21 ERROR UmlsUserApprover -   UMLS Account at
https://urldefense.proofpoint.com/v2/url?u=https-3A__uts-2Dws.nlm.nih.gov_restful_isValidUMLSUser&d=BQIFaQ&c=qS4goWBT7poplM69zy_3xhKwEW14JZMSdioCoppxeFU&r=fs67GvlGZstTpyIisCYNYmQCP6r0bcpKGd4f7d4gTao&m=lbEdKoY0da48z2A6Xnehe0DtLHhe9WSu6whMx1DpeS8&s=2Mg1-XF2l5zWbSeV2-H2my6WBXiFuqcHNXpRSy7u-gY&e=
 is not valid for user <myuseraccount> -Dctakes.umlspw=******** -Djava.util.logging.config.file=/Logger.properties
with CHANGEME


On Mon, Jul 27, 2015 at 8:32 AM, Finan, Sean < Sean.Finan@childrens.harvard.edu> wrote:

> Hi Justin,
>
> The UMLS licensing issue has been resolved:
> https://urldefense.proofpoint.com/v2/url?u=https-3A__issues.apache.org
> _jira_browse_CTAKES-2D359&d=BQIFaQ&c=qS4goWBT7poplM69zy_3xhKwEW14JZMSd
> ioCoppxeFU&r=fs67GvlGZstTpyIisCYNYmQCP6r0bcpKGd4f7d4gTao&m=lbEdKoY0da4
> 8z2A6Xnehe0DtLHhe9WSu6whMx1DpeS8&s=Z5hOF2WyiKrmPoizIO9D9lYAMHqRyMSHsKl
> gxXunPY4&e=
>
> Any version built after May 12th 2015 should have the fix.
>
> Sean
>
>
> -----Original Message-----
> From: Justin Zhang [mailto:justinzhang.xl@gmail.com]
> Sent: Sunday, July 26, 2015 9:21 AM
> To: user@ctakes.apache.org; dev@ctakes.apache.org
> Subject: Invalid UMLS License
>
> Hello Everyone and Sir Miller, Timothy
>
> Has the UMLS license issue discussed in the following link be resolved?
>
>
> https://urldefense.proofpoint.com/v2/url?u=http-3A__mail-2Darchives.ap
> ache.org_mod-5Fmbox_ctakes-2Duser_201505.mbox_-253CE084D8EFE2B03A408B3
> 24458C5212E945305DD21-40CHEXMBX3B.CHBOSTON.ORG-253E&d=BQIBaQ&c=qS4goWB
> T7poplM69zy_3xhKwEW14JZMSdioCoppxeFU&r=fs67GvlGZstTpyIisCYNYmQCP6r0bcp
> KGd4f7d4gTao&m=3aIq21IOPN1iyBDOER6I0oZo91kp0ZvFpxVqopVyOjM&s=pwjK4pNoP
> HvoDDd9sK40bk0-_SOQ7MGiA1TNMLplMwI&e=
>
> --
>
> Thanks,
>
> Justin
>



--
Justin
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