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From "Chen, Pei" <Pei.C...@childrens.harvard.edu>
Subject RE: [VOTE] Release Apache cTAKES 3.2.2 (rc2)
Date Mon, 18 May 2015 22:08:45 GMT
Kim,
Thanks for helping with the testing.  Just curious- which mvn cmd did you use?
All of the unit tests pass for me when I do a:
$ svn co https://svn.apache.org/repos/asf/ctakes/tags/ctakes-3.2.2-rc2
$mvn clean compile test

-------------------------------------------------------
T E S T S
-------------------------------------------------------

Results :

Tests run: 0, Failures: 0, Errors: 0, Skipped: 0

[INFO] ------------------------------------------------------------------------
[INFO] Reactor Summary:
[INFO]
[INFO] Apache cTAKES ..................................... SUCCESS [4.605s]
[INFO] Apache cTAKES common type system .................. SUCCESS [1:56.910s]
[INFO] Apache cTAKES utils ............................... SUCCESS [22.507s]
[INFO] Apache cTAKES Resources core ...................... SUCCESS [9.048s]
[INFO] Apache cTAKES core ................................ SUCCESS [2:26.837s]
[INFO] Apache cTAKES Resources pos-tagger ................ SUCCESS [14.414s]
[INFO] Apache cTAKES part-of-speech tagger ............... SUCCESS [1:12.710s]
[INFO] Apache cTAKES Resources ctakes-chunker-res ........ SUCCESS [15.176s]
[INFO] Apache cTAKES chunker ............................. SUCCESS [44.090s]
[INFO] Apache cTAKES document preprocessor ............... SUCCESS [36.772s]
[INFO] Apache cTAKES Resources dictionary-lookup ......... SUCCESS [19:49.802s]
[INFO] Apache cTAKES dictionary lookup ................... SUCCESS [51.745s]
[INFO] Apache cTAKES context dependent tokenizer ......... SUCCESS [22.713s]
[INFO] Apache cTAKES Resources lvg ....................... SUCCESS [33:32.726s]
[INFO] Apache cTAKES LVG lexical tools ................... SUCCESS [25.485s]
[INFO] Apache cTAKES Resources ne-contexts ............... SUCCESS [4.875s]
[INFO] Apache cTAKES named entity contexts ............... SUCCESS [52.822s]
[INFO] Apache cTAKES Resources constituency-parser ....... SUCCESS [31.723s]
[INFO] Apache cTAKES Constituency Parser ................. SUCCESS [49.930s]
[INFO] Apache cTAKES Resources coreference ............... SUCCESS [40.765s]
[INFO] Apache cTAKES Resources relation-extractor ........ SUCCESS [6.843s]
[INFO] Apache cTAKES Resources dependency-parser ......... SUCCESS [3:38.324s]
[INFO] Apache cTAKES Dependency Parser ................... SUCCESS [2:55.101s]
[INFO] Apache cTAKES Relation Extractor .................. SUCCESS [4:13.231s]
[INFO] Apache cTAKES CoReference Resolver ................ SUCCESS [2:48.639s]
[INFO] Apache cTAKES Resources drug-ner .................. SUCCESS [5.803s]
[INFO] Apache cTAKES Drug NER ............................ SUCCESS [2:09.480s]
[INFO] Apache cTAKES Resources side-effect ............... SUCCESS [6.312s]
[INFO] Apache cTAKES Side Effects ........................ SUCCESS [3:29.121s]
[INFO] Apache cTAKES Resources smoking-status ............ SUCCESS [8.847s]
[INFO] Apache cTAKES Smoking Status ...................... SUCCESS [4:16.791s]
[INFO] Apache cTAKES Resources assertion ................. SUCCESS [32.465s]
[INFO] Apache cTAKES Assertion ........................... SUCCESS [4:17.697s]
[INFO] Apache cTAKES Resources assertion-zoner ........... SUCCESS [6.570s]
[INFO] Apache cTAKES Assertion's zoner ................... SUCCESS [38.498s]
[INFO] Apache cTAKES Resources temporal .................. SUCCESS [13.800s]
[INFO] Apache cTAKES Resources ctakes-ytex-res ........... SUCCESS [15.047s]
[INFO] Apache cTAKES YTEX ................................ SUCCESS [1:28.368s]
[INFO] Apache cTAKES YTEX UIMA ........................... SUCCESS [6:21.701s]
[INFO] Apache cTAKES Resources dictionary-lookup-fast-res  SUCCESS [1:17.128s]
[INFO] Apache cTAKES dictionary lookup fast .............. SUCCESS [45.434s]
[INFO] Apache cTAKES ctakes-clinical-pipeline ............ SUCCESS [3:09.888s]
[INFO] Apache cTAKES Temporal Information Extraction ..... SUCCESS [37:52.578s]
[INFO] Apache cTAKES YTEX Web ............................ SUCCESS [1:43.959s]
[INFO] Apache cTAKES Distribution ........................ SUCCESS [13.147s]
[INFO] Apache cTAKES Regression-test ..................... SUCCESS [3:43.301s]
[INFO] Apache cTAKES template filler ..................... SUCCESS [1:30.666s]
[INFO] ctakes-examples ................................... SUCCESS [1:45.199s]
[INFO] ------------------------------------------------------------------------
[INFO] BUILD SUCCESS
[INFO] ------------------------------------------------------------------------
[INFO] Total time: 2:36:05.908s
[INFO] Finished at: Mon May 18 18:04:53 EDT 2015
[INFO] Final Memory: 72M/244M
[INFO] ------------------------------------------------------------------------

I think there’s a long outstanding issue where you would need to –DskipTests=true during
package/install phase because that unit test can’t read lvg from a resource jar... I think
that issue is still outstanding; not sure if folks would like to address it for this particular
patch release.

--Pei

From: Kim Ebert [mailto:kim.ebert@perfectsearchcorp.com]
Sent: Monday, May 18, 2015 2:59 PM
To: dev@ctakes.apache.org
Subject: Re: [VOTE] Release Apache cTAKES 3.2.2 (rc2)


[ ] -1 Do not release the packages because...
Tests run: 1, Failures: 0, Errors: 1, Skipped: 0, Time elapsed: 0.83 sec <<< FAILURE!

Results :

Tests in error:
  TestClearNLPPipeLine(org.apache.ctakes.dependency.parser.ae.util.TestClearNLPAnalysisEngines):
URI is not hierarchical
[IMAT Solutions]<https://urldefense.proofpoint.com/v2/url?u=http-3A__imatsolutions.com&d=BQMDaQ&c=qS4goWBT7poplM69zy_3xhKwEW14JZMSdioCoppxeFU&r=huK2MFkj300qccT8OSuuoYhy_xEYujfPwiAxhPVz5WY&m=7L5MUxlkhMYDS-BUpfA2NU3vIPZgSwZqSyMm4dfICQg&s=SLBMkQmi7n1iTY_1eb1WRhe2PmFhbT9yh51nijDPvyI&e=>
Kim Ebert
Software Engineer
[Office:]208.971.1509
kim.ebert@imatsolutions.com<mailto:greg.hubert@imatsolutions.com>
On 05/13/2015 08:37 AM, Pei Chen wrote:

This is a call for a vote on releasing the following candidate (rc2) as

Apache cTAKES 3.2.2.



The major change since rc1 was to include the fix for CTAKES-359 - UMLS

Authentication failing despite correct username and password.



For more detailed information on the changes/release notes, please visit:

https://issues.apache.org/jira/secure/ReleaseNote.jspa?projectId=12313621&version=12328717<https://urldefense.proofpoint.com/v2/url?u=https-3A__issues.apache.org_jira_secure_ReleaseNote.jspa-3FprojectId-3D12313621-26version-3D12328717&d=BQMDaQ&c=qS4goWBT7poplM69zy_3xhKwEW14JZMSdioCoppxeFU&r=huK2MFkj300qccT8OSuuoYhy_xEYujfPwiAxhPVz5WY&m=7L5MUxlkhMYDS-BUpfA2NU3vIPZgSwZqSyMm4dfICQg&s=0q8GepmP-AIzXsYOFAKzAJu4QaOaIPtE9ViFGYf5AdE&e=>



The release was made using the cTAKES release process documented here:

http://svn.apache.org/repos/asf/ctakes/site/backup/content/ctakes-release-guide.mdtext<https://urldefense.proofpoint.com/v2/url?u=http-3A__svn.apache.org_repos_asf_ctakes_site_backup_content_ctakes-2Drelease-2Dguide.mdtext&d=BQMDaQ&c=qS4goWBT7poplM69zy_3xhKwEW14JZMSdioCoppxeFU&r=huK2MFkj300qccT8OSuuoYhy_xEYujfPwiAxhPVz5WY&m=7L5MUxlkhMYDS-BUpfA2NU3vIPZgSwZqSyMm4dfICQg&s=cNTzigd32BmHzDhNb0pc7_Pky08MEtMVhqTZwpuLP1E&e=>



The candidate is available at:

https://dist.apache.org/repos/dist/dev/ctakes/ctakes-3.2.2-rc2/apache-ctakes-3.2.2-src.tar.gz<https://urldefense.proofpoint.com/v2/url?u=https-3A__dist.apache.org_repos_dist_dev_ctakes_ctakes-2D3.2.2-2Drc2_apache-2Dctakes-2D3.2.2-2Dsrc.tar.gz&d=BQMDaQ&c=qS4goWBT7poplM69zy_3xhKwEW14JZMSdioCoppxeFU&r=huK2MFkj300qccT8OSuuoYhy_xEYujfPwiAxhPVz5WY&m=7L5MUxlkhMYDS-BUpfA2NU3vIPZgSwZqSyMm4dfICQg&s=Xh_RsG-SLQfGIK9Mm5Wikv06-ntVracmEF0nTR4YHUI&e=>

/.zip



The tag to be voted on:

http://svn.apache.org/repos/asf/ctakes/tags/ctakes-3.2.2-rc2<https://urldefense.proofpoint.com/v2/url?u=http-3A__svn.apache.org_repos_asf_ctakes_tags_ctakes-2D3.2.2-2Drc2&d=BQMDaQ&c=qS4goWBT7poplM69zy_3xhKwEW14JZMSdioCoppxeFU&r=huK2MFkj300qccT8OSuuoYhy_xEYujfPwiAxhPVz5WY&m=7L5MUxlkhMYDS-BUpfA2NU3vIPZgSwZqSyMm4dfICQg&s=PYB1Ysr91TLwULgR4JFUX7HX9WhwWGLzsIxBHsLyHgs&e=>

The MD5 checksum of the tarball can be found at:

https://dist.apache.org/repos/dist/dev/ctakes/ctakes-3.2.2-rc2/apache-ctakes-3.2.2-src.tar.gz.md5<https://urldefense.proofpoint.com/v2/url?u=https-3A__dist.apache.org_repos_dist_dev_ctakes_ctakes-2D3.2.2-2Drc2_apache-2Dctakes-2D3.2.2-2Dsrc.tar.gz.md5&d=BQMDaQ&c=qS4goWBT7poplM69zy_3xhKwEW14JZMSdioCoppxeFU&r=huK2MFkj300qccT8OSuuoYhy_xEYujfPwiAxhPVz5WY&m=7L5MUxlkhMYDS-BUpfA2NU3vIPZgSwZqSyMm4dfICQg&s=MVx9tZTThRbARCWwhF6H8gGzoq2Lxt0YNIHegaVudQY&e=>

/.zip.md5



The signature of the tarball can be found at:

https://dist.apache.org/repos/dist/dev/ctakes/ctakes-3.2.2-rc2/apache-ctakes-3.2.2-src.tar.gz.asc<https://urldefense.proofpoint.com/v2/url?u=https-3A__dist.apache.org_repos_dist_dev_ctakes_ctakes-2D3.2.2-2Drc2_apache-2Dctakes-2D3.2.2-2Dsrc.tar.gz.asc&d=BQMDaQ&c=qS4goWBT7poplM69zy_3xhKwEW14JZMSdioCoppxeFU&r=huK2MFkj300qccT8OSuuoYhy_xEYujfPwiAxhPVz5WY&m=7L5MUxlkhMYDS-BUpfA2NU3vIPZgSwZqSyMm4dfICQg&s=2Q67800RBncc6aNG4pYiWEoEUb651gpFoOXXMlNHJLM&e=>

/.zip.asc



Apache cTAKES' KEYS file, containing the PGP keys used to sign the release:

https://dist.apache.org/repos/dist/release/ctakes/KEYS<https://urldefense.proofpoint.com/v2/url?u=https-3A__dist.apache.org_repos_dist_release_ctakes_KEYS&d=BQMDaQ&c=qS4goWBT7poplM69zy_3xhKwEW14JZMSdioCoppxeFU&r=huK2MFkj300qccT8OSuuoYhy_xEYujfPwiAxhPVz5WY&m=7L5MUxlkhMYDS-BUpfA2NU3vIPZgSwZqSyMm4dfICQg&s=Z2mFjX2pyjO3sFfi6q2LxZRjc_uh6E_HMS5kEC1QaFg&e=>



Please vote on releasing these packages as Apache cTAKES 3.2.2. The vote is

open for at least the next 72 hours.



The vote passes if at least three binding +1 votes are cast.

[ ] +1 Release the packages as Apache cTAKES 3.2.2

[ ] -1 Do not release the packages because...



Also, the convenience binary can be found at:

https://dist.apache.org/repos/dist/dev/ctakes/ctakes-3.2.2-rc2/apache-ctakes-3.2.2-bin.tar.gz.md5<https://urldefense.proofpoint.com/v2/url?u=https-3A__dist.apache.org_repos_dist_dev_ctakes_ctakes-2D3.2.2-2Drc2_apache-2Dctakes-2D3.2.2-2Dbin.tar.gz.md5&d=BQMDaQ&c=qS4goWBT7poplM69zy_3xhKwEW14JZMSdioCoppxeFU&r=huK2MFkj300qccT8OSuuoYhy_xEYujfPwiAxhPVz5WY&m=7L5MUxlkhMYDS-BUpfA2NU3vIPZgSwZqSyMm4dfICQg&s=yC9TgSVlyFJd1Q5HyUaNPdp7tTevjTbONipoSLql72I&e=>

/.zip



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