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From "Finan, Sean" <Sean.Fi...@childrens.harvard.edu>
Subject RE: UMLS Integration
Date Tue, 16 Dec 2014 07:09:37 GMT
Hi Praveen,

I think that this question might be better aimed at the nlm umls community.  The standard
cTakes installation does not follow this workflow.

Sean

-----Original Message-----
From: Jay_Ram [mailto:pandupraveen585@gmail.com] 
Sent: Tuesday, December 16, 2014 12:10 AM
To: dev@ctakes.apache.org
Subject: UMLS Integration

Hi All,

I downloaded UMLS resource, to use them offline by loading in mysql. I followed them which
are mentioned to load data into mysql. But I am unable to do it show error
--------------------------------------------
Loading MetamorphoSys ...
    [Please be patient and wait for MetamorphoSys to begin]
--------------------------------------------
java.util.zip.ZipException: invalid LOC header (bad signature)
        at java.util.zip.ZipFile.read(Native Method)
        at java.util.zip.ZipFile.access$1400(Unknown Source)
        at java.util.zip.ZipFile$ZipFileInputStream.read(Unknown Source)
        at java.util.zip.ZipFile$ZipFileInflaterInputStream.fill(Unknown
Source)
        at java.util.zip.InflaterInputStream.read(Unknown Source)
        at java.util.zip.InflaterInputStream.read(Unknown Source)
        at java.util.zip.CheckedInputStream.read(Unknown Source)
        at java.util.zip.GZIPInputStream.readUByte(Unknown Source)
        at java.util.zip.GZIPInputStream.readUShort(Unknown Source)
        at java.util.zip.GZIPInputStream.readHeader(Unknown Source)
        at java.util.zip.GZIPInputStream.<init>(Unknown Source)
        at
gov.nih.nlm.umls.meta.io.RRFMetadataInputStream.openSourceFile(RRFMetadataInputStream.java:390)
        at
gov.nih.nlm.umls.meta.io.RRFConceptInputStream.open(RRFConceptInputStream.java:175)
        at
gov.nih.nlm.umls.meta.io.RRFMetathesaurusInputStream.open(RRFMetathesaurusInputStream.java:125)
        at
gov.nih.nlm.umls.mmsys.io.RRFMetamorphoSysInputStream.open(RRFMetamorphoSysInputStream.java:629)
        at
gov.nih.nlm.umls.mmsys.subset.gui.MetamorphoSysGUI.validateGUIConfigurables(MetamorphoSysGUI.java:1097)
        at
gov.nih.nlm.umls.mmsys.subset.gui.BeginSubsetAction.actionPerformed(BeginSubsetAction.java:110)
        at javax.swing.AbstractButton.fireActionPerformed(Unknown Source)
        at javax.swing.AbstractButton$Handler.actionPerformed(Unknown
Source)
        at javax.swing.DefaultButtonModel.fireActionPerformed(Unknown
Source)
        at javax.swing.DefaultButtonModel.setPressed(Unknown Source)
        at javax.swing.AbstractButton.doClick(Unknown Source)
        at javax.swing.plaf.basic.BasicMenuItemUI.doClick(Unknown Source)
        at
javax.swing.plaf.basic.BasicMenuItemUI$Handler.mouseReleased(Unknown Source)
        at java.awt.AWTEventMulticaster.mouseReleased(Unknown Source)
        at java.awt.Component.processMouseEvent(Unknown Source)
        at javax.swing.JComponent.processMouseEvent(Unknown Source)
        at java.awt.Component.processEvent(Unknown Source)
        at java.awt.Container.processEvent(Unknown Source)
        at java.awt.Component.dispatchEventImpl(Unknown Source)
        at java.awt.Container.dispatchEventImpl(Unknown Source)
        at java.awt.Component.dispatchEvent(Unknown Source)
        at java.awt.LightweightDispatcher.retargetMouseEvent(Unknown Source)
        at java.awt.LightweightDispatcher.processMouseEvent(Unknown Source)
        at java.awt.LightweightDispatcher.dispatchEvent(Unknown Source)
        at java.awt.Container.dispatchEventImpl(Unknown Source)
        at java.awt.Window.dispatchEventImpl(Unknown Source)
        at java.awt.Component.dispatchEvent(Unknown Source)
        at java.awt.EventQueue.dispatchEventImpl(Unknown Source)
        at java.awt.EventQueue.access$200(Unknown Source)
        at java.awt.EventQueue$3.run(Unknown Source)
        at java.awt.EventQueue$3.run(Unknown Source)
        at java.security.AccessController.doPrivileged(Native Method)
        at java.security.ProtectionDomain$1.doIntersectionPrivilege(Unknown
Source)
        at java.security.ProtectionDomain$1.doIntersectionPrivilege(Unknown
Source)
        at java.awt.EventQueue$4.run(Unknown Source)
        at java.awt.EventQueue$4.run(Unknown Source)
        at java.security.AccessController.doPrivileged(Native Method)
        at java.security.ProtectionDomain$1.doIntersectionPrivilege(Unknown
Source)
        at java.awt.EventQueue.dispatchEvent(Unknown Source)
        at java.awt.EventDispatchThread.pumpOneEventForFilters(Unknown
Source)
        at java.awt.EventDispatchThread.pumpEventsForFilter(Unknown Source)
        at java.awt.EventDispatchThread.pumpEventsForHierarchy(Unknown
Source)
        at java.awt.EventDispatchThread.pumpEvents(Unknown Source)
        at java.awt.EventDispatchThread.pumpEvents(Unknown Source)
        at java.awt.EventDispatchThread.run(Unknown Source)

Please help to slove this issue. Thaks in advance.

Regards,
Praveen.
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