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From "Finan, Sean" <Sean.Fi...@childrens.harvard.edu>
Subject RE: Problem running cTakes-clinical pipeline --> AggregatePlaintextFastUMLSProcessor.xml
Date Mon, 15 Dec 2014 22:08:00 GMT
Hi Yu,

> Also do you know is there any command line I can run to annotate like a thousand files
automatically rather than copy and paster.

You could try the CPE gui : bin/runctakesCPE.sh

Sean

From: Liang, Yu [mailto:Yu.Liang@nyumc.org]
Sent: Monday, December 15, 2014 4:51 PM
To: dev@ctakes.apache.org
Subject: Problem running cTakes-clinical pipeline --> AggregatePlaintextFastUMLSProcessor.xml



Hi Yu,
I think this is a current limitation in cTAKES.  I think it has to do with negation not detecting
if the line breaks are separating the sentences.

Would you mind forwarding the example to dev@ctakes.apache.org<mailto:dev@ctakes.apache.org>?
I think Tim and others may be working on this issue.

--Pei

On Mon, Dec 15, 2014 at 3:54 PM, Liang, Yu <Yu.Liang@nyumc.org<mailto:Yu.Liang@nyumc.org>>
wrote:
On Dec 15, 2014, at 2:58 PM, Liang, Yu <Yu.Liang@nyumc.org<mailto:Yu.Liang@nyumc.org>>
wrote:

Hi Pei Chen,

Could you please look at the following example I run, I think the result is not accurate.
The polarity of illness  is -1 but for fever, vomiting, diarrhea,and pain are all +1.

Also do you know is there any command line I can run to annotate like a thousand files automatically
rather than copy and paster.

Yu Liang


[cid:DF19883E-B993-4CD0-90BD-F285A3C1A5A3@wireless.nyumc.org]
Yu Liang

CHIBI






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