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From Pei Chen <chen...@apache.org>
Subject Apache cTAKES 3.2.1 release preperation
Date Fri, 26 Sep 2014 14:41:09 GMT
There is a 3.2.1 release slated for end of Oct.  The major changes are:
uimafit 2.1 upgrade, cleakTK upgrade, New temporal relations models.
Below is a summary of what was scheduled to go in (some may be still
unresolved).
Feel free to edit/update Jira if you believe something should be
included/omitted in preparation...

  Sub-task

   - [CTAKES-124 <https://issues.apache.org/jira/browse/CTAKES-124>] -
   remove internal UIMA types from coreference
   - [CTAKES-312 <https://issues.apache.org/jira/browse/CTAKES-312>] -
   upgrade uimafit

Bug

   - [CTAKES-76 <https://issues.apache.org/jira/browse/CTAKES-76>] - get
   third party dependencies into Maven Central
   - [CTAKES-155 <https://issues.apache.org/jira/browse/CTAKES-155>] -
   SimpleSegmentWithTagsAnnotator assumes all section names are 5 characters
   - [CTAKES-162 <https://issues.apache.org/jira/browse/CTAKES-162>] -
   Command line scripts leave the user back one directory
   - [CTAKES-169 <https://issues.apache.org/jira/browse/CTAKES-169>] -
   SectionSegmentAnnotator.java is in core, but the sample
   SectionSegmentAnnotator.xml descriptor is in ctakes-clinical-pipeline
   - [CTAKES-178 <https://issues.apache.org/jira/browse/CTAKES-178>] -
   parsing of medication strength does not verify a number was discovered
   (strength value includes both the dosage and strength value in some cases)
   - [CTAKES-213 <https://issues.apache.org/jira/browse/CTAKES-213>] -
   ModifierExtractorAnnotator should produce XxxxModifier subtypes
   - [CTAKES-241 <https://issues.apache.org/jira/browse/CTAKES-241>] -
   NullPointerException in ctakes-assertion
   - [CTAKES-275 <https://issues.apache.org/jira/browse/CTAKES-275>] - some
   of the older junit tests don't have the right Project name in the run
   configurations
   - [CTAKES-280 <https://issues.apache.org/jira/browse/CTAKES-280>] -
   upgrade to cleartk-2.*
   - [CTAKES-285 <https://issues.apache.org/jira/browse/CTAKES-285>] -
   cleartk-ml-liblinear needs to be added to the dependencies
   - [CTAKES-302 <https://issues.apache.org/jira/browse/CTAKES-302>] -
   Element type "hibernate-mapping" must be followed by either attribute
   specifications, ">" or "/>".
   - [CTAKES-307 <https://issues.apache.org/jira/browse/CTAKES-307>] - URI
   is not hierarchical when running mvn install
   - [CTAKES-309 <https://issues.apache.org/jira/browse/CTAKES-309>] - Add
   SNOMEDCT_US to ytext db scripts
   - [CTAKES-310 <https://issues.apache.org/jira/browse/CTAKES-310>] -
   Dictionary lookup permutations sort issue
   - [CTAKES-311 <https://issues.apache.org/jira/browse/CTAKES-311>] -
   v_document_cui_sent View returns no results in cTAKES-YTEX

Improvement

   - [CTAKES-77 <https://issues.apache.org/jira/browse/CTAKES-77>] - Update
   POSTagger Unit Tests
   - [CTAKES-78 <https://issues.apache.org/jira/browse/CTAKES-78>] - Update
   Chunker unit tests
   - [CTAKES-94 <https://issues.apache.org/jira/browse/CTAKES-94>] -
   refactoring assertion module to use a cleartk-based analysis engine (and
   include evaluation)
   - [CTAKES-122 <https://issues.apache.org/jira/browse/CTAKES-122>] -
   include LVG with a future version of cTAKES?
   - [CTAKES-172 <https://issues.apache.org/jira/browse/CTAKES-172>] -
   relation-extractor is using StatusAnnotator and NegationAnnotator instead
   of AssertionAnnotator
   - [CTAKES-222 <https://issues.apache.org/jira/browse/CTAKES-222>] -
   FirstTokenPermLookupInitializerImpl to suppot arraylist of
   DictionaryLookupWindows
   - [CTAKES-225 <https://issues.apache.org/jira/browse/CTAKES-225>] -
   Common Type System - Add field to save preferredText in Segment
   - [CTAKES-295 <https://issues.apache.org/jira/browse/CTAKES-295>] - Use
   UIMAFit-style configuration annotations

Task

   - [CTAKES-74 <https://issues.apache.org/jira/browse/CTAKES-74>] -
   Tokenizer PennTreeBank breaks with certain apostrophes in tokens.
   - [CTAKES-138 <https://issues.apache.org/jira/browse/CTAKES-138>] -
   Remove 3rd party jars from our SVN
   - [CTAKES-232 <https://issues.apache.org/jira/browse/CTAKES-232>] -
   change concept type
   - [CTAKES-315 <https://issues.apache.org/jira/browse/CTAKES-315>] -
   Update Default UMLS pipeline to use dictionary-lookup-fast

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