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From: "Chen, Pei" <Pei.Chen@childrens.harvard.edu>
To: "dev@ctakes.apache.org" <dev@ctakes.apache.org>
Subject: RE: [VOTE] Release Apache cTAKES 3.2.0 (rc2)
Thread-Topic: [VOTE] Release Apache cTAKES 3.2.0 (rc2)
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Date: Tue, 22 Jul 2014 14:59:56 +0000
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Thanks James.
I was planning on closing the vote today.
In the meantime, does anyone a quick way to clone/rename the wiki documenta=
tion for 3.2?
--Pei

> -----Original Message-----
> From: Masanz, James J. [mailto:Masanz.James@mayo.edu]
> Sent: Monday, July 21, 2014 4:25 PM
> To: 'dev@ctakes.apache.org'
> Subject: RE: [VOTE] Release Apache cTAKES 3.2.0 (rc2)
>=20
> Here's the additional I've done
>=20
> I ran "mvn test" with 0 Failures and 0 Errors.
> Ran the AggregateTemplateFiller.xml and received same output (except for
> internal UIMA identifiers) with rc2 as I did with 3.1.1.
>=20
> +1 to release
>=20
> -----Original Message-----
> From: Masanz, James J.
> Sent: Wednesday, July 16, 2014 3:59 PM
> To: 'dev@ctakes.apache.org'
> Subject: RE: [VOTE] Release Apache cTAKES 3.2.0 (rc2)
>=20
> FYI, so far I have done the following steps:
>=20
> downloaded the source archive
> compiled it using: maven compile
> downloaded the separately available resources set up classpath to include
> e.g. jars (from the bin distribution) set ctakes.umlsuser and  ctakes.uml=
spw
> env vars run  runctakesCVD.bat loaded
> AggregatePlaintextUMLSProcessor.xml
> ran against some simple text.
> verified did not through an exception.
> verified some EventMention and EntityMention annotations were produced.
>=20
> I will do more testing tomorrow. Just giving a status update.
>=20
> --James
>=20
> -----Original Message-----
> From: Miller, Timothy [mailto:Timothy.Miller@childrens.harvard.edu]
> Sent: Saturday, July 12, 2014 6:24 AM
> To: dev@ctakes.apache.org
> Subject: RE: [VOTE] Release Apache cTAKES 3.2.0 (rc2)
>=20
> Agreed on that.
>=20
> I downloaded the new resources binary and was able to run my tests on the=
 -
> bin version of the RC.
>=20
> +1 for making this the release.
>=20
> Tim
>=20
>=20
> ________________________________________
> From: Masanz, James J. [Masanz.James@mayo.edu]
> Sent: Friday, July 11, 2014 7:27 PM
> To: 'dev@ctakes.apache.org'
> Subject: RE: [VOTE] Release Apache cTAKES 3.2.0 (rc2)
>=20
> I agree about keeping the thread open.
>=20
> -- James
>=20
> -----Original Message-----
> From: Chen, Pei [mailto:Pei.Chen@childrens.harvard.edu]
> Sent: Friday, July 11, 2014 4:28 PM
> To: dev@ctakes.apache.org
> Subject: RE: [VOTE] Release Apache cTAKES 3.2.0 (rc2)
>=20
> Updated the lvg.properties file within ctakes-resources on sourceforge [1=
].
> Since the Apache cTAKES artifacts didn't change, I would like to keep thi=
s
> VOTE thread open.
>=20
> Also renamed it to 3.2.0 (even though they technically do not have to fol=
low
> each other, but probably nice to keep it consistent for users as James
> suggested.) [1]
> http://sourceforge.net/projects/ctakesresources/files/ctakes-resources-
> 3.2.0.zip/download
>=20
> > -----Original Message-----
> > From: Masanz, James J. [mailto:Masanz.James@mayo.edu]
> > Sent: Thursday, July 10, 2014 5:53 PM
> > To: 'dev@ctakes.apache.org'
> > Subject: RE: [VOTE] Release Apache cTAKES 3.2.0 (rc2)
> >
> > Can you also give ctakesresources the number 3.2 or 3.2.0 instead of
> > 3.1.3
> >
> > -----Original Message-----
> > From: Chen, Pei [mailto:Pei.Chen@childrens.harvard.edu]
> > Sent: Thursday, July 10, 2014 2:12 PM
> > To: dev@ctakes.apache.org
> > Subject: RE: [VOTE] Release Apache cTAKES 3.2.0 (rc2)
> >
> > I think this is due to the fact that the default lvg.properties also
> > exits in the ctakes-resources project, so if you download and replace,
> > it will override the ctakes configured one.
> > I think it's a bug, but probably always been there...
> > I'll fix up ctakes-resources on sourceforge nethertheless but it
> > shouldn't require any changes to the release candidates.
> >
> > > -----Original Message-----
> > > From: Masanz, James J. [mailto:Masanz.James@mayo.edu]
> > > Sent: Thursday, July 10, 2014 11:59 AM
> > > To: 'dev@ctakes.apache.org'
> > > Subject: RE: [VOTE] Release Apache cTAKES 3.2.0 (rc2)
> > >
> > > Hi Tim,
> > >
> > > When you say that it didn't seem to affect the run, where you
> > > comparing output to last release or just checking if data seemed OK
> > > at a
> > glance?
> > >
> > > -----Original Message-----
> > > From: Miller, Timothy [mailto:Timothy.Miller@childrens.harvard.edu]
> > > Sent: Thursday, July 10, 2014 7:29 AM
> > > To: dev@ctakes.apache.org
> > > Subject: RE: [VOTE] Release Apache cTAKES 3.2.0 (rc2)
> > >
> > > I was able to run the binary without issues this time.
> > > I also downloaded the resources from sourceforge and integrated into
> > > the bin release and ran with the ctakes dictionary.
> > >
> > > I did get some weird exceptions thrown that didn't seem to affect
> > > the run -- looks like some hardcoded file paths in LVG? (See below)
> > >
> > > Tim
> > >
> > >
> > > Exception: java.io.FileNotFoundException:
> > > /export/home/lu/Development/LVG/lvg2008/data/misc/stopWords.data
> > > (No such file or directory)
> > > ** Error: problem of opening/reading stop words file:
> > >
> '/export/home/lu/Development/LVG/lvg2008/data/misc/stopWords.data'.
> > > Exception: java.io.FileNotFoundException:
> > >
> >
> /export/home/lu/Development/LVG/lvg2008/data/misc/nonInfoWords.data
> > > (No such file or directory)
> > > ** Error: problem of opening/reading non-Info words file:
> > >
> >
> '/export/home/lu/Development/LVG/lvg2008/data/misc/nonInfoWords.dat
> > > a'.
> > > Exception: java.io.FileNotFoundException:
> > >
> >
> /export/home/lu/Development/LVG/lvg2008/data/misc/conjunctionWord.d
> > > ata (No such file or directory)
> > > ** Error: problem of opening/reading conjunction words file:
> > >
> >
> '/export/home/lu/Development/LVG/lvg2008/data/misc/conjunctionWord.
> > > data'.
> > > ** ERR: problem of opening/reading diacritics file:
> > >
> >
> '/export/home/lu/Development/LVG/lvg2008/data/Unicode/diacriticMap.da
> > > ta'.
> > > Exception: java.io.FileNotFoundException:
> > >
> >
> /export/home/lu/Development/LVG/lvg2008/data/Unicode/diacriticMap.da
> > > ta (No such file or directory)
> > > Exception: java.io.FileNotFoundException:
> > >
> >
> /export/home/lu/Development/LVG/lvg2008/data/Unicode/ligatureMap.da
> > > ta (No such file or directory)
> > > ** Error: problem of opening/reading ligature file:
> > >
> >
> '/export/home/lu/Development/LVG/lvg2008/data/Unicode/ligatureMap.da
> > > ta'.
> > > ** Error: problem of opening/reading symbol synonym file:
> > >
> >
> '/export/home/lu/Development/LVG/lvg2008/data/Unicode/synonymMap.
> > > data'.
> > > Exception: java.io.FileNotFoundException:
> > >
> >
> /export/home/lu/Development/LVG/lvg2008/data/Unicode/synonymMap.d
> > > ata (No such file or directory)
> > > **Error: problem of opening/reading file
> > > '/export/home/lu/Development/LVG/lvg2008/data/misc/removeS.data'.
> > > Exception: java.io.FileNotFoundException:
> > > /export/home/lu/Development/LVG/lvg2008/data/misc/removeS.data
> > (No
> > > such file or directory)
> > > ** Error: problem of opening/reading Unicode symbol file:
> > >
> >
> '/export/home/lu/Development/LVG/lvg2008/data/Unicode/symbolMap.da
> > > ta'.
> > > Exception: java.io.FileNotFoundException:
> > >
> >
> /export/home/lu/Development/LVG/lvg2008/data/Unicode/symbolMap.dat
> > > a (No such file or directory)
> > > ** Error: problem of opening/reading Unicode file:
> > >
> >
> '/export/home/lu/Development/LVG/lvg2008/data/Unicode/unicodeMap.d
> > > ata'.
> > > Exception: java.io.FileNotFoundException:
> > >
> >
> /export/home/lu/Development/LVG/lvg2008/data/Unicode/unicodeMap.da
> > > ta (No such file or directory)
> > > ** Error: problem of opening/reading nonStripMap file:
> > >
> >
> '/export/home/lu/Development/LVG/lvg2008/data/Unicode/nonStripMap.d
> > > ata'.
> > > Exception: java.io.FileNotFoundException:
> > >
> >
> /export/home/lu/Development/LVG/lvg2008/data/Unicode/nonStripMap.d
> > > ata (No such file or directory)
> > > java.sql.SQLException: File input/output error
> > >
> >
> /export/home/lu/Development/LVG/lvg2008/data/HSqlDb/lvg2008.properti
> > > es java.io.FileNotFoundException:
> > >
> >
> /export/home/lu/Development/LVG/lvg2008/data/HSqlDb/lvg2008.properti
> > > es.new (No such file or directory)
> > >
> > > ________________________________________
> > > From: Masanz, James J. [Masanz.James@mayo.edu]
> > > Sent: Wednesday, July 09, 2014 2:26 PM
> > > To: 'dev@ctakes.apache.org'
> > > Subject: RE: [VOTE] Release Apache cTAKES 3.2.0 (rc2)
> > >
> > > So far for rc2, I've
> > >
> > > Verified MD5  and signatures of .zip archives Verified that source
> > > at tag matches source in.zip Imported source from archive into
> > > eclipse as maven
> > > project(s) and compiled without any Errors.
> > >
> > > --  James
> > >
> > >
> > > -----Original Message-----
> > > From: Pei Chen [mailto:chenpei@apache.org]
> > > Sent: Tuesday, July 08, 2014 5:11 PM
> > > To: dev@ctakes.apache.org
> > > Subject: [VOTE] Release Apache cTAKES 3.2.0 (rc2)
> > >
> > > Hi all,
> > >
> > > The main difference between rc1 and rc2 is that we removed the
> > > lvg-res and assertion-res.jar from the distro.  They still need to be
> unpacked.
> > >
> > > This is a call for a vote on releasing the following candidate (rc2)
> > > as Apache cTAKES 3.2.0.
> > > The major changes include:
> > > - New optional YTEX component(s) (Yale Extensions to cTAKES)
> > > - New optional improved/faster dictionary lookup
> > > (dictionary-lookup-fast)
> > > - New optional Temporal component (Time + Event extraction.
> > > Relations will be including in a future release.)
> > > - Other bug fixes/enhancements from Jira
> > >
> > > [TODO: Online documentation still needs to be updated on wiki]
> > >
> > > For more detailed information on the changes/release notes, please vi=
sit:
> > > https://issues.apache.org/jira/secure/ReleaseNote.jspa?projectId=3D12=
3
> > > 13
> > > 621
> > > &version=3D12324066
> > >
> > > The release was made using the cTAKES release process documented
> here:
> > > http://ctakes.apache.org/ctakes-release-guide.html
> > >
> > > The candidate is available at:
> > > http://people.apache.org/~chenpei/RCs/ctakes-3.2.0-rc2/apache-ctakes
> > > -
> > > 3.2.0-src.tar.gz
> > > /.zip
> > >
> > > The tag to be voted on:
> > > http://svn.apache.org/repos/asf/ctakes/tags/ctakes-3.2.0-rc2
> > >
> > > The MD5 checksum of the tarball can be found at:
> > > http://people.apache.org/~chenpei/RCs/ctakes-3.2.0-rc2/apache-ctakes
> > > -
> > > 3.2.0-src.tar.gz.md5
> > > /.zip.md5
> > >
> > > The signature of the tarball can be found at:
> > > http://people.apache.org/~chenpei/RCs/ctakes-3.2.0-rc2/apache-ctakes
> > > -
> > > 3.2.0-src.tar.gz.asc
> > > /.zip.asc
> > >
> > > Apache cTAKES' KEYS file, containing the PGP keys used to sign the
> release:
> > > https://dist.apache.org/repos/dist/release/ctakes/KEYS
> > >
> > > Please vote on releasing these packages as Apache cTAKES 3.2.0. The
> > > vote is open for at least the next 72 hours.
> > > Only votes from the cTAKES PMC are binding, but folks are welcome to
> > > check the release candidate and voice their approval or disapproval.
> > > The vote passes if at least three binding +1 votes are cast.
> > >
> > > [ ] +1 Release the packages as Apache cTAKES 3.2.0 [ ] -1 Do not
> > > release the packages because...
> > >
> > > Also, the convenience binary can be found at:
> > > http://people.apache.org/~chenpei/RCs/ctakes-3.2.0-rc2/apache-ctakes
> > > -
> > > 3.2.0-bin.tar.gz
> > > /.zip
> > >
> > > Note: It's temporarily on people.a.o because the artifacts were too
> > > large for https://dist.apache.org/repos/dist/dev/ctakes (Working
> > > with infra on increasing the limit).
> > >
> > >
> > > Thanks!