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Date: Mon, 21 Jul 2014 20:24:22 +0000
From: "Masanz, James J." <Masanz.James@mayo.edu>
Subject: RE: [VOTE] Release Apache cTAKES 3.2.0 (rc2)
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To: "'dev@ctakes.apache.org'" <dev@ctakes.apache.org>
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Thread-topic: [VOTE] Release Apache cTAKES 3.2.0 (rc2)
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Here's the additional I've done

I ran "mvn test" with 0 Failures and 0 Errors.
Ran the AggregateTemplateFiller.xml and received same output (except for in=
ternal UIMA identifiers) with rc2 as I did with 3.1.1.

+1 to release

-----Original Message-----
From: Masanz, James J.=20
Sent: Wednesday, July 16, 2014 3:59 PM
To: 'dev@ctakes.apache.org'
Subject: RE: [VOTE] Release Apache cTAKES 3.2.0 (rc2)

FYI, so far I have done the following steps:

downloaded the source archive
compiled it using: maven compile=20
downloaded the separately available resources
set up classpath to include e.g. jars (from the bin distribution)
set ctakes.umlsuser and  ctakes.umlspw env vars
run  runctakesCVD.bat
loaded AggregatePlaintextUMLSProcessor.xml
ran against some simple text.
verified did not through an exception.
verified some EventMention and EntityMention annotations were produced.

I will do more testing tomorrow. Just giving a status update.

--James

-----Original Message-----
From: Miller, Timothy [mailto:Timothy.Miller@childrens.harvard.edu]=20
Sent: Saturday, July 12, 2014 6:24 AM
To: dev@ctakes.apache.org
Subject: RE: [VOTE] Release Apache cTAKES 3.2.0 (rc2)

Agreed on that.

I downloaded the new resources binary and was able to run my tests on the -=
bin version of the RC.

+1 for making this the release.

Tim


________________________________________
From: Masanz, James J. [Masanz.James@mayo.edu]
Sent: Friday, July 11, 2014 7:27 PM
To: 'dev@ctakes.apache.org'
Subject: RE: [VOTE] Release Apache cTAKES 3.2.0 (rc2)

I agree about keeping the thread open.

-- James

-----Original Message-----
From: Chen, Pei [mailto:Pei.Chen@childrens.harvard.edu]
Sent: Friday, July 11, 2014 4:28 PM
To: dev@ctakes.apache.org
Subject: RE: [VOTE] Release Apache cTAKES 3.2.0 (rc2)

Updated the lvg.properties file within ctakes-resources on sourceforge [1].=
  Since the Apache cTAKES artifacts didn't change, I would like to keep thi=
s VOTE thread open.

Also renamed it to 3.2.0 (even though they technically do not have to follo=
w each other, but probably nice to keep it consistent for users as James su=
ggested.)
[1] http://sourceforge.net/projects/ctakesresources/files/ctakes-resources-=
3.2.0.zip/download

> -----Original Message-----
> From: Masanz, James J. [mailto:Masanz.James@mayo.edu]
> Sent: Thursday, July 10, 2014 5:53 PM
> To: 'dev@ctakes.apache.org'
> Subject: RE: [VOTE] Release Apache cTAKES 3.2.0 (rc2)
>
> Can you also give ctakesresources the number 3.2 or 3.2.0 instead of 3.1.=
3
>
> -----Original Message-----
> From: Chen, Pei [mailto:Pei.Chen@childrens.harvard.edu]
> Sent: Thursday, July 10, 2014 2:12 PM
> To: dev@ctakes.apache.org
> Subject: RE: [VOTE] Release Apache cTAKES 3.2.0 (rc2)
>
> I think this is due to the fact that the default lvg.properties also exit=
s in the
> ctakes-resources project, so if you download and replace, it will overrid=
e the
> ctakes configured one.
> I think it's a bug, but probably always been there...
> I'll fix up ctakes-resources on sourceforge nethertheless but it shouldn'=
t
> require any changes to the release candidates.
>
> > -----Original Message-----
> > From: Masanz, James J. [mailto:Masanz.James@mayo.edu]
> > Sent: Thursday, July 10, 2014 11:59 AM
> > To: 'dev@ctakes.apache.org'
> > Subject: RE: [VOTE] Release Apache cTAKES 3.2.0 (rc2)
> >
> > Hi Tim,
> >
> > When you say that it didn't seem to affect the run, where you
> > comparing output to last release or just checking if data seemed OK at =
a
> glance?
> >
> > -----Original Message-----
> > From: Miller, Timothy [mailto:Timothy.Miller@childrens.harvard.edu]
> > Sent: Thursday, July 10, 2014 7:29 AM
> > To: dev@ctakes.apache.org
> > Subject: RE: [VOTE] Release Apache cTAKES 3.2.0 (rc2)
> >
> > I was able to run the binary without issues this time.
> > I also downloaded the resources from sourceforge and integrated into
> > the bin release and ran with the ctakes dictionary.
> >
> > I did get some weird exceptions thrown that didn't seem to affect the
> > run -- looks like some hardcoded file paths in LVG? (See below)
> >
> > Tim
> >
> >
> > Exception: java.io.FileNotFoundException:
> > /export/home/lu/Development/LVG/lvg2008/data/misc/stopWords.data
> > (No such file or directory)
> > ** Error: problem of opening/reading stop words file:
> > '/export/home/lu/Development/LVG/lvg2008/data/misc/stopWords.data'.
> > Exception: java.io.FileNotFoundException:
> >
> /export/home/lu/Development/LVG/lvg2008/data/misc/nonInfoWords.data
> > (No such file or directory)
> > ** Error: problem of opening/reading non-Info words file:
> >
> '/export/home/lu/Development/LVG/lvg2008/data/misc/nonInfoWords.dat
> > a'.
> > Exception: java.io.FileNotFoundException:
> >
> /export/home/lu/Development/LVG/lvg2008/data/misc/conjunctionWord.d
> > ata (No such file or directory)
> > ** Error: problem of opening/reading conjunction words file:
> >
> '/export/home/lu/Development/LVG/lvg2008/data/misc/conjunctionWord.
> > data'.
> > ** ERR: problem of opening/reading diacritics file:
> >
> '/export/home/lu/Development/LVG/lvg2008/data/Unicode/diacriticMap.da
> > ta'.
> > Exception: java.io.FileNotFoundException:
> >
> /export/home/lu/Development/LVG/lvg2008/data/Unicode/diacriticMap.da
> > ta (No such file or directory)
> > Exception: java.io.FileNotFoundException:
> >
> /export/home/lu/Development/LVG/lvg2008/data/Unicode/ligatureMap.da
> > ta (No such file or directory)
> > ** Error: problem of opening/reading ligature file:
> >
> '/export/home/lu/Development/LVG/lvg2008/data/Unicode/ligatureMap.da
> > ta'.
> > ** Error: problem of opening/reading symbol synonym file:
> >
> '/export/home/lu/Development/LVG/lvg2008/data/Unicode/synonymMap.
> > data'.
> > Exception: java.io.FileNotFoundException:
> >
> /export/home/lu/Development/LVG/lvg2008/data/Unicode/synonymMap.d
> > ata (No such file or directory)
> > **Error: problem of opening/reading file
> > '/export/home/lu/Development/LVG/lvg2008/data/misc/removeS.data'.
> > Exception: java.io.FileNotFoundException:
> > /export/home/lu/Development/LVG/lvg2008/data/misc/removeS.data
> (No
> > such file or directory)
> > ** Error: problem of opening/reading Unicode symbol file:
> >
> '/export/home/lu/Development/LVG/lvg2008/data/Unicode/symbolMap.da
> > ta'.
> > Exception: java.io.FileNotFoundException:
> >
> /export/home/lu/Development/LVG/lvg2008/data/Unicode/symbolMap.dat
> > a (No such file or directory)
> > ** Error: problem of opening/reading Unicode file:
> >
> '/export/home/lu/Development/LVG/lvg2008/data/Unicode/unicodeMap.d
> > ata'.
> > Exception: java.io.FileNotFoundException:
> >
> /export/home/lu/Development/LVG/lvg2008/data/Unicode/unicodeMap.da
> > ta (No such file or directory)
> > ** Error: problem of opening/reading nonStripMap file:
> >
> '/export/home/lu/Development/LVG/lvg2008/data/Unicode/nonStripMap.d
> > ata'.
> > Exception: java.io.FileNotFoundException:
> >
> /export/home/lu/Development/LVG/lvg2008/data/Unicode/nonStripMap.d
> > ata (No such file or directory)
> > java.sql.SQLException: File input/output error
> >
> /export/home/lu/Development/LVG/lvg2008/data/HSqlDb/lvg2008.properti
> > es java.io.FileNotFoundException:
> >
> /export/home/lu/Development/LVG/lvg2008/data/HSqlDb/lvg2008.properti
> > es.new (No such file or directory)
> >
> > ________________________________________
> > From: Masanz, James J. [Masanz.James@mayo.edu]
> > Sent: Wednesday, July 09, 2014 2:26 PM
> > To: 'dev@ctakes.apache.org'
> > Subject: RE: [VOTE] Release Apache cTAKES 3.2.0 (rc2)
> >
> > So far for rc2, I've
> >
> > Verified MD5  and signatures of .zip archives Verified that source at
> > tag matches source in.zip Imported source from archive into eclipse as
> > maven
> > project(s) and compiled without any Errors.
> >
> > --  James
> >
> >
> > -----Original Message-----
> > From: Pei Chen [mailto:chenpei@apache.org]
> > Sent: Tuesday, July 08, 2014 5:11 PM
> > To: dev@ctakes.apache.org
> > Subject: [VOTE] Release Apache cTAKES 3.2.0 (rc2)
> >
> > Hi all,
> >
> > The main difference between rc1 and rc2 is that we removed the lvg-res
> > and assertion-res.jar from the distro.  They still need to be unpacked.
> >
> > This is a call for a vote on releasing the following candidate (rc2)
> > as Apache cTAKES 3.2.0.
> > The major changes include:
> > - New optional YTEX component(s) (Yale Extensions to cTAKES)
> > - New optional improved/faster dictionary lookup
> > (dictionary-lookup-fast)
> > - New optional Temporal component (Time + Event extraction.  Relations
> > will be including in a future release.)
> > - Other bug fixes/enhancements from Jira
> >
> > [TODO: Online documentation still needs to be updated on wiki]
> >
> > For more detailed information on the changes/release notes, please visi=
t:
> > https://issues.apache.org/jira/secure/ReleaseNote.jspa?projectId=3D1231=
3
> > 621
> > &version=3D12324066
> >
> > The release was made using the cTAKES release process documented here:
> > http://ctakes.apache.org/ctakes-release-guide.html
> >
> > The candidate is available at:
> > http://people.apache.org/~chenpei/RCs/ctakes-3.2.0-rc2/apache-ctakes-
> > 3.2.0-src.tar.gz
> > /.zip
> >
> > The tag to be voted on:
> > http://svn.apache.org/repos/asf/ctakes/tags/ctakes-3.2.0-rc2
> >
> > The MD5 checksum of the tarball can be found at:
> > http://people.apache.org/~chenpei/RCs/ctakes-3.2.0-rc2/apache-ctakes-
> > 3.2.0-src.tar.gz.md5
> > /.zip.md5
> >
> > The signature of the tarball can be found at:
> > http://people.apache.org/~chenpei/RCs/ctakes-3.2.0-rc2/apache-ctakes-
> > 3.2.0-src.tar.gz.asc
> > /.zip.asc
> >
> > Apache cTAKES' KEYS file, containing the PGP keys used to sign the rele=
ase:
> > https://dist.apache.org/repos/dist/release/ctakes/KEYS
> >
> > Please vote on releasing these packages as Apache cTAKES 3.2.0. The
> > vote is open for at least the next 72 hours.
> > Only votes from the cTAKES PMC are binding, but folks are welcome to
> > check the release candidate and voice their approval or disapproval.
> > The vote passes if at least three binding +1 votes are cast.
> >
> > [ ] +1 Release the packages as Apache cTAKES 3.2.0 [ ] -1 Do not
> > release the packages because...
> >
> > Also, the convenience binary can be found at:
> > http://people.apache.org/~chenpei/RCs/ctakes-3.2.0-rc2/apache-ctakes-
> > 3.2.0-bin.tar.gz
> > /.zip
> >
> > Note: It's temporarily on people.a.o because the artifacts were too
> > large for https://dist.apache.org/repos/dist/dev/ctakes (Working with
> > infra on increasing the limit).
> >
> >
> > Thanks!