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From Clayton Turner <caturn...@g.cofc.edu>
Subject Re: cTAKES 3.2 Analysis Batch Issue
Date Mon, 07 Jul 2014 15:38:25 GMT
Any update on this issue? I have this problem even if I don't use the ytex
version of the aggregate text processor (UMLS-independent as well).


On Thu, Jul 3, 2014 at 2:33 PM, Clayton Turner <caturner3@g.cofc.edu> wrote:

> Yes, I am running the fracture_demo.xml cpe.
>
> There is no option for the analysis batch (that's the main issue). I also
> get no response in my MySQL database (umls installed - not sure if that can
> be related).
>
> Here's a screenshot of my CPE (using ytex):
> [image: Inline image 1]
>
>
>
>
> On Wed, Jul 2, 2014 at 10:48 PM, vijay garla <vngarla@gmail.com> wrote:
>
>> Hi clayton,
>>
>> I assume you are running the fracture_demo.xml cpe - is that correct?
>>  The CPE GUI should give you the option to set the analysis batch. (see
>> attached screenshot).  That being said, the analysis_batch is not required
>> (it will default to the current date).  Can you attach the log file?
>>
>> -vj
>>
>> [image: Inline image 1]
>>
>>
>> On Wed, Jul 2, 2014 at 12:22 PM, Clayton Turner <caturner3@g.cofc.edu>
>> wrote:
>>
>>> Hi, I'm a relatively new user of cTAKES.
>>>
>>> I recently cloned cTAKES from the repository and I am using UMLS
>>> installed
>>> in my mysql database. I have recently noticed an issue, though. When
>>> conducting the bone fracture demo, In the CPE, I use the
>>> DBCollectionReader
>>> and Analysis Engine from the ctakes-ytex-uima directory within my
>>> CTAKES_HOME.
>>>
>>> I can get this to run successfully, but I am not able to specify an
>>> "analysis batch" in the CPE. Because of this, my ytex database is not
>>> being
>>> updated with results of the CPE run (in the v_document tables). Any ideas
>>> why the analysis batch field is missing?
>>>
>>> Side question: Any update on when cTAKES 3.2 will be officially
>>> released? I
>>> see we're passed the expected release and was curious on how long it will
>>> be until it will officially come out.
>>>
>>> Thanks a lot,
>>> --
>>> Clayton Turner
>>>
>>
>>
>
>
> --
> --
> Clayton Turner
> email: caturner3@g.cofc.edu
> phone: (843)-424-3784
> web: claytonturner.blogspot.com
>
> -------------------------------------------------------------------------------------------------
> “When scientifically investigating the natural world, the only thing worse
> than a blind believer is a seeing denier.”
> - Neil deGrasse Tyson
>



-- 
--
Clayton Turner
email: caturner3@g.cofc.edu
phone: (843)-424-3784
web: claytonturner.blogspot.com
-------------------------------------------------------------------------------------------------
“When scientifically investigating the natural world, the only thing worse
than a blind believer is a seeing denier.”
- Neil deGrasse Tyson

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