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From Clayton Turner <caturn...@g.cofc.edu>
Subject Re: cTAKES 3.2 Analysis Batch Issue
Date Tue, 08 Jul 2014 16:01:12 GMT
I don't see a log file when running the CPE. When running the CVD I have
access to a log file within the gui, but that does not seem to be present
here. Is there a specific place that this log file is saved?


On Tue, Jul 8, 2014 at 3:14 AM, vijay garla <vngarla@gmail.com> wrote:

> Hi Clayton,
>
> The screenshot is not coming through via the newsgroup emails.  can you
> attach the log file?
>
> vj
>
>
> On Mon, Jul 7, 2014 at 5:38 PM, Clayton Turner <caturner3@g.cofc.edu>
> wrote:
>
> > Any update on this issue? I have this problem even if I don't use the
> ytex
> > version of the aggregate text processor (UMLS-independent as well).
> >
> >
> > On Thu, Jul 3, 2014 at 2:33 PM, Clayton Turner <caturner3@g.cofc.edu>
> > wrote:
> >
> >> Yes, I am running the fracture_demo.xml cpe.
> >>
> >> There is no option for the analysis batch (that's the main issue). I
> also
> >> get no response in my MySQL database (umls installed - not sure if that
> can
> >> be related).
> >>
> >> Here's a screenshot of my CPE (using ytex):
> >> [image: Inline image 1]
> >>
> >>
> >>
> >>
> >> On Wed, Jul 2, 2014 at 10:48 PM, vijay garla <vngarla@gmail.com> wrote:
> >>
> >>> Hi clayton,
> >>>
> >>> I assume you are running the fracture_demo.xml cpe - is that correct?
> >>>  The CPE GUI should give you the option to set the analysis batch. (see
> >>> attached screenshot).  That being said, the analysis_batch is not
> required
> >>> (it will default to the current date).  Can you attach the log file?
> >>>
> >>> -vj
> >>>
> >>> [image: Inline image 1]
> >>>
> >>>
> >>> On Wed, Jul 2, 2014 at 12:22 PM, Clayton Turner <caturner3@g.cofc.edu>
> >>> wrote:
> >>>
> >>>> Hi, I'm a relatively new user of cTAKES.
> >>>>
> >>>> I recently cloned cTAKES from the repository and I am using UMLS
> >>>> installed
> >>>> in my mysql database. I have recently noticed an issue, though. When
> >>>> conducting the bone fracture demo, In the CPE, I use the
> >>>> DBCollectionReader
> >>>> and Analysis Engine from the ctakes-ytex-uima directory within my
> >>>> CTAKES_HOME.
> >>>>
> >>>> I can get this to run successfully, but I am not able to specify an
> >>>> "analysis batch" in the CPE. Because of this, my ytex database is not
> >>>> being
> >>>> updated with results of the CPE run (in the v_document tables). Any
> >>>> ideas
> >>>> why the analysis batch field is missing?
> >>>>
> >>>> Side question: Any update on when cTAKES 3.2 will be officially
> >>>> released? I
> >>>> see we're passed the expected release and was curious on how long it
> >>>> will
> >>>> be until it will officially come out.
> >>>>
> >>>> Thanks a lot,
> >>>> --
> >>>> Clayton Turner
> >>>>
> >>>
> >>>
> >>
> >>
> >> --
> >> --
> >> Clayton Turner
> >> email: caturner3@g.cofc.edu
> >> phone: (843)-424-3784
> >> web: claytonturner.blogspot.com
> >>
> >>
> -------------------------------------------------------------------------------------------------
> >> “When scientifically investigating the natural world, the only thing
> >> worse than a blind believer is a seeing denier.”
> >> - Neil deGrasse Tyson
> >>
> >
> >
> >
> > --
> > --
> > Clayton Turner
> > email: caturner3@g.cofc.edu
> > phone: (843)-424-3784
> > web: claytonturner.blogspot.com
> >
> >
> -------------------------------------------------------------------------------------------------
> > “When scientifically investigating the natural world, the only thing
> worse
> > than a blind believer is a seeing denier.”
> > - Neil deGrasse Tyson
> >
>



-- 
--
Clayton Turner
email: caturner3@g.cofc.edu
phone: (843)-424-3784
web: claytonturner.blogspot.com
-------------------------------------------------------------------------------------------------
“When scientifically investigating the natural world, the only thing worse
than a blind believer is a seeing denier.”
- Neil deGrasse Tyson

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