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From vijay garla <vnga...@gmail.com>
Subject Re: cTAKES 3.2 Analysis Batch Issue
Date Tue, 08 Jul 2014 18:55:10 GMT
My bad, the default log4j config just sends everything to the console.  Can
you run the cpe, can you redirect the output to a file like this:
runctakesCPE.bat > cpe.log 2>&1

vj


On Tue, Jul 8, 2014 at 6:01 PM, Clayton Turner <caturner3@g.cofc.edu> wrote:

> I don't see a log file when running the CPE. When running the CVD I have
> access to a log file within the gui, but that does not seem to be present
> here. Is there a specific place that this log file is saved?
>
>
> On Tue, Jul 8, 2014 at 3:14 AM, vijay garla <vngarla@gmail.com> wrote:
>
> > Hi Clayton,
> >
> > The screenshot is not coming through via the newsgroup emails.  can you
> > attach the log file?
> >
> > vj
> >
> >
> > On Mon, Jul 7, 2014 at 5:38 PM, Clayton Turner <caturner3@g.cofc.edu>
> > wrote:
> >
> > > Any update on this issue? I have this problem even if I don't use the
> > ytex
> > > version of the aggregate text processor (UMLS-independent as well).
> > >
> > >
> > > On Thu, Jul 3, 2014 at 2:33 PM, Clayton Turner <caturner3@g.cofc.edu>
> > > wrote:
> > >
> > >> Yes, I am running the fracture_demo.xml cpe.
> > >>
> > >> There is no option for the analysis batch (that's the main issue). I
> > also
> > >> get no response in my MySQL database (umls installed - not sure if
> that
> > can
> > >> be related).
> > >>
> > >> Here's a screenshot of my CPE (using ytex):
> > >> [image: Inline image 1]
> > >>
> > >>
> > >>
> > >>
> > >> On Wed, Jul 2, 2014 at 10:48 PM, vijay garla <vngarla@gmail.com>
> wrote:
> > >>
> > >>> Hi clayton,
> > >>>
> > >>> I assume you are running the fracture_demo.xml cpe - is that correct?
> > >>>  The CPE GUI should give you the option to set the analysis batch.
> (see
> > >>> attached screenshot).  That being said, the analysis_batch is not
> > required
> > >>> (it will default to the current date).  Can you attach the log file?
> > >>>
> > >>> -vj
> > >>>
> > >>> [image: Inline image 1]
> > >>>
> > >>>
> > >>> On Wed, Jul 2, 2014 at 12:22 PM, Clayton Turner <
> caturner3@g.cofc.edu>
> > >>> wrote:
> > >>>
> > >>>> Hi, I'm a relatively new user of cTAKES.
> > >>>>
> > >>>> I recently cloned cTAKES from the repository and I am using UMLS
> > >>>> installed
> > >>>> in my mysql database. I have recently noticed an issue, though.
When
> > >>>> conducting the bone fracture demo, In the CPE, I use the
> > >>>> DBCollectionReader
> > >>>> and Analysis Engine from the ctakes-ytex-uima directory within
my
> > >>>> CTAKES_HOME.
> > >>>>
> > >>>> I can get this to run successfully, but I am not able to specify
an
> > >>>> "analysis batch" in the CPE. Because of this, my ytex database
is
> not
> > >>>> being
> > >>>> updated with results of the CPE run (in the v_document tables).
Any
> > >>>> ideas
> > >>>> why the analysis batch field is missing?
> > >>>>
> > >>>> Side question: Any update on when cTAKES 3.2 will be officially
> > >>>> released? I
> > >>>> see we're passed the expected release and was curious on how long
it
> > >>>> will
> > >>>> be until it will officially come out.
> > >>>>
> > >>>> Thanks a lot,
> > >>>> --
> > >>>> Clayton Turner
> > >>>>
> > >>>
> > >>>
> > >>
> > >>
> > >> --
> > >> --
> > >> Clayton Turner
> > >> email: caturner3@g.cofc.edu
> > >> phone: (843)-424-3784
> > >> web: claytonturner.blogspot.com
> > >>
> > >>
> >
> -------------------------------------------------------------------------------------------------
> > >> “When scientifically investigating the natural world, the only thing
> > >> worse than a blind believer is a seeing denier.”
> > >> - Neil deGrasse Tyson
> > >>
> > >
> > >
> > >
> > > --
> > > --
> > > Clayton Turner
> > > email: caturner3@g.cofc.edu
> > > phone: (843)-424-3784
> > > web: claytonturner.blogspot.com
> > >
> > >
> >
> -------------------------------------------------------------------------------------------------
> > > “When scientifically investigating the natural world, the only thing
> > worse
> > > than a blind believer is a seeing denier.”
> > > - Neil deGrasse Tyson
> > >
> >
>
>
>
> --
> --
> Clayton Turner
> email: caturner3@g.cofc.edu
> phone: (843)-424-3784
> web: claytonturner.blogspot.com
>
> -------------------------------------------------------------------------------------------------
> “When scientifically investigating the natural world, the only thing worse
> than a blind believer is a seeing denier.”
> - Neil deGrasse Tyson
>

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