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From Murali <mmin...@gmail.com>
Subject Re: [VOTE] Release Apache cTAKES 3.2.0 (rc2)
Date Tue, 22 Jul 2014 15:21:59 GMT
+1 on the release.

Sent from my iPhone

> On Jul 22, 2014, at 10:59 AM, "Chen, Pei" <Pei.Chen@childrens.harvard.edu> wrote:
> 
> Thanks James.
> I was planning on closing the vote today.
> In the meantime, does anyone a quick way to clone/rename the wiki documentation for 3.2?
> --Pei
> 
>> -----Original Message-----
>> From: Masanz, James J. [mailto:Masanz.James@mayo.edu]
>> Sent: Monday, July 21, 2014 4:25 PM
>> To: 'dev@ctakes.apache.org'
>> Subject: RE: [VOTE] Release Apache cTAKES 3.2.0 (rc2)
>> 
>> Here's the additional I've done
>> 
>> I ran "mvn test" with 0 Failures and 0 Errors.
>> Ran the AggregateTemplateFiller.xml and received same output (except for
>> internal UIMA identifiers) with rc2 as I did with 3.1.1.
>> 
>> +1 to release
>> 
>> -----Original Message-----
>> From: Masanz, James J.
>> Sent: Wednesday, July 16, 2014 3:59 PM
>> To: 'dev@ctakes.apache.org'
>> Subject: RE: [VOTE] Release Apache cTAKES 3.2.0 (rc2)
>> 
>> FYI, so far I have done the following steps:
>> 
>> downloaded the source archive
>> compiled it using: maven compile
>> downloaded the separately available resources set up classpath to include
>> e.g. jars (from the bin distribution) set ctakes.umlsuser and  ctakes.umlspw
>> env vars run  runctakesCVD.bat loaded
>> AggregatePlaintextUMLSProcessor.xml
>> ran against some simple text.
>> verified did not through an exception.
>> verified some EventMention and EntityMention annotations were produced.
>> 
>> I will do more testing tomorrow. Just giving a status update.
>> 
>> --James
>> 
>> -----Original Message-----
>> From: Miller, Timothy [mailto:Timothy.Miller@childrens.harvard.edu]
>> Sent: Saturday, July 12, 2014 6:24 AM
>> To: dev@ctakes.apache.org
>> Subject: RE: [VOTE] Release Apache cTAKES 3.2.0 (rc2)
>> 
>> Agreed on that.
>> 
>> I downloaded the new resources binary and was able to run my tests on the -
>> bin version of the RC.
>> 
>> +1 for making this the release.
>> 
>> Tim
>> 
>> 
>> ________________________________________
>> From: Masanz, James J. [Masanz.James@mayo.edu]
>> Sent: Friday, July 11, 2014 7:27 PM
>> To: 'dev@ctakes.apache.org'
>> Subject: RE: [VOTE] Release Apache cTAKES 3.2.0 (rc2)
>> 
>> I agree about keeping the thread open.
>> 
>> -- James
>> 
>> -----Original Message-----
>> From: Chen, Pei [mailto:Pei.Chen@childrens.harvard.edu]
>> Sent: Friday, July 11, 2014 4:28 PM
>> To: dev@ctakes.apache.org
>> Subject: RE: [VOTE] Release Apache cTAKES 3.2.0 (rc2)
>> 
>> Updated the lvg.properties file within ctakes-resources on sourceforge [1].
>> Since the Apache cTAKES artifacts didn't change, I would like to keep this
>> VOTE thread open.
>> 
>> Also renamed it to 3.2.0 (even though they technically do not have to follow
>> each other, but probably nice to keep it consistent for users as James
>> suggested.) [1]
>> http://sourceforge.net/projects/ctakesresources/files/ctakes-resources-
>> 3.2.0.zip/download
>> 
>>> -----Original Message-----
>>> From: Masanz, James J. [mailto:Masanz.James@mayo.edu]
>>> Sent: Thursday, July 10, 2014 5:53 PM
>>> To: 'dev@ctakes.apache.org'
>>> Subject: RE: [VOTE] Release Apache cTAKES 3.2.0 (rc2)
>>> 
>>> Can you also give ctakesresources the number 3.2 or 3.2.0 instead of
>>> 3.1.3
>>> 
>>> -----Original Message-----
>>> From: Chen, Pei [mailto:Pei.Chen@childrens.harvard.edu]
>>> Sent: Thursday, July 10, 2014 2:12 PM
>>> To: dev@ctakes.apache.org
>>> Subject: RE: [VOTE] Release Apache cTAKES 3.2.0 (rc2)
>>> 
>>> I think this is due to the fact that the default lvg.properties also
>>> exits in the ctakes-resources project, so if you download and replace,
>>> it will override the ctakes configured one.
>>> I think it's a bug, but probably always been there...
>>> I'll fix up ctakes-resources on sourceforge nethertheless but it
>>> shouldn't require any changes to the release candidates.
>>> 
>>>> -----Original Message-----
>>>> From: Masanz, James J. [mailto:Masanz.James@mayo.edu]
>>>> Sent: Thursday, July 10, 2014 11:59 AM
>>>> To: 'dev@ctakes.apache.org'
>>>> Subject: RE: [VOTE] Release Apache cTAKES 3.2.0 (rc2)
>>>> 
>>>> Hi Tim,
>>>> 
>>>> When you say that it didn't seem to affect the run, where you
>>>> comparing output to last release or just checking if data seemed OK
>>>> at a
>>> glance?
>>>> 
>>>> -----Original Message-----
>>>> From: Miller, Timothy [mailto:Timothy.Miller@childrens.harvard.edu]
>>>> Sent: Thursday, July 10, 2014 7:29 AM
>>>> To: dev@ctakes.apache.org
>>>> Subject: RE: [VOTE] Release Apache cTAKES 3.2.0 (rc2)
>>>> 
>>>> I was able to run the binary without issues this time.
>>>> I also downloaded the resources from sourceforge and integrated into
>>>> the bin release and ran with the ctakes dictionary.
>>>> 
>>>> I did get some weird exceptions thrown that didn't seem to affect
>>>> the run -- looks like some hardcoded file paths in LVG? (See below)
>>>> 
>>>> Tim
>>>> 
>>>> 
>>>> Exception: java.io.FileNotFoundException:
>>>> /export/home/lu/Development/LVG/lvg2008/data/misc/stopWords.data
>>>> (No such file or directory)
>>>> ** Error: problem of opening/reading stop words file:
>>>> 
>> '/export/home/lu/Development/LVG/lvg2008/data/misc/stopWords.data'.
>>>> Exception: java.io.FileNotFoundException:
>>>> 
>>> 
>> /export/home/lu/Development/LVG/lvg2008/data/misc/nonInfoWords.data
>>>> (No such file or directory)
>>>> ** Error: problem of opening/reading non-Info words file:
>>>> 
>>> 
>> '/export/home/lu/Development/LVG/lvg2008/data/misc/nonInfoWords.dat
>>>> a'.
>>>> Exception: java.io.FileNotFoundException:
>>>> 
>>> 
>> /export/home/lu/Development/LVG/lvg2008/data/misc/conjunctionWord.d
>>>> ata (No such file or directory)
>>>> ** Error: problem of opening/reading conjunction words file:
>>>> 
>>> 
>> '/export/home/lu/Development/LVG/lvg2008/data/misc/conjunctionWord.
>>>> data'.
>>>> ** ERR: problem of opening/reading diacritics file:
>>>> 
>>> 
>> '/export/home/lu/Development/LVG/lvg2008/data/Unicode/diacriticMap.da
>>>> ta'.
>>>> Exception: java.io.FileNotFoundException:
>>>> 
>>> 
>> /export/home/lu/Development/LVG/lvg2008/data/Unicode/diacriticMap.da
>>>> ta (No such file or directory)
>>>> Exception: java.io.FileNotFoundException:
>>>> 
>>> 
>> /export/home/lu/Development/LVG/lvg2008/data/Unicode/ligatureMap.da
>>>> ta (No such file or directory)
>>>> ** Error: problem of opening/reading ligature file:
>>>> 
>>> 
>> '/export/home/lu/Development/LVG/lvg2008/data/Unicode/ligatureMap.da
>>>> ta'.
>>>> ** Error: problem of opening/reading symbol synonym file:
>>>> 
>>> 
>> '/export/home/lu/Development/LVG/lvg2008/data/Unicode/synonymMap.
>>>> data'.
>>>> Exception: java.io.FileNotFoundException:
>>>> 
>>> 
>> /export/home/lu/Development/LVG/lvg2008/data/Unicode/synonymMap.d
>>>> ata (No such file or directory)
>>>> **Error: problem of opening/reading file
>>>> '/export/home/lu/Development/LVG/lvg2008/data/misc/removeS.data'.
>>>> Exception: java.io.FileNotFoundException:
>>>> /export/home/lu/Development/LVG/lvg2008/data/misc/removeS.data
>>> (No
>>>> such file or directory)
>>>> ** Error: problem of opening/reading Unicode symbol file:
>>>> 
>>> 
>> '/export/home/lu/Development/LVG/lvg2008/data/Unicode/symbolMap.da
>>>> ta'.
>>>> Exception: java.io.FileNotFoundException:
>>>> 
>>> 
>> /export/home/lu/Development/LVG/lvg2008/data/Unicode/symbolMap.dat
>>>> a (No such file or directory)
>>>> ** Error: problem of opening/reading Unicode file:
>>>> 
>>> 
>> '/export/home/lu/Development/LVG/lvg2008/data/Unicode/unicodeMap.d
>>>> ata'.
>>>> Exception: java.io.FileNotFoundException:
>>>> 
>>> 
>> /export/home/lu/Development/LVG/lvg2008/data/Unicode/unicodeMap.da
>>>> ta (No such file or directory)
>>>> ** Error: problem of opening/reading nonStripMap file:
>>>> 
>>> 
>> '/export/home/lu/Development/LVG/lvg2008/data/Unicode/nonStripMap.d
>>>> ata'.
>>>> Exception: java.io.FileNotFoundException:
>>>> 
>>> 
>> /export/home/lu/Development/LVG/lvg2008/data/Unicode/nonStripMap.d
>>>> ata (No such file or directory)
>>>> java.sql.SQLException: File input/output error
>>>> 
>>> 
>> /export/home/lu/Development/LVG/lvg2008/data/HSqlDb/lvg2008.properti
>>>> es java.io.FileNotFoundException:
>>>> 
>>> 
>> /export/home/lu/Development/LVG/lvg2008/data/HSqlDb/lvg2008.properti
>>>> es.new (No such file or directory)
>>>> 
>>>> ________________________________________
>>>> From: Masanz, James J. [Masanz.James@mayo.edu]
>>>> Sent: Wednesday, July 09, 2014 2:26 PM
>>>> To: 'dev@ctakes.apache.org'
>>>> Subject: RE: [VOTE] Release Apache cTAKES 3.2.0 (rc2)
>>>> 
>>>> So far for rc2, I've
>>>> 
>>>> Verified MD5  and signatures of .zip archives Verified that source
>>>> at tag matches source in.zip Imported source from archive into
>>>> eclipse as maven
>>>> project(s) and compiled without any Errors.
>>>> 
>>>> --  James
>>>> 
>>>> 
>>>> -----Original Message-----
>>>> From: Pei Chen [mailto:chenpei@apache.org]
>>>> Sent: Tuesday, July 08, 2014 5:11 PM
>>>> To: dev@ctakes.apache.org
>>>> Subject: [VOTE] Release Apache cTAKES 3.2.0 (rc2)
>>>> 
>>>> Hi all,
>>>> 
>>>> The main difference between rc1 and rc2 is that we removed the
>>>> lvg-res and assertion-res.jar from the distro.  They still need to be
>> unpacked.
>>>> 
>>>> This is a call for a vote on releasing the following candidate (rc2)
>>>> as Apache cTAKES 3.2.0.
>>>> The major changes include:
>>>> - New optional YTEX component(s) (Yale Extensions to cTAKES)
>>>> - New optional improved/faster dictionary lookup
>>>> (dictionary-lookup-fast)
>>>> - New optional Temporal component (Time + Event extraction.
>>>> Relations will be including in a future release.)
>>>> - Other bug fixes/enhancements from Jira
>>>> 
>>>> [TODO: Online documentation still needs to be updated on wiki]
>>>> 
>>>> For more detailed information on the changes/release notes, please visit:
>>>> https://issues.apache.org/jira/secure/ReleaseNote.jspa?projectId=123
>>>> 13
>>>> 621
>>>> &version=12324066
>>>> 
>>>> The release was made using the cTAKES release process documented
>> here:
>>>> http://ctakes.apache.org/ctakes-release-guide.html
>>>> 
>>>> The candidate is available at:
>>>> http://people.apache.org/~chenpei/RCs/ctakes-3.2.0-rc2/apache-ctakes
>>>> -
>>>> 3.2.0-src.tar.gz
>>>> /.zip
>>>> 
>>>> The tag to be voted on:
>>>> http://svn.apache.org/repos/asf/ctakes/tags/ctakes-3.2.0-rc2
>>>> 
>>>> The MD5 checksum of the tarball can be found at:
>>>> http://people.apache.org/~chenpei/RCs/ctakes-3.2.0-rc2/apache-ctakes
>>>> -
>>>> 3.2.0-src.tar.gz.md5
>>>> /.zip.md5
>>>> 
>>>> The signature of the tarball can be found at:
>>>> http://people.apache.org/~chenpei/RCs/ctakes-3.2.0-rc2/apache-ctakes
>>>> -
>>>> 3.2.0-src.tar.gz.asc
>>>> /.zip.asc
>>>> 
>>>> Apache cTAKES' KEYS file, containing the PGP keys used to sign the
>> release:
>>>> https://dist.apache.org/repos/dist/release/ctakes/KEYS
>>>> 
>>>> Please vote on releasing these packages as Apache cTAKES 3.2.0. The
>>>> vote is open for at least the next 72 hours.
>>>> Only votes from the cTAKES PMC are binding, but folks are welcome to
>>>> check the release candidate and voice their approval or disapproval.
>>>> The vote passes if at least three binding +1 votes are cast.
>>>> 
>>>> [ ] +1 Release the packages as Apache cTAKES 3.2.0 [ ] -1 Do not
>>>> release the packages because...
>>>> 
>>>> Also, the convenience binary can be found at:
>>>> http://people.apache.org/~chenpei/RCs/ctakes-3.2.0-rc2/apache-ctakes
>>>> -
>>>> 3.2.0-bin.tar.gz
>>>> /.zip
>>>> 
>>>> Note: It's temporarily on people.a.o because the artifacts were too
>>>> large for https://dist.apache.org/repos/dist/dev/ctakes (Working
>>>> with infra on increasing the limit).
>>>> 
>>>> 
>>>> Thanks!

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