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From: "Chen, Pei" <Pei.Chen@childrens.harvard.edu>
To: "dev@ctakes.apache.org" <dev@ctakes.apache.org>
Subject: RE: OrangeBookFilterConsumerImpl
Thread-Topic: OrangeBookFilterConsumerImpl
Thread-Index: Ac+Qil3TIjSxE0WBR0WjAZAshn4wlwAAoYpQ
Date: Wed, 25 Jun 2014 15:52:55 +0000
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Nick,
If I'm reading it correctly, that code change essentially tells it to bypas=
s the OrangeBookFilter completely.
If that is the behavior you're looking for (i.e. return all of the drugs by=
passing the OrangeBookFilter, then you can just modify the lookupConsumer c=
lassName in your LookupDesc_Db.xml.  Try something like the NamedEntityLook=
upConsumerImpl.class or similar (i.e. no filters) I don't recall the exact =
name on the top of my head.
--Pei

From: Nick Nikandish [mailto:snikandi@emerginghealthit.com]
Sent: Wednesday, June 25, 2014 11:38 AM
To: dev@ctakes.apache.org
Subject: OrangeBookFilterConsumerImpl

Hi There,

I am using Ctakes and have added my own annotators that utilize CTakes. I n=
eed to use the medication annotator so I can retrieve the medication names.=
 In OrangeBookFilterConsumerImpl class , consumeHits() method has a stateme=
nts:
final boolean isValid =3D isValid( "trade_name", text ) || isValid( "ingred=
ient", text );

It filters out some medication that I actually need. I made this change "bo=
olean isValid=3D ture"  to the code and made it work but I was wondering if=
 there was another way like changing something in the xml files that  have =
the same impact  without changing the code?


Thanks,
Nick Nikandish
Product Development Software Engineer
Clinical Research Informatics

Emerging Health
Montefiore Information Technology
6 Executive Blvd. Suite 290, Yonkers, NY 10701
914-457-6792 Office
snikandi@montefiore.org<mailto:snikandi@montefiore.org>
www.emerginghealthit.com<http://www.emerginghealthit.com/>
www.montefiore.org<http://www.montefiore.org/>

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