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From Harpreet Khanduja <hsk5...@rit.edu>
Subject Re: query
Date Wed, 18 Jun 2014 16:47:13 GMT
Hello Pei,

Thank you so much for helping.


Harpreet


On Wed, Jun 18, 2014 at 11:08 AM, Pei Chen <chenpei@apache.org> wrote:

> Harpreet,
> I just did a fresh checkout of trunk and could recreate the error.  I think
> I see the issue- the orangebook hsqldb resource is empty on maven central.
>  I'm hoping to fix that up today.
>
> --Pei
>
>
> On Tue, Jun 17, 2014 at 6:22 PM, Harpreet Khanduja <hsk5004@rit.edu>
> wrote:
>
> > Hello Pei,
> >
> > I also ran from cmd line same exception
> > and I checked pom.xml file on this location.
> > https://svn.apache.org/repos/asf/ctakes/trunk
> > The version mentioned in the file is 3.1.1.
> > .
> >
> > Could you please tell me about the resources directory problem which I
> > mentioned in the last email?
> >
> > Thank you so much for your time.
> >
> > Harpreet
> >
> >
> >
> >
> > On Tue, Jun 17, 2014 at 5:45 PM, Chen, Pei <
> Pei.Chen@childrens.harvard.edu
> > >
> > wrote:
> >
> > > If this is trunk, Can you do an 'svn update' to ensure you have the
> > latest?
> > > If this is trunk you won't need to do a separate download- maven should
> > > download and unpack it automatically for you.
> > > Also try the command line alternative:
> > > 'mvn -PrunCVD compile' from the root dir. Let me know.
> > >
> > >
> > > Sent from my iPhone
> > >
> > > > On Jun 17, 2014, at 5:37 PM, "Harpreet Khanduja" <hsk5004@rit.edu>
> > > wrote:
> > > >
> > > > Pei,
> > > >
> > > >  Thank you for the quick reply.
> > > >  I am using CVD GUI within eclipse which is under
> > > >> ctakes-clinical-pipeline project..
> > > >> resources
> > > >> launch
> > > > UIMA_CVD---clinical_documents_pipeline.launch.
> > > >
> > > >  I am using ctakes 3.1.1 and resouces also 3.1
> > > >
> > > > I used this link for svn :
> > https://svn.apache.org/repos/asf/ctakes/trunk
> > > > when I downloaded ctakes using Eclipse.
> > > >
> > > > isn't this svn for ctakes 3.1.1?
> > > >
> > > > Thank you,
> > > >
> > > > Harpreet
> > > >
> > > >
> > > >> On Tue, Jun 17, 2014 at 5:29 PM, Pei Chen <chenpei@apache.org>
> wrote:
> > > >>
> > > >> Harpreet,
> > > >> Are you using the CVD GUI? or within Eclipse IDE?
> > > >> Also which version cTAKES are you using? trunk?
> > > >> --Pei
> > > >>
> > > >>
> > > >> On Tue, Jun 17, 2014 at 5:13 PM, Harpreet Khanduja <hsk5004@rit.edu
> >
> > > >> wrote:
> > > >>
> > > >>> Hello Pei,
> > > >>>  I would really appreciate if you could help me again.
> > > >>>  After talking to you and reading other email archives. I have
done
> > > >> almost
> > > >>> everything I could, but I am not able to use
> > > >>> AggregatePlainTextUMLSProcessor.xml using
> > > >>> UIMA_CVD----clinical-pipeline.launch.
> > > >>>
> > > >>>  Just to be sure.
> > > >>>  The resources folder that from <
> > > >>
> > >
> >
> http://sourceforge.net/projects/ctakesresources/files/ctakes-resources-3.1.0.zip/download
> > > >>> url
> > > >>>  is used to replace the resources folder which is already inside
> > > >>> ctakes/ctakes-dictionary-lookup/ -- directory            or
> > > >>>         ctakes/ctakes-dictionary-lookup-res/source/main/ --
> > directory.
> > > >>>
> > > >>> And then which directory is used as a classpath to
> > > >>> ctakes-clinical-pipeline project.
> > > >>>
> > > >>> I still get the same exception that I was getting earlier. I looked
> > > into
> > > >>> the exception deeply and I found that the exception is thrown
> > > >>> while creating a connection object ( iv_conn ) in
> > > >>> JdbcConnectionResourceImpl.java (   line 109 or 110 ) which is
> inside
> > > >>>                      ctakes- core/
> > > >>>> src/main/java
> > > >>>> org.apache.ctakes.core.resource
> > > >>>                                                    package.
> > > >>>
> > > >>> Thank you very much.
> > > >>> Harpreet
> > > >>>
> > > >>>
> > > >>> On Wed, Jun 11, 2014 at 4:33 PM, Chen, Pei <
> > > >> Pei.Chen@childrens.harvard.edu
> > > >>> wrote:
> > > >>>
> > > >>>> Harpreet,
> > > >>>> Just curious- is maven able to connect to the internet (maven
> > central
> > > >>>> repositories)? i.e. did you have to set your ~/.m2/settings.xml
> with
> > > >>> proxy
> > > >>>> info if behind a firewall?
> > > >>>> If it was an intermittent issue, you can try clearing out
the
> local
> > > >>>> ~/.m2/repository?
> > > >>>> --Pei
> > > >>>>
> > > >>>>> -----Original Message-----
> > > >>>>> From: Harpreet Khanduja [mailto:hsk5004@rit.edu]
> > > >>>>> Sent: Wednesday, June 11, 2014 3:54 PM
> > > >>>>> To: dev@ctakes.apache.org
> > > >>>>> Subject: Re: query
> > > >>>>>
> > > >>>>> Pei,
> > > >>>>>   I had provided the classpath =
> ctakes-dictionay-look-up/resources
> > > >> to
> > > >>>> all the
> > > >>>>> projects in ctakes.
> > > >>>>>   as it says in the documentation but there was nothing
inside my
> > > >>> target
> > > >>>>> folder in ctakes-clinical-pipeline directory.
> > > >>>>>   So, then I ran maven compile and I got following error.
> > > >>>>>
> > > >>>>>
> > > >>>>> [ERROR] Failed to execute goal on project
> ctakes-clinical-pipeline:
> > > >>>> Could not
> > > >>>>> resolve dependencies for project
> > > >>>>> org.apache.ctakes:ctakes-clinical-pipeline:jar:3.1.2-SNAPSHOT:
> > Failed
> > > >>> to
> > > >>>>> collect dependencies for
> > > >>> [org.apache.ctakes:ctakes-type-system:jar:3.1.2-
> > > >>>>> SNAPSHOT (compile),
> > org.apache.ctakes:ctakes-core:jar:3.1.2-SNAPSHOT
> > > >>>>> (compile), org.apache.ctakes:ctakes-utils:jar:3.1.2-SNAPSHOT
> > > >> (compile),
> > > >>>>> jdom:jdom:jar:1.0 (compile), junit:junit:jar:4.10 (test),
> > > >>>>> org.apache.ctakes:ctakes-context-tokenizer:jar:3.1.2-SNAPSHOT
> > > >>> (compile),
> > > >>>>> org.apache.ctakes:ctakes-dictionary-lookup:jar:3.1.2-SNAPSHOT
> > > >>> (compile),
> > > >>>>> org.apache.ctakes:ctakes-preprocessor:jar:3.1.2-SNAPSHOT
> (compile),
> > > >>>>> org.apache.ctakes:ctakes-lvg:jar:3.1.2-SNAPSHOT (compile),
> > > >>>>> org.apache.ctakes:ctakes-chunker:jar:3.1.2-SNAPSHOT (compile),
> > > >>>>> org.apache.ctakes:ctakes-ne-contexts:jar:3.1.2-SNAPSHOT
> (compile),
> > > >>>>> org.apache.ctakes:ctakes-pos-tagger:jar:3.1.2-SNAPSHOT
(compile),
> > > >>>>> org.apache.ctakes:ctakes-assertion:jar:3.1.2-SNAPSHOT
(compile),
> > > >>>>> org.apache.ctakes:ctakes-dependency-parser:jar:3.1.2-SNAPSHOT
> > > >>> (compile),
> > > >>>>> org.apache.ctakes:ctakes-dependency-parser-res:jar:3.1.2-SNAPSHOT
> > > >>>>> (compile), org.apache.ctakes:ctakes-ytex:jar:3.1.2-SNAPSHOT
> > > >> (compile),
> > > >>>>> org.apache.ctakes:ctakes-ytex-res:jar:3.1.2-SNAPSHOT (compile),
> > > >>>>> org.apache.ctakes:ctakes-ytex-uima:jar:3.1.2-SNAPSHOT
(compile)]:
> > > >>> Failed
> > > >>>>> to read artifact descriptor for
> > > >>>>> org.apache.ctakes:ctakes-type-system:jar:3.1.2-SNAPSHOT:
Failure
> to
> > > >>> find
> > > >>>>> org.apache.ctakes:ctakes:pom:3.1.2-SNAPSHOT in
> > > >>>>> http://repository.apache.org/snapshots was cached in the
local
> > > >>>> repository,
> > > >>>>> resolution will not be reattempted until the update interval
of
> > > >>>>> apache.snapshots has elapsed or updates are forced ->
[Help 1]
> > > >> [ERROR]
> > > >>>>>
> > > >>>>>
> > > >>>>>
> > > >>>>> On Wed, Jun 11, 2014 at 2:17 PM, Chen, Pei
> > > >>>>> <Pei.Chen@childrens.harvard.edu>
> > > >>>>> wrote:
> > > >>>>>
> > > >>>>>> Harpreet,
> > > >>>>>> I had a closer look at your log file and it looks
like you were
> > > >>>>>> actually trying to run it from Eclipse IDE?
> > > >>>>>> If so, just ensure that the resources do exist in
the classpath.
> > > >>>>>> If it's within eclipse ide, the plugin should download
and
> unpack
> > > >> the
> > > >>>>>> umls dictionaries automatically actually. (you can
check the
> below
> > > >> to
> > > >>>>>> ensure it exists
> > > >>>>>> target/classes/org/apache/ctakes/dictionary/lookup/umls2011ab/)
> > > >>>>>> You can also try running 'mvn clean compile' from
the command
> line
> > > >> as
> > > >>>>> well.
> > > >>>>>>
> > > >>>>>>
> > > >>>>>>
> > > >>>>>>> -----Original Message-----
> > > >>>>>>> From: Harpreet Khanduja [mailto:hsk5004@rit.edu]
> > > >>>>>>> Sent: Wednesday, June 11, 2014 2:09 PM
> > > >>>>>>> To: dev@ctakes.apache.org
> > > >>>>>>> Subject: Re: query
> > > >>>>>>>
> > > >>>>>>> Hello,
> > > >>>>>>>   Thanks for the reply, but I have already done
that and I made
> > > >>>>>>> sure
> > > >>>>>> that
> > > >>>>>>>   these resources are there all over again.
> > > >>>>>>>
> > > >>>>>>> Harpreet
> > > >>>>>>>
> > > >>>>>>>
> > > >>>>>>>
> > > >>>>>>> On Wed, Jun 11, 2014 at 1:49 PM, Pei Chen <chenpei@apache.org>
> > > >>>>> wrote:
> > > >>>>>>>
> > > >>>>>>>> Harpreet,
> > > >>>>>>>> Ensure that you have downloaded the dictionaries
(umls) per
> > > >>>>>>>> download
> > > >>>>>>> page:
> > > >>>>>>>> http://ctakes.apache.org/downloads.cgi
> > > >>>>>>>> Resources
> > > >>>>>>>>
> > > >>>>>>>> Resources are required to run most of cTAKES.
They are
> > > >> available
> > > >>>>>>>> for download from SourceForge: ctakes-resources-3.1.0.zip
<
> > > >>> http://sourceforge.net/projects/ctakesresources/files/ctakes-resou
> > > >>>>>>>> rces
> > > >>>>>>>> -3.1.0.zip/download
> > > >>>>>>>> .
> > > >>>>>>>>
> > > >>>>>>>> Please download, unzip and add/merge the contents
to the
> > > >> existing
> > > >>>>>>>> resources directory. Follow the User
> > > >>>>>>>> <https://cwiki.apache.org/confluence/x/oxAHAg>
> > > >>>>>>>> or Developer <https://cwiki.apache.org/confluence/x/nxAHAg>
> > > >>>>>>>> Install Guide to direct you through the installation
process.
> > > >>>>>>>>
> > > >>>>>>>>
> > > >>>>>>>> On Wed, Jun 11, 2014 at 1:45 PM, Harpreet
Khanduja
> > > >>>>>>>> <hsk5004@rit.edu>
> > > >>>>>>>> wrote:
> > > >>>>>>>>
> > > >>>>>>>>> Hello,
> > > >>>>>>>>>  I am trying to use ctakes as a developer.
I am not able to
> > > >>> use
> > > >>>>>>>>> UMLS resources when I run
> > > >>>>>>>>>  the AEs which use UMLS Dictionary.
> > > >>>>>>>>>  I have signed up on the UMLS website
and I am using the
> > > >>>>>>>>> correct email
> > > >>>>>>>> and
> > > >>>>>>>>> password.
> > > >>>>>>>>>  I have specified username and password
in
> > > >>>>>>>>>
> > > >>>>>>>>>   Dictionary Lookup: <cTAKES_HOME>/desc/ctakes-dictionary-
> > > >>>>> lookup/desc/analysis_engine/DictionaryLookupAnnotatorUMLS.xml*
> > > >>>>>>>>>
> > > >>>>>>>>>
> > > >>>>>>>>>  But I keep getting the exception. I would
really appreciate
> > > >>>>>>>>> any help on this.
> > > >>>>>>>>>
> > > >>>>>>>>> OUTPUT THAT I GET  on running
> > > >>>>> AggregatePlaintextUMLSProcessor.xml :
> > > >>>>>>>>>
> > > >>>>>>>>>
> > > >>>>>>>>>  log4j: reset attribute= "false".
> > > >>>>>>>>> log4j: Threshold ="null".
> > > >>>>>>>>> log4j: Level value for root is  [INFO].
> > > >>>>>>>>> log4j: root level set to INFO
> > > >>>>>>>>> log4j: Class name: [org.apache.log4j.ConsoleAppender]
> > > >>>>>>>>> log4j: Parsing layout of class:
> > > >>> "org.apache.log4j.PatternLayout"
> > > >>>>>>>>> log4j: Setting property [conversionPattern]
to [%d{dd MMM
> > > >> yyyy
> > > >>>>>>>>> HH:mm:ss} %5p %c{1} - %m%n].
> > > >>>>>>>>> log4j: Adding appender named [consoleAppender]
to category
> > > >>>> [root].
> > > >>>>>>>>> 11 Jun 2014 13:07:01  INFO TokenizerAnnotatorPTB
-
> > > >> Initializing
> > > >>>>>>>>> org.apache.ctakes.core.ae.TokenizerAnnotatorPTB
> > > >>>>>>>>> 11 Jun 2014 13:07:01  INFO POSTagger -
POS tagger model file:
> > > >>>>>>>>> org/apache/ctakes/postagger/models/mayo-pos.zip
> > > >>>>>>>>> 11 Jun 2014 13:07:01  INFO
> > > >> ContextDependentTokenizerAnnotator -
> > > >>>>>>>>> Finite state machines loaded.
> > > >>>>>>>>> 11 Jun 2014 13:07:01  INFO Chunker - Chunker
model file:
> > > >>>>>>>>> org/apache/ctakes/chunker/models/chunker-model.zip
> > > >>>>>>>>> 11 Jun 2014 13:07:03  INFO SentenceDetector
- Sentence
> > > >> detector
> > > >>>>>>>>> model
> > > >>>>>>>> file:
> > > >>>>>>>>> org/apache/ctakes/core/sentdetect/sd-med-model.zip
> > > >>>>>>>>> 11 Jun 2014 13:07:03  INFO LvgCmdApiResourceImpl
- Loading
> > > >> NLM
> > > >>>>>>>>> Norm and
> > > >>>>>>>> Lvg
> > > >>>>>>>>> with config file =
> > > >>>>>>>> D:\workspaces\workspace_cTakes\ctakes\ctakes-dictionary-
> > > >>>>>>> lookup\resourc
> > > >>>>>>>> es\org\apache\ctakes\lvg\data\config\lvg.properties
> > > >>>>>>>>> 11 Jun 2014 13:07:03  INFO LvgCmdApiResourceImpl
-   config
> > > >>> file
> > > >>>>>> absolute
> > > >>>>>>>>> path =
> > > >>>>>>>> D:\workspaces\workspace_cTakes\ctakes\ctakes-dictionary-
> > > >>>>>>> lookup\resourc
> > > >>>>>>>> es\org\apache\ctakes\lvg\data\config\lvg.properties
> > > >>>>>>>>> 11 Jun 2014 13:07:03  INFO LvgCmdApiResourceImpl
- cwd =
> > > >> D:\workspaces\workspace_cTakes\ctakes\ctakes-clinical-pipeline
> > > >>>>>>>>> 11 Jun 2014 13:07:03  INFO LvgCmdApiResourceImpl
- cd
> > > >>>>>>>> D:\workspaces\workspace_cTakes\ctakes\ctakes-dictionary-
> > > >>>>>>> lookup\resourc
> > > >>>>>>>> es\org\apache\ctakes\lvg\
> > > >>>>>>>>> 11 Jun 2014 13:07:03  INFO LvgCmdApiResourceImpl
- cd
> > > >> D:\workspaces\workspace_cTakes\ctakes\ctakes-clinical-pipeline
> > > >>>>>>>>> 11 Jun 2014 13:07:04  INFO JdbcConnectionResourceImpl
-
> > > >>>>>>>>> Connection established to:
> > > >>> jdbc:hsqldb:res:/org/apache/ctakes/dictionary/lookup/umls2011ab/
> > > >>>>>>>>> umls
> > > >>>>>>>>> Exception in thread "main"
> > > >>>>>>>>> org.apache.uima.resource.ResourceInitializationException
> > > >>>>>>>>> at
> > > >>>
> org.apache.ctakes.core.resource.JdbcConnectionResourceImpl.load(Jdbc
> > > >>>>>>> Co
> > > >>>>>>>> nnectionResourceImpl.java:130)
> > > >>>>>>>>> at
> > > >>>>>
> > org.apache.uima.resource.impl.ResourceManager_impl.registerResource(
> > > >>>>>>> Re
> > > >>>>>>>> sourceManager_impl.java:603)
> > > >>>>>>>>> at
> > > >>> org.apache.uima.resource.impl.ResourceManager_impl.initializeExter
> > > >>>>>>>> nalR
> > > >>>>>>>> esources(ResourceManager_impl.java:442)
> > > >>>>>>>>> at
> > > >>> org.apache.uima.resource.Resource_ImplBase.initialize(Resource_Imp
> > > >>>>>>>> lBas
> > > >>>>>>>> e.java:153)
> > > >>>>>>>>> at
> > > >>> org.apache.uima.analysis_engine.impl.AnalysisEngineImplBase.initia
> > > >>>>>>>> lize
> > > >>>>>>>> (AnalysisEngineImplBase.java:157)
> > > >>>>>>>>> at
> > > >>> org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.
> > > >>>>>>>> init
> > > >>>>>>>> ialize(PrimitiveAnalysisEngine_impl.java:123)
> > > >>>>>>>>> at
> > > >>>>>
> > org.apache.uima.impl.AnalysisEngineFactory_impl.produceResource(Anal
> > > >>>>>>> ys
> > > >>>>>>>> isEngineFactory_impl.java:94)
> > > >>>>>>>>> at
> > > >>>>>
> > org.apache.uima.impl.CompositeResourceFactory_impl.produceResource(C
> > > >>>>>>> om
> > > >>>>>>>> positeResourceFactory_impl.java:62)
> > > >>>>>>>>> at
> > > >>>>> org.apache.uima.UIMAFramework.produceResource(UIMAFramework.java:
> > > >>>>>>> 269
> > > >>>>>>>>> )
> > > >>>>>>>>> at
> > > >>>>> org.apache.uima.UIMAFramework.produceAnalysisEngine(UIMAFramework
> > > >>>>>>> .java
> > > >>>>>>>> :387)
> > > >>>>>>>>> at
> > > >>
> org.apache.uima.analysis_engine.asb.impl.ASB_impl.setup(ASB_impl.java:
> > > >>>>>>>> 254)
> > > >>>>>>>>> at
> > > >>> org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.
> > > >>>>>>>> init
> > > >>>>>>>> ASB(AggregateAnalysisEngine_impl.java:431)
> > > >>>>>>>>> at
> > > >>> org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.
> > > >>>>>>>> init
> > > >>> ializeAggregateAnalysisEngine(AggregateAnalysisEngine_impl.java:37
> > > >>>>>>>> 5)
> > > >>>>>>>>> at
> > > >>> org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.
> > > >>>>>>>> init
> > > >>>>>>>> ialize(AggregateAnalysisEngine_impl.java:185)
> > > >>>>>>>>> at
> > > >>>>>
> > org.apache.uima.impl.AnalysisEngineFactory_impl.produceResource(Anal
> > > >>>>>>> ys
> > > >>>>>>>> isEngineFactory_impl.java:94)
> > > >>>>>>>>> at
> > > >>>>>
> > org.apache.uima.impl.CompositeResourceFactory_impl.produceResource(C
> > > >>>>>>> om
> > > >>>>>>>> positeResourceFactory_impl.java:62)
> > > >>>>>>>>> at
> > > >>>>> org.apache.uima.UIMAFramework.produceResource(UIMAFramework.java:
> > > >>>>>>> 269
> > > >>>>>>>>> )
> > > >>>>>>>>> at
> > > >>>>> org.apache.uima.UIMAFramework.produceAnalysisEngine(UIMAFramework
> > > >>>>>>> .java
> > > >>>>>>>> :387)
> > > >>>>>>>>> at
> > > >>
> org.apache.uima.analysis_engine.asb.impl.ASB_impl.setup(ASB_impl.java:
> > > >>>>>>>> 254)
> > > >>>>>>>>> at
> > > >>> org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.
> > > >>>>>>>> init
> > > >>>>>>>> ASB(AggregateAnalysisEngine_impl.java:431)
> > > >>>>>>>>> at
> > > >>> org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.
> > > >>>>>>>> init
> > > >>> ializeAggregateAnalysisEngine(AggregateAnalysisEngine_impl.java:37
> > > >>>>>>>> 5)
> > > >>>>>>>>> at
> > > >>> org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.
> > > >>>>>>>> init
> > > >>>>>>>> ialize(AggregateAnalysisEngine_impl.java:185)
> > > >>>>>>>>> at
> > > >>>>>
> > org.apache.uima.impl.AnalysisEngineFactory_impl.produceResource(Anal
> > > >>>>>>> ys
> > > >>>>>>>> isEngineFactory_impl.java:94)
> > > >>>>>>>>> at
> > > >>>>>
> > org.apache.uima.impl.CompositeResourceFactory_impl.produceResource(C
> > > >>>>>>> om
> > > >>>>>>>> positeResourceFactory_impl.java:62)
> > > >>>>>>>>> at
> > > >>>>> org.apache.uima.UIMAFramework.produceResource(UIMAFramework.java:
> > > >>>>>>> 269
> > > >>>>>>>>> ) at
> > > >>>>> org.apache.uima.UIMAFramework.produceResource(UIMAFramework.java:
> > > >>>>>>> 314
> > > >>>>>>>>> )
> > > >>>>>>>>> at
> > > >>>>> org.apache.uima.UIMAFramework.produceAnalysisEngine(UIMAFramework
> > > >>>>>>> .java
> > > >>>>>>>> :425)
> > > >>>>>>>>> at
> > > >>> org.uimafit.factory.AnalysisEngineFactory.createAggregate(Analysis
> > > >>>>>>>> Engi
> > > >>>>>>>> neFactory.java:424)
> > > >>>>>>>>> at
> > > >>> org.uimafit.pipeline.SimplePipeline.runPipeline(SimplePipeline.jav
> > > >>>>>>>> a:16
> > > >>>>>>>> 5)
> > > >>>>>>>>> at
> > > >>> org.uimafit.pipeline.SimplePipeline.runPipeline(SimplePipeline.jav
> > > >>>>>>>> a:19
> > > >>>>>>>> 0)
> > > >>>>>>>>> at
> > > >>> org.apache.ctakes.clinicalpipeline.ClinicalPipelineFactory.main(Cl
> > > >>>>>>>> inic
> > > >>>>>>>> alPipelineFactory.java:116)
> > > >>>>>>>>> Caused by: java.sql.SQLException: File
input/output error:
> > > >>>>>>>>> java.io.IOException: Stream closed at
> > > >>>>>>>>> org.hsqldb.jdbc.Util.sqlException(Unknown
Source) at
> > > >>>>>>>>> org.hsqldb.jdbc.jdbcConnection.<init>(Unknown
Source) at
> > > >>>>>>>>> org.hsqldb.jdbcDriver.getConnection(Unknown
Source) at
> > > >>>>>>>>> org.hsqldb.jdbcDriver.connect(Unknown
Source) at
> > > >>>>>>>>> java.sql.DriverManager.getConnection(Unknown
Source) at
> > > >>>>>>>>> java.sql.DriverManager.getConnection(Unknown
Source) at
> > > >>>
> org.apache.ctakes.core.resource.JdbcConnectionResourceImpl.load(Jdbc
> > > >>>>>>> Co
> > > >>>>>>>> nnectionResourceImpl.java:109)
> > > >>>>>>>>> ... 30 more
> > > >>
> > >
> >
>

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