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From: "John David Osborne (Campus)" <ozborn@uab.edu>
To: "dev@ctakes.apache.org" <dev@ctakes.apache.org>
Subject: YTEX Integration Results/ LVG
Thread-Topic: YTEX Integration Results/ LVG
Thread-Index: AQHPJp1epdOgQCvmi0+q6ZwGEXidSw==
Date: Mon, 10 Feb 2014 20:19:14 +0000
Message-ID: <CF1E60F6.2EC49%ozborn@uab.edu>
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Hello!

This is my first post to the list, I'm a graduate student at UAB in the COR=
AL lab (with Steven Bethard) and I also work at UAB as a research associate=
.

I have been working on testing the integration of YTEX that Vijay has done.=
 I followed the directions Vijay wrote and got the YTEX branch of CTAKES ru=
nning (YTEXPipeline.xml). The only couple of problems I ran into were:

1) A typo in ctakes-ytex-uima/desc/analysis_engine/YTEXPipeline.xml around =
line 81. I ended up just removing the configuration parameter, deleting row=
s 78-83.
2) Problems with LVG. During setup I got the warning from SetupAuiFirstWord=
 that\ "lvgdesc/analysis_engine/LvgAnnotator.xml" is not available and that=
 it couldn't initialize LVG. I wasn't too surprised since the instructions =
didn't mention installation of LVG (it doesn't appear to be part of the oth=
er downloads) but it is unclear to me whether ytex in cTAKES is still using=
 LVG =96 I assume it is?

Vijay, would it be okay to install the 2014 edition of LVG? I'm guessing it=
 has only been tested with the 2008 version?

Also, the path looks wrong, there is no "lvgdesc" directory  - the descript=
or file is in desc/ctakes-lvg/desc/analysis_engine/LvgAnnotator.xml.

--
John David Osborne
Research Associate
University of Alabama at Birmingham
Biomedical Informatics
Center for Clinical and Translational Science
1720 7th Avenue South
Sparks Building, Suite 175
Birmingham, AL, 35294


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